Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0727300 |
| Transcript ID | LotjaGi1g1v0727300.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Nodulin-like / Major Facilitator Superfamily protein; TAIR: AT2G39210.1 Major facilitator superfamily protein; Swiss-Prot: sp|F4I9E1|NFD4_ARATH Protein NUCLEAR FUSION DEFECTIVE 4; TrEMBL-Plants: tr|G7I7D1|G7I7D1_MEDTR MFS transporter; Found in the gene: LotjaGi1g1v0727300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:129863449..129865763) extracted from Lotus japonicus Gifu genome v1.2.
CATATATCATGTTTATCACTTATTTTTCATCTCTTAATATTTTTCTCTAGTGATCTACACTCAAAATATGTATACACAAA ACATTATTGTTTATTGCTCATTTGGACAGGGGAGAAATTTTGTCAATATTCTTAATATGTCTGCTCTTGTAAATATCAAT ATTATTTCTTTTCTTTTTTAAGTTTCTTGTAAATATCATTGATTGTAGTTGGAAATTAGAACTTCACACTCTTGTGTATA TATTCTAATCACTATTATCCAAAATTAAACCATCTCTATTCTTCTTTGATAGTATATCAGTTCATGAACAACTTGGTGCT AGCCTGCTAGCTAGCTTTCTGCTGAAAAATAGGAGTGAGAAAAATGGTATTTTCCACAAATCATGGTGGAAGTGTTTGGC AAAACAGCAAAGGCTTCACCCTCCAAGTCCTCACAGGAAGATGGTTCATGGTGTTTTCCTCATTCATGATCATGTCAGTA TCAGGAGCAAGCTACATGTTTGGCCTCTACTCCAGAGAAATCAAGTCAGTTTTGGGCTATGACCAATCCACCCTCACTCT TCTAAGCTTCTTCAAAGACTTAGGTGCCAACTTTGGCATTCTCTCAGGCCTAGTCAATGAAATCACACCCCCTTGGGTTG TCCTAACAGTTGGTGGTGTTCTCAATTTCTTTGGCTACTTCATGATCTGGCTTGCTGTGACAAAAAAAATCACCAAACCT CAAGTGTGGAACATGTGCTTGTACATCTTCATTGGAGCCAATTCTCACTGCTCAACCAACACTGGAGCTTTAGTCACTAG TGTGAAGAATTTCCCTGGAAGCAGAGGAATTGTCTTAGGCCTTTTGAGTGGTTATCTGGGTCTAAGTGCAGCAATCATCA CTCAACTTTACTATGCCTTCTATGGAAATGACTCAAAATCTTTGATTTTGCTCATGGCTTGGCTTCCAACTGCAACAACC TTTGTATTTTTGCCAGTTATCAAGCACCACAAGGGAGTTCAAAAGGCAAATGATTCAAAAACTTTCTATAATTTCCTCTA CTTGACTCTAGTCCTTGCAGGGTTCCTCTTGGTAATGATCATAGTGCAAAAAGCTTTCAACTTTACAAAAAATGGATACT ATGTCACTTCCACTGTGATGCTTCTCTTGCTAATCCTGCCACTTGTTGTTGTTATCATTGAAGAACAAAAGATTTGGAAC GTGAAGCAAGAAAGCATCTATAGTGAAAATCCTCCTAAGCCTCTGAATATAACTTCAGAGATGCCAGATCTTCAGAAGCC AAATGCTTCCCAAGAAGGAGAAACTACCCAAAACCAAAAGCAAGTTTCATGTTGGAGAGACATGCTGAATCCCCCAAGAA GAGGTGAAGATCACACAATTCTTCAAGCCCTTTTCAGCCCTGACATGGTGATTCTTTTCTTTGCCACAATTTGTGGACTT GGTGGGAGCCTCACTGTGGTAAACAACTTGAGCCAAATTGGGTTATCTTTAGGGTACCCTGCACATAGCATAACCACATT TGTGTCCCTCTTGGCAATTTGGATCTACATGGGTAAAATTGTGCAAGGTGTTGTCTCAGAGTACATCATAGCCAAGTATA AAGTCCCTAGGCCTATCATACTCACATTAATTCTTGTGTTATCTTGTTTTGGTCATCTTCTAATTGCTTTTAATGTCCCC AATGGTCTCTATGCAGCCTCAATTATTATTGGGTTCTGCTTTGGGGCAAATTGGCCATTGCTGTTTTCCATCATATCTGA ACTTTTTGGGCTTAAATATTACTCAACTTTGTACAATGTTGGGTCAGTTGCAAGCCCAATTGGGTCATATTTGTTCAGTT TGAGGGTTGCAGGGTATTTGTATGACAAGGAAGGTAGAAGGCAAATGGAAGCATTGGGGTTGAAGAGGAAGCCAGGGGAA