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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0728600 |
| Transcript ID | LotjaGi1g1v0728600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Protein trichome birefringence; TAIR: AT3G06080.2 trichome birefringence-like protein (DUF828); Swiss-Prot: sp|Q9LDG2|TBL10_ARATH Protein trichome birefringence-like 10; TrEMBL-Plants: tr|I1N9G3|I1N9G3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0728600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:130025478..130031969) extracted from Lotus japonicus Gifu genome v1.2.
CCTGTTAATGGTTTTATTTTTGTTACATCGGAAAGATAAATTGCACTAACTAGAAATCGACCAATGGACCCCCCTACCCA ACCCTATGTCCCTCAACTCCTACCACTTGAGCTATCTTAATGTCTCGTTAATGGTAATCAGAAATAAATCCATCCGCTTT CAAAAAAATGTAAAATAATACGTGGCTCAAAATTGAAAAATTTAGAAAAATTATTAAATTCATAAAATAAAAAATTAGCA CATTATCACCACCCTTTTTGCCAATTGAGTCAAGTGCCACTAGTTGACAATTAATTGGTGAGTTTGAATCTCCCACTAAC TTTTTTAAAAAAATATGATGAATTTTAAGTTTTTAAGATTGAGATTAATTTGTTCAAAAAGTTTGCCACATTCAAGATTA ACATGTCCAATGTTTATATCACGTTAGCATTTAACAGTCATACCTGTCATATAAACTAACTTGTTTAACTATCGCCGCAC TCAGAAACTACATAACATATTTCCTCATACAACCTCAGCATTTAACGCATAGTTCATGGACCGACTAACTAATCAGCGTG TTCCACATTCAAGGACCGAAATGACTATTTACCAAAAAAATTCTTAAAAAATTGCCGCCCTAAACCCAAAAGAATAGCAA AAAGAAAAGAATCCCACTCCCCCAAATTCTGCCCCTCTCCGCCACCATTTATTGGTGCCTATCCGCCATACATACCCCAC CACTACCCACATACACTTTTTCAATCTCCCTTCACCTTCTTCTTCTTCTTCTCATGCTTCTCTGCCATTAATGCTTCTTC CCATTTTGCTTCTATACTATACCCCACTTTCCCTTTCACAACCCCACCTCTCTTAAACCTTCAACTTGTACTTCGAATGA TTGTTCTTCTATAAGAACCAAAACCAAACGAAAACTCAACTCCATGAACAAGAAGAATCCAACACCACCACCATGACCCA CTTGGATTTCCTCAAGAAATTCAAGCGCTATAGCCCTCTAGACCCTTCTCTGAGTTTCTTCTTCGCTGCCCTTCTCTTCA TTGCCTGCTTCTTCTACCTTGATTATGGTGGGTTTCGCTCTAGGGGCACCACTCTCCTCGCCGTGCACTTCTCCTCCTCC CCCGTGCCGTTCTCTTCATCTTCTTCATCTGTTCAGTTTCTGGGTCAAGATGGTGATGGGTGTGATGTGTTTGATGGGAA CTGGGTTTGGGATGAGACTTACCCACTTTACCATTCTGCTAACTGTTCCTTCTTGGATCAAGGCTTTCGCTGCTCTGAGA ATGGTAGGCCTGATGCCTTTTATACCAAGTGGCGATGGCAGCCCAAGGATTGCAACTTGCCAAGGTTTTAACCCACCCCT TTTGTTCCTTTTTGTTCCTTTTTGGTCTGATTTGTTTATTGAAGCTTGCTTTTGTGTTTTGTTTTGATTATGGTTGGTAG AAGGTAGTGCTