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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0728300 |
| Transcript ID | LotjaGi1g1v0728300.2 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Protein translocase secy subunit, putative; TAIR: AT2G31530.1 SecY protein transport family protein; Swiss-Prot: sp|F4IQV7|SCY2_ARATH Preprotein translocase subunit SCY2, chloroplastic; TrEMBL-Plants: tr|A0A0R0EYD4|A0A0R0EYD4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0728300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:129996412..130003617) extracted from Lotus japonicus Gifu genome v1.2.
AAAATTATCCTCCGCGAGCGTGCAACCATAGAAGCAAAACAACGACGCACACGGATGCGGGTTTAACCGCCACTACTGCA TAAACCCCACCTCTTCACTCACTCACTCACCCAGTGTTCCGAACTTCAGCCATGGAAGCAGCAACGCGATTCTCTCCGAA TCACTTCCTCCCCCACCACCACACCTTCCAAACAAAACCCAACGCCCTTCCACGACGAACACCACCACACAGAATCACCT TCCACCGAATCGGAACACCTAGGGTTTCCCTTCTCAACAATTTCCCTTCCCTCAACCGCTCTTTGTCTCACCGGAGGACT CTCTCCGTCAACTTCTTCGACCGGCTCCGGAGCGACTCTGTTGAAGCCGAATCTCCGAATGAGGAAGTTGTTCTGCTGCC GAGTCGCGGCGGCGACGGAGGGGAAGCGGTTGTGCCGACGGGAGATCTTCAGTTGAAACCTAGAATGTTTAGAAATAGGT TTCTGAACTTCGTGCGGTTCGGGTCTGTGATTAACGGTGCTGCTGAGTCGTTTTTCAAGAGCGAGATTCGGAGGAGGCTG TTTGTGACTGCTGTGTTGATTGTGATAAGCCGTGTTGGGTATTTCATTCCTCTTCCTGGGTTTGACAGGAGGTTGATACC GCAAGATTACATGAGCTTTGTTTCTGGATCTTCTGTTGGTGAGTTGCATTTCTTTGCGTTGAATTTGATGCCCGTTTTTG GTTTTCAATGGAAATTGAATGGTGTTTGTTTTGAAACTGCTGTAAACCCAAAAGGGTCACTAATTTGAATGGAAAAATTG CGAGGGGGAATTGGGTGTCTGTTCAAGGTAGCTAGTGAATGTGAAGTGGAAATGGGAATTTTGAACCATGGTTAATCTAA TGTATTTTGGTAGTCTAGTTTTTTTACTTGGATATTTTTATGAGTTTATTATACATGAGAACCGCCATTTATGTAGCTTC TGGCAGATGAACTTGGTGACTTCTCTTCTGAGCTCAAGCTATCGCTTTTCCAGCTTGGAATCAGTCCTCAGATAATAGCT TCCATTATCATGCAGGTACGCTACCATACGCCCTTTTCAGTTATTTAGTTTGTTGGGAAAATTCTTTTTTGTTACTCTTT AGGCCGAAGGGTATATAAGATTCTCATTTCTATGATCTTTTGCAAGAGGTTTAAGAGACATCCTAAAGTCTGTGATAGTA ATTACTATTATATACGAAATATGTGGTGCTCCTCTTTTGAAATGAAATAGACATTTGAAAATGTTGCTATTTAAGGAAAT GATTATCTTGTAAGTAAGTATCTTTGAACAAAGAACCGTTTCTCTTGCTATTATTTTAAATGTGAAGTACTTGGTTGTCA AAAGTACTGAGGTATATATGTGATACCCAATTTCGTGTGCATGCTCTTTCTATTTTTTGAAGTTTTGGCCTTTCATGAAC TGTATTTATCCAAGATATTCATGTGCAGGTGCTCTGTCATGTTGTTCCTTCTCTAGTAAAGCTGAGGAAAGAAGGTCTGG ATGGGCAGGAGAAGATTAAGAGTTATATGTGGGTCTATTTATCCATCTTGAGCAGTGAGCTAATCTCTTGCTAAATAATG TCTTCTATTTCACTTTACCTGATTTGTGATTTAAGGAATTTCAACTAACAAATTGTTCTCGTGTTCTTCTCTTTTCAGAT GGTGGATGTCGTTTGGCTTTGCGATTTTGGAAGCTCTAATAGTTTCTTGCTACTCACTTCAATACTCAATTTATGCTGCT