Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0727500 |
| Transcript ID | LotjaGi1g1v0727500.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | GTPase Der; TAIR: AT4G02790.1 GTP-binding family protein; Swiss-Prot: sp|Q8H1F6|DGP3_ARATH DAR GTPase 3, chloroplastic; TrEMBL-Plants: tr|V7CZS8|V7CZS8_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0727500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:129922610..129926328) extracted from Lotus japonicus Gifu genome v1.2.
AAAAACGTCCGCGGGGAGAGTTTGCCCCACCATGATGTGGATGTTCCCGGCTCGAGCAGGATTGTCTCCGAAGGAGGACA CCTGTCATTAAAATTAACATTGGGTATTTTTGTGATGAGAATGTTGCAGATAGTAGGGCTGAGAGGCCCTAGTTGGAGTG AAAATGGAATTGCCAATCCCAATAGCAATACATTTGATGGCTGTGAAGGAGAGAATAATCTTTGGTCTGAACTTGACACT GATCTTTATCATTGGACAAAGGCCTTACGCCCCGTGCAGGTATTTATGTATCCATCAATGTGCCTTGTTTTGTGTTACAT CATTGCATAACTTTTGTTAGGTTATTTATTCTTCCTTGGTATTGGGCAGTGGTTTCCTGGACATATTGCAAAAGCAGAAA AAGAGCTGAAGGAGCAGCTCAGGTTGATGGATGTTGTGATAGAGGTGCGGGACGGGCGAATTCCTATGTCCACAACTCAT CCTCAGGTAAGGTTTTTCTTCTGTCTTTTGAATTTTGTTGAGTATTGACTTAGAGTTAACATGAAAGTGTTTTGTGTTAA TTCTGTTCTCTGTACTCCTTGTGTTGACTTAAACCAATTGGCATTTGATTGAACTTTTTTGGGGTTTTTCTTCTCCTCTT CCCATTATTTAAAATCTATAAGGTGTTCTCGTTTTCCCTCTTGGTTAAGGAAATCAATACTTGTTTCTTGCAGTTCTCTA TTGTTGCTCTTGGCTTCTTTATCTGATAGGTACTTGCAGTCATTCTCCATGGCTTATTTGTTTGTTGAACATTATTTCTT CTGCCAATGTTAAAAATTGTTATGAATGTCACATGATACTTCTTAATGGGGCATAAAGTATTAGTGAATAGTGAGACCCT GCATCCAATTACAATATTTAGGCCTTAGTAGGAACTAGGAACTAGGACAATACATTTCAAGTTTTCAACTCTTCGTCTAA TTATTACTTCTGCTTTTATAGATGGATCTATGGCTTGGTAATAGAAAGAGAATTCTGGTTTTAAATAGAGAAGACATGAT ATCAACTGAAGACCGTAATGCTTGGGCAGAGTATTTTACTAGGAATGGCACAAAGGTTGTCTTCTCCAATGGGCAGCTTG GAATGGTATCCAAACAATTTTTTTTTTCTAGTTCTCGATGTTCTGAATGTTCTTGTACAAGATGTCTGATCCTATGTTGT AAGTACAGGGCACAATGAAGCTAGGCCGGTTAGCAAAGGAATTAGCAGCTAATGTAAATGTTAAACGCAGAGCCAAAGGA CTACTTCCTCGTGCGGTGGGTTGCTCCTAGAAATTGCAAACCAATTTTGGTTCTCTTTTATTCATTTCATATACTAGTTT TCTTGTAAAAGGACTACTTCTCTACCTCAAAGAATAAGGAAACATATCTTTTATTTGAGGAAGAAATAACTTATATTTCT GTATGCATGCTAATTTTTGGCAACACTCTTGTAATTTAAAAGGACCATTTTTTCATCTCAAAGAATTAGAAAAAATGTGT TTTATTAGAGAAAGAGAGGACTGAATACATACTCATTTTCACCACTCTCGTCCTCTCTTTCTTAGTTTCTTACAGCTTCT ATGCTCACTGATTTAAAATATTTTTCTGTAAATGGTATGAAATGTTATAGTTTTGCTGATTCCTTTTAGTAAATTGCATC