GAGTTGAATTGTAATGGGAGTGACTGTTACAGAAAGGCTTTCATTATAATCACTGCAGTGACCTTGCTTGGGGCACTTGT GTCTCTCATTTTGGTGCACAGGACTAGAGAGTTTTATAAAAGTGACATATACAAAAAGTTCAGAGAAGAAGCTAAAAGTG TTGAAACTGAAATGAATGTGACTCAGAACAAGGTTGATCCTGCTGCAAATGAAGGATAGAGATATCTTTGGTCAGGAATT GGTAATGATTTGATGTAGTTAGGAAAAAGATAGTACTTGAGCAGCAGCTAGAACAACTGCAATAAATACCTTATAGTTGG TAATTTATAATAGAATTTCTTGCAATGTTCTTTTTATTATCATTATCTATATATATATATGAAAATAAGGTTTTC
CDS sequence (LotjaGi1g1v0727300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTATTTTCCACAAATCATGGTGGAAGTGTTTGGCAAAACAGCAAAGGCTTCACCCTCCAAGTCCTCACAGGAAGATG GTTCATGGTGTTTTCCTCATTCATGATCATGTCAGTATCAGGAGCAAGCTACATGTTTGGCCTCTACTCCAGAGAAATCA AGTCAGTTTTGGGCTATGACCAATCCACCCTCACTCTTCTAAGCTTCTTCAAAGACTTAGGTGCCAACTTTGGCATTCTC TCAGGCCTAGTCAATGAAATCACACCCCCTTGGGTTGTCCTAACAGTTGGTGGTGTTCTCAATTTCTTTGGCTACTTCAT GATCTGGCTTGCTGTGACAAAAAAAATCACCAAACCTCAAGTGTGGAACATGTGCTTGTACATCTTCATTGGAGCCAATT CTCACTGCTCAACCAACACTGGAGCTTTAGTCACTAGTGTGAAGAATTTCCCTGGAAGCAGAGGAATTGTCTTAGGCCTT TTGAGTGGTTATCTGGGTCTAAGTGCAGCAATCATCACTCAACTTTACTATGCCTTCTATGGAAATGACTCAAAATCTTT GATTTTGCTCATGGCTTGGCTTCCAACTGCAACAACCTTTGTATTTTTGCCAGTTATCAAGCACCACAAGGGAGTTCAAA AGGCAAATGATTCAAAAACTTTCTATAATTTCCTCTACTTGACTCTAGTCCTTGCAGGGTTCCTCTTGGTAATGATCATA GTGCAAAAAGCTTTCAACTTTACAAAAAATGGATACTATGTCACTTCCACTGTGATGCTTCTCTTGCTAATCCTGCCACT TGTTGTTGTTATCATTGAAGAACAAAAGATTTGGAACGTGAAGCAAGAAAGCATCTATAGTGAAAATCCTCCTAAGCCTC TGAATATAACTTCAGAGATGCCAGATCTTCAGAAGCCAAATGCTTCCCAAGAAGGAGAAACTACCCAAAACCAAAAGCAA GTTTCATGTTGGAGAGACATGCTGAATCCCCCAAGAAGAGGTGAAGATCACACAATTCTTCAAGCCCTTTTCAGCCCTGA CATGGTGATTCTTTTCTTTGCCACAATTTGTGGACTTGGTGGGAGCCTCACTGTGGTAAACAACTTGAGCCAAATTGGGT TATCTTTAGGGTACCCTGCACATAGCATAACCACATTTGTGTCCCTCTTGGCAATTTGGATCTACATGGGTAAAATTGTG CAAGGTGTTGTCTCAGAGTACATCATAGCCAAGTATAAAGTCCCTAGGCCTATCATACTCACATTAATTCTTGTGTTATC TTGTTTTGGTCATCTTCTAATTGCTTTTAATGTCCCCAATGGTCTCTATGCAGCCTCAATTATTATTGGGTTCTGCTTTG GGGCAAATTGGCCATTGCTGTTTTCCATCATATCTGAACTTTTTGGGCTTAAATATTACTCAACTTTGTACAATGTTGGG TCAGTTGCAAGCCCAATTGGGTCATATTTGTTCAGTTTGAGGGTTGCAGGGTATTTGTATGACAAGGAAGGTAGAAGGCA AATGGAAGCATTGGGGTTGAAGAGGAAGCCAGGGGAAGAGTTGAATTGTAATGGGAGTGACTGTTACAGAAAGGCTTTCA TTATAATCACTGCAGTGACCTTGCTTGGGGCACTTGTGTCTCTCATTTTGGTGCACAGGACTAGAGAGTTTTATAAAAGT GACATATACAAAAAGTTCAGAGAAGAAGCTAAAAGTGTTGAAACTGAAATGAATGTGACTCAGAACAAGGTTGATCCTGC TGCAAATGAAGGATAG