AGTCATAGGTAATCTTCTTCGAAGAATAGTATACAAGCAAGATTTCAATCATCTACAAAGAATTGAACTACCTTTGTTTT CCTCACAAGTTGATATCATAATTCTTAAGTATGGGTAAACTGATGGTTTCTTTTCCATATATTGTAATCCCAACTGATTT CTCTGTATAGTTTTACCATCAGTGGACATATCAGTGCCATTGGCTTTCATTCAATTATGAAATTATCTTCCTAAATTTGT TTCTTTGTTTTATACATTATGATATGGATCTCATTCTCTTTGCTTGTTTATTTATCATTATTTTATTGAGTCATAAATAA GGTGGAAAGTCTGTTGCCTCAAATTCTGTGTAGATAGTTTGGTTTCTGCTAAACTATTTCGTACTTTGCAGGGTCAAACA TGTCATGGTGACAAGTTCGTTGTTGGTTTGTGGTGCAATGACTACTACATGGATATGTGATACCATATCAGAATCTGGAT TTGGTATTTTCCTTACCACAAAACAGTTTCTTTATCATTCTTGTTTTTGTTGTGGAAATGAAATTTAAAAGATAATCAGA GCATATAGTGGCAAGACATTGATAAATATCAAATTCGTATTTGTAACGCTAGTAATGTTGCTTAATTGACAAGTCTTTTA GTTTGGAGTTACAAGTCTTATTTAATTTTAAACAATGACTGACAACAAATGAGTTTTTACCCATTTGTACTGGTGCAGAT TGTAACCTACAAATATGCTAGTGTATCTTTCTAAATCATTTATCTATTCAAGATGGGAATTTTCTATTTTTTTATTTATT TAATTTGGCATGCTACTTTGATGATACATGTGTGGTCTATACTACTATGAAAATAACTTTCCTTCACTTGGTATCCAATC CCTCTCCTTCTGAAGCCTAGTATTTTGTTTTATATGATTGAATAGAAAGGTGAAAATTGTGCTTCCAAATTAATGGCGTA GCCCGATGTATTTTATTACCCACTTCCCACTTTTAATTTTTTTTAAAAATTTATAAATTATATTTACATTTACAATTTAT TGTTAGTTTTCATTCAGAATATGAAATTTAAAGAGAAAGTTGTCACATTTTTTATTGTTTAAGTAAAATTTATATGTTAT ATAATATATACTTTATCAAGGGTCCTGTTGCTTGTTTGGTAAAACCGTAAAAAATTTAAAACAAAAATTCTAGAAATCTG AGGGACACCAGAAATCATAATTAATCTGACATTGTTAGTTTTAGCTGATCTGGTATACTTTACTGTCTAATCTCTCTACC ACAATGCAAAAGATTGGGCTGACGTTGATTATTTCCTCTACTTAACTCAGTTAAGTTATTTGAAAGGCACATCAAATGTT GGATTTTTTATTTTATCATTCAATTCCTTCTGCCGTGACTGATAATGCCTTCTTCAGGTCAGGGTTCGTCTCTTATCATA TGTGTCGGAATACTGACGGGTTACATGGAAACATTGCACAAAATGCTTACTCAGCTTTCAGGTACATGACATGATGCAAA TTAAAGCTTTTGAAATTTCGTCCCATCTCCCTTTCACTTGCATTTATCATTCTCAAGCTTAATATCCAATTAAAATTTTG ACCACTTTAGGTTTTCTTTTGAGATGTGTATTTTATTAAATGTTTTATCTTGAAGATGATAGAATCTGTTTCATACATGG CCAAAAATAAAGTGAAAAATAGGCCCAAATAGGTCAGAAATAAATTATTTTGGAGGAACTTTTGGATTACCAACTGATTT GACCAGCATACTGAAGTGAATAAGATTGCAGCCGAAATGTTGAATTTGCTCAAAACTGCAATTTAGTTTGGCCTATATGA GAGCATATATACTTAATTTTACAAGGATGATATTACTTCTTGAATCAGGTGAAAATAAATAAAGTTATACGATCATATTT ATCTCATGGAATCATTTGTAACTTAACTGATTCATTTCTTGGTATTGCAGTGAGTTCTGTGAGTTGGTTGCCATATGTGC TTGCAGTATTGGGTATCTTCACCACAGTCACTATGTGGGCAGTTGTAGTAACTGAAGGTTGCAGGAAAGTAAAGCTTCAG TACTATGGTTTTAAACTTGCTTCTGCTGCAAGGTAATCACATTATCTTTGTCCAGACAGTTGAACCTTGTTCACCTCCTT GAGTGTCTACATGTTTGATATTGTCTCAACTCAATTGTAAAGTGGTACTTAACATTTTATGATATAGGAAAGTTGTTCCG CACCTGTGCCTGAAAAAGCATGACATTCTGTTGCTGTGTGTTGTACCTCCTTTGTTTAACAAATAACTAACATCAGACTT AGCTTATATATTTAATAGAATATTGTCCTTATTTATTATTCTGATTGTTTGTATGTCTTTCTGAAGGAATTATATGATAA