TAGAGTGAAACAGAGGCTCAGGTAAATGGTATATAAAGAATAAAATTTGGTGATTTCTCTGTACAGTTTTCCCTTGCATT CCATCTATCTTGTGTTCCTTATTTTACAAGAAAAGAGGTGCCTTATCAGGTCATCAGTTAGTTACTTAGTTTTGCAGATT TTTAGTATTTTTTTAAATGAATATAATTGATTTTGGATAATTCTGATTCTTGAGTTAAATTTTCATGTTGCTTTGGCTTT TGGTTCGTAATACTACTCAAAATTATATTTTATTGATTATTGATATGCTCTATGGTAGTAGATTGGTCCTGAATCTGCAC GGAGCAAACTTGCCCTTTAATTGATAGCAAATCATTGTCATTCATGTGTAATGCTTCTCAAAGTATTATTTCTTATCACA ATTATTTAAAGAATGTATTTTACTGTTAAATAGGTTCGAGCTGGAATAGTTGGATATCCTAATGTTGGAAAATCATCTTT GATCAACCGTTTGTTGAAGCGAAGAATGTGCCCAGCAGCTCCTAGGCCAGGAGTAACTAGAGAATTGAGGTAAGTTGCTA ATTTTATTTATTTATATGTTGATGAATTTATTTGTAGTTTCTTTAACTTGTTACTTGACAGAAACCTTGGTACTGTTAAG TTTGTACTGTGTCTGATATTGAATGTTATCTATAACCCCCTCTGACCTCTAAAATGGCTAAAACTTGAACAAACTTCAAA ATCTAATGGGTGCAACCTGTTTCCTGACATCAGAACGATCTAATGCTGAAAAATATAGCTTATGTGGTTTTCTTTGCTCT CAACAGATGAAACGCTAATGGTGATATATTCTGTTTAAGTGCTAATCCTGCGAAAGTATATCACATTTAATTTGTTCTGA CTAAAATTCTGAGCTCAAACAGAAAATAGTGGTGGATTTCTTATTACTCATATACTGAAAATTCATAAATAATTATATTC CATTATTAATCTGATAGGTGGATTCGTTTTGGGAAAGATCTTGAACTTCTGGATTCTCCTGGGATTCTCCCGATGCGAAT CAGCGACCAGTCATCAGCTATCAAACTTGCCATATGTGATGACATTGGAGAGAGGTCCTATGATGTGACTGATGTTGCTG CAGTTCTTGTACAGATGCTAACAAAGCTTCCTGCAGTAGGTATGTATCATGACATGCAGCCAAAGTGGAATACCATTTTG GCTAACAAAAAAATGACAGGTTCTGTATCTCAGAGAATGGATGGGTTTCCTTGTCATAGTATCTTATTTAGAAGATCGAT GCTGAAAATTTTCTACTGCCATTTTGCATAGTGCTTCACTTTTTTTTCTTCCAATTTGTGTTAGGAACCAGAAAATCTAG ACGAAAGATTGAAGGAAAGAACGAAAAGAATGAAATTCTATAATAAAATTTAAGCATAGAAATGGAGAATGAATTCTCCC CTAGGATTTCCCCTTCTGAAAGGATATCTCCTTTTAATCACAAACTAATAATGATACTGAATGATCTCCTCTACTCTCTC TATCCCCTATTTATAAACCCTGCTTACTATTAACTAATCACAAAAAGATCCCCTAATTACTTTAAAAGTCCTTACTATTT TTCCCTTTCTTTTAAATCCTAACAGTTAGCATTCTGTAATTTTATATTCTAATCCAGGTTGGGATCAAGATTACATTGTT CAGTCCACCTTCCATCCTTCAAACTCGTATATAATTCTAAGTTTTTGTTCAATGCAGGTGGAGATGCTCTTCGTAAGCGA TACAAGATTAATGTAGATAGTCAGTGTGGTAAAACGTATGCCCGTATTTTTGTTTTCTCTAGTCACATTAATTTACTTGG TCAGACAGTGGTCATGTCTTCATATTTTTAAGTGATTTCTGCTTAATTTGATATCATGTATTGGCTAATTTGCAGGTTCG TAGAGAAGCTGGCGCTCCAATTGTTCAACGGAGATTTTCACCAAGCATCATTTCGGGTTTTGTCAGATTTTAGAAAAGGT AAGTTTGGTTGGACTGCACTGGAGAGGCCTCCTAGGTGA