Protein sequence (LotjaGi1g1v0727300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVFSTNHGGSVWQNSKGFTLQVLTGRWFMVFSSFMIMSVSGASYMFGLYSREIKSVLGYDQSTLTLLSFFKDLGANFGIL SGLVNEITPPWVVLTVGGVLNFFGYFMIWLAVTKKITKPQVWNMCLYIFIGANSHCSTNTGALVTSVKNFPGSRGIVLGL LSGYLGLSAAIITQLYYAFYGNDSKSLILLMAWLPTATTFVFLPVIKHHKGVQKANDSKTFYNFLYLTLVLAGFLLVMII VQKAFNFTKNGYYVTSTVMLLLLILPLVVVIIEEQKIWNVKQESIYSENPPKPLNITSEMPDLQKPNASQEGETTQNQKQ VSCWRDMLNPPRRGEDHTILQALFSPDMVILFFATICGLGGSLTVVNNLSQIGLSLGYPAHSITTFVSLLAIWIYMGKIV QGVVSEYIIAKYKVPRPIILTLILVLSCFGHLLIAFNVPNGLYAASIIIGFCFGANWPLLFSIISELFGLKYYSTLYNVG SVASPIGSYLFSLRVAGYLYDKEGRRQMEALGLKRKPGEELNCNGSDCYRKAFIIITAVTLLGALVSLILVHRTREFYKS DIYKKFREEAKSVETEMNVTQNKVDPAANEG
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 26 | 26 | - | – | |
| PANTHER | 8 | 591 | 584 | 0.0 | – | |
| PANTHER | 8 | 591 | 584 | 0.0 | – | |
| SUPERFAMILY | 21 | 214 | 194 | 5.1E-7 | ||
| CDD | 25 | 544 | 520 | 1.43237E-99 | – | |
| Pfam | 26 | 271 | 246 | 1.5E-86 | ||
| TMHMM | 27 | 49 | 23 | - | – | |
| Phobius | 27 | 50 | 24 | - | – | |
| Phobius | 51 | 61 | 11 | - | – | |
| Phobius | 62 | 84 | 23 | - | – | |
| Phobius | 85 | 89 | 5 | - | – | |
| Phobius | 90 | 112 | 23 | - | – | |
| TMHMM | 91 | 113 | 23 | - | – | |
| Phobius | 113 | 155 | 43 | - | – | |
| TMHMM | 155 | 177 | 23 | - | – | |
| Phobius | 156 | 180 | 25 | - | – | |
| Phobius | 181 | 185 | 5 | - | – | |
| Phobius | 186 | 203 | 18 | - | – | |
| TMHMM | 187 | 206 | 20 | - | – | |
| Phobius | 204 | 223 | 20 | - | – | |
| TMHMM | 219 | 241 | 23 | - | – | |
| Phobius | 224 | 245 | 22 | - | – | |
| SUPERFAMILY | 233 | 556 | 324 | 3.53E-23 | ||
| Phobius | 246 | 250 | 5 | - | – | |
| Phobius | 251 | 272 | 22 | - | – | |
| TMHMM | 251 | 273 | 23 | - | – | |
| Phobius | 273 | 347 | 75 | - | – | |
| MobiDBLite | 291 | 317 | 27 | - | – | |
| Gene3D | 336 | 559 | 224 | 1.5E-14 | – | |
| TMHMM | 342 | 364 | 23 | - | – | |
| Phobius | 348 | 366 | 19 | - | – | |
| Phobius | 367 | 377 | 11 | - | – | |
| TMHMM | 374 | 396 | 23 | - | – | |
| Phobius | 378 | 396 | 19 | - | – | |
| Phobius | 397 | 416 | 20 | - | – | |
| Phobius | 417 | 436 | 20 | - | – | |
| TMHMM | 417 | 436 | 20 | - | – | |
| Phobius | 437 | 441 | 5 | - | – | |
| TMHMM | 441 | 463 | 23 | - | – | |
| Phobius | 442 | 464 | 23 | - | – | |
| Phobius | 465 | 475 | 11 | - | – | |
| Phobius | 476 | 500 | 25 | - | – | |
| TMHMM | 476 | 498 | 23 | - | – | |
| Phobius | 501 | 531 | 31 | - | – | |
| Phobius | 532 | 551 | 20 | - | – | |
| TMHMM | 532 | 551 | 20 | - | – | |
| Phobius | 552 | 591 | 40 | - | – | |
| Coils | 563 | 583 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0727300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…