TCTTGAGTGTACTGATGCTGGCAATTGATATTTTCTTGTTTTACAATTGAAACAGGGAGCAATCACCAATTACTGAAGTG GAGCCCTATATTCCTTTCAATATAAATCCAGCAGGGATGCAACCTGTTCTTACCACCTCTTACCTCTTGGCATTTCCAAG TATTGTCGCAGGGTTTGTATATTCTGTTTAGTAATTCAACTGATATTCTTGGTTCAATCTCATGATAAAAAAATTGATAG TGTCTTATCTTGCTTGCTCTTCTCTTTCTGTTTGCTAGGTAACACATTTACCTGTTGCTTGTCATATTTTCTGTGTAAAA GAGTGTCATTTCCATTTTGTATGTACTATTTTCGTGTGAAGTACAATTTTTGAAATTTCTATGGATTTGCAGTCTGCTTC AGTCACCTTTTTGGGAGCATGTCAAGGAAATGTTGAACCCTGAAACTTCAATTGGTGCTGAGCCGTGGGTCTACTATTCC ATATATGCATTTTTTGTATTCCTGTTCAACATATTTGATATTGTAAGTTCTCTCTGCTGCTAGTATATTATTGTACATTC TACTTCATATGAGGAGTTTTCACTCTGTATTCTCAATTCTGAATTCCATTTTAATATAAGCTATTGTTTTTTGAAAAATA TATGAAAAGATAGTAGATGGATTAAATAGGTTCATAACACATAAATGATCCATGCCATAAAGACTCAACAAGGTTTTATG TTGGTTGTTGACTACCTAACCAATGGTTCTGAAACGGAAACATTAAAGAAGTTAATTGCTTAAGAGTATAACAAAAGAGC ACTTCTATTACTAAAATTAGTTTTGACAAAGTTCACATAATAGGTCCCAGAATGTTTGATGTAGCCCATTATTTCAAATT TTAGTTGCCACGGCATACTTGACTCTTAATTATGCAAAACTTCAACCAAATTTTCAGACTATAACTGTTTAAGTAACTTA AAACTAAACCATTGTGTGGAGCGAAGTGGTTGTTTCCTTGCACTGTTGTAGGCCAAATTCGATTTTAAATGAAAATATGT ATGGGAACAAGGGAGAAAAAGATGTCAAAGCTGTTCCTCATGTTTCTATACAATGATCTGAATCCTGTGCTTCCCTTTCA GATTAATTTTCAACTGAATTAACATCCATGTATTGTAAAGCTGTCAAATTCTTAGTTTGACAGTTTCCATAATATGTTAA AATACCAGAATGACTAGTATGTATCTTATAAATGGCCTTCTAATGTGAACATGTGATTGTGGACAGGCTAACTTGCCAAA GGAAATTGCTGATTACTTAAATAAGATGGGTGCAAGAATACCCAACATAAAGCCTGGGAAGGCTACTATAGAATACCTCT CAAAGGTTCAGGCATCCACACGATTTTGGGGTATGTTATTGGTGCAAGCAGTAGTTTTAGCCTCATTTATGTGTCTGTCA ATTCGAATTTTATATTGCAAGTTGATGTTAATATTTTAAACTGCGGAAATTTGCAGGAGGCCTACTATTAAGTGTTTTGG CCACTACATCAACTGTTCTGGACCACTATTTGCGGCGTATCAATGCTGGATTTGCTATTGGTTTCACATCAGTTCTAATT ATTGTAAGTGCAAGAAGGATTCTTGTAATTGTACTTTACATGCAAACTCAATTACAGTACACACAGGCATGCAAGATATT CATGCCACTATACCGTCTTCATTTAATTGTTTGAATTAATGGGTAAATTCTAGTTGGAAGCATAAATTCGGCCTGTTATG TTGAGTCCCATGCATGTCACGTTGTACCCTGATCGGTTGTATTTTGAATTTGTCCTTTCTACCATCCTTCTAAAAAAAGT CATTTCTCTTGGGTATTAAGAGGATTCTCATAAAGTTTCCCCCCCTACAGAAAAAAATGGGTTTCATTCTGGTGTTATAC TTCTTTCTACAGTATTACATTTGAAATATAATTTTTTTTCCAGATAAACCGTCAAGTGGTTGGTTCACATGCCTAGTCTG TTACAGTTTTACTGAGTAGCCTTTGCTTTTGTGGGTCCAGGTGGGTTCCATTATTGAACTTAGAAGATCGTATCAAGCAT ATAATGTGATGCCAAGCTTAAGCAATGCTTTGAGACGTTATGGTGTATAACTTATGGAAAAGCTATGCTCCCATTCGACT ACCATTTCACTTAAACCTCAAGGATAGCTCTCTGGTCAGCATTGGTAAGTAGTACAACTATTTGTGTGCACAGATTTTTT AATTGTGATAATTGATCAACACTATCTATTGTGGAAATTTCCAGGAAGCTCTGTTTTTCAGGGCAATAAATCTAGTTTGT