CDS sequence (LotjaGi1g1v0727500.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGAATGTTGCAGATAGTAGGGCTGAGAGGCCCTAGTTGGAGTGAAAATGGAATTGCCAATCCCAATAGCAATACATT TGATGGCTGTGAAGGAGAGAATAATCTTTGGTCTGAACTTGACACTGATCTTTATCATTGGACAAAGGCCTTACGCCCCG TGCAGTGGTTTCCTGGACATATTGCAAAAGCAGAAAAAGAGCTGAAGGAGCAGCTCAGGTTGATGGATGTTGTGATAGAG GTGCGGGACGGGCGAATTCCTATGTCCACAACTCATCCTCAGATGGATCTATGGCTTGGTAATAGAAAGAGAATTCTGGT TTTAAATAGAGAAGACATGATATCAACTGAAGACCGTAATGCTTGGGCAGAGTATTTTACTAGGAATGGCACAAAGGTTG TCTTCTCCAATGGGCAGCTTGGAATGGGCACAATGAAGCTAGGCCGGTTAGCAAAGGAATTAGCAGCTAATGTAAATGTT AAACGCAGAGCCAAAGGACTACTTCCTCGTGCGGTTCGAGCTGGAATAGTTGGATATCCTAATGTTGGAAAATCATCTTT GATCAACCGTTTGTTGAAGCGAAGAATGTGCCCAGCAGCTCCTAGGCCAGGAGTAACTAGAGAATTGAGGTGGATTCGTT TTGGGAAAGATCTTGAACTTCTGGATTCTCCTGGGATTCTCCCGATGCGAATCAGCGACCAGTCATCAGCTATCAAACTT GCCATATGTGATGACATTGGAGAGAGGTCCTATGATGTGACTGATGTTGCTGCAGTTCTTGTACAGATGCTAACAAAGCT TCCTGCAGTAGGTGGAGATGCTCTTCGTAAGCGATACAAGATTAATGTAGATAGTCAGTGTGGTAAAACGTTCGTAGAGA AGCTGGCGCTCCAATTGTTCAACGGAGATTTTCACCAAGCATCATTTCGGGTTTTGTCAGATTTTAGAAAAGGTAAGTTT GGTTGGACTGCACTGGAGAGGCCTCCTAGGTGA
Protein sequence (LotjaGi1g1v0727500.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MRMLQIVGLRGPSWSENGIANPNSNTFDGCEGENNLWSELDTDLYHWTKALRPVQWFPGHIAKAEKELKEQLRLMDVVIE VRDGRIPMSTTHPQMDLWLGNRKRILVLNREDMISTEDRNAWAEYFTRNGTKVVFSNGQLGMGTMKLGRLAKELAANVNV KRRAKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRELRWIRFGKDLELLDSPGILPMRISDQSSAIKL AICDDIGERSYDVTDVAAVLVQMLTKLPAVGGDALRKRYKINVDSQCGKTFVEKLALQLFNGDFHQASFRVLSDFRKGKF GWTALERPPR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 29 | 330 | 302 | 6.2E-169 | – | |
| PANTHER | 29 | 330 | 302 | 6.2E-169 | – | |
| PIRSF | 52 | 330 | 279 | 3.1E-70 | ||
| Gene3D | 54 | 227 | 174 | 5.8E-43 | – | |
| TIGRFAM | 54 | 326 | 273 | 4.3E-81 | ||
| CDD | 56 | 227 | 172 | 3.75987E-80 | – | |
| SUPERFAMILY | 60 | 243 | 184 | 4.13E-40 | ||
| PRINTS | 174 | 194 | 21 | 1.3E-6 | ||
| Pfam | 174 | 244 | 71 | 1.9E-15 | ||
| PRINTS | 220 | 235 | 16 | 1.3E-6 | ||
| Gene3D | 232 | 320 | 89 | 8.1E-10 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | GTP binding | Interacting selectively and non-covalently with GTP, guanosine triphosphate. |
Expression pattern of LotjaGi1g1v0727500.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…