GGGTCTGAGTATTGAGGTCAGCTAGCAGTGCTAGTAACAAGGTGCTAAATGCTGCCTGTTGGTAGTAGCTGATTCAGAAG CCTCATTTTCCGATTTCTCTCTAAAGAGAATTTTTTTTAATGGTTTTAGACATTGAGGGAAGTATTTAGTTAGGTTATAG TTGTAGCTACAGCTGAGATCTGTACAGGAAAATCCTTGTTTGTTATAAAGGTGATATGTAATGTAAAAACAATGCACTTG GATATAGTATGTTAAATGTCTTTATAGTGGGTTCTTATCCTAGAAAAAAACAAAATCATTAGAGATTGACTATCTGCGTT TTAAGCTGCATTGTATCCGCCGCCTTTGTAATGAATGATCTACGAGAGCCTTTTAGCACCATGCAATGGAAGAGCTTGAT GATGACCCATCAAAAGACATCTAACTTCTAAGCACTATGCAATTGGAGAGCTTGTTTTGCTTCGTTTCCCAGCTCATGAC TCGTTTTTGGCTAAAGGAACTGGTTTTAAACATTCCCCTACGAAGGACAGATTTATTCCAAATGAATTATGACTAAGGAT TGTAAACTGAGTTCTTGTATTATGGTATTATAACCCTGCTCATCTGTTGTTAATTGTAAATTTGAACCCATGTTCCTCCT AGTCCTACCAAACTTATGGTACCAGCAACTTGTGTAAACTCTTGCAATTTTGCGATGGAGCTGAAATGTTGATAATTAGA TTGCTT
CDS sequence (LotjaGi1g1v0728300.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAAGCAGCAACGCGATTCTCTCCGAATCACTTCCTCCCCCACCACCACACCTTCCAAACAAAACCCAACGCCCTTCC ACGACGAACACCACCACACAGAATCACCTTCCACCGAATCGGAACACCTAGGGTTTCCCTTCTCAACAATTTCCCTTCCC TCAACCGCTCTTTGTCTCACCGGAGGACTCTCTCCGTCAACTTCTTCGACCGGCTCCGGAGCGACTCTGTTGAAGCCGAA TCTCCGAATGAGGAAGTTGTTCTGCTGCCGAGTCGCGGCGGCGACGGAGGGGAAGCGGTTGTGCCGACGGGAGATCTTCA GTTGAAACCTAGAATGTTTAGAAATAGGTTTCTGAACTTCGTGCGGTTCGGGTCTGTGATTAACGGTGCTGCTGAGTCGT TTTTCAAGAGCGAGATTCGGAGGAGGCTGTTTGTGACTGCTGTGTTGATTGTGATAAGCCGTGTTGGGTATTTCATTCCT CTTCCTGGGTTTGACAGGAGGTTGATACCGCAAGATTACATGAGCTTTGTTTCTGGATCTTCTGTTGCTTCTGGCAGATG A
Protein sequence (LotjaGi1g1v0728300.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEAATRFSPNHFLPHHHTFQTKPNALPRRTPPHRITFHRIGTPRVSLLNNFPSLNRSLSHRRTLSVNFFDRLRSDSVEAE SPNEEVVLLPSRGGDGGEAVVPTGDLQLKPRMFRNRFLNFVRFGSVINGAAESFFKSEIRRRLFVTAVLIVISRVGYFIP LPGFDRRLIPQDYMSFVSGSSVASGR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 142 | 142 | - | – | |
| MobiDBLite | 1 | 32 | 32 | - | – | |
| PANTHER | 108 | 182 | 75 | 1.4E-23 | – | |
| PANTHER | 108 | 182 | 75 | 1.4E-23 | ||
| SUPERFAMILY | 123 | 172 | 50 | 3.92E-7 | ||
| Gene3D | 126 | 185 | 60 | 2.1E-6 | ||
| TMHMM | 142 | 164 | 23 | - | – | |
| Phobius | 143 | 164 | 22 | - | – | |
| Phobius | 165 | 186 | 22 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Protein transport | The directed movement of proteins into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. | ||
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. |
Expression pattern of LotjaGi1g1v0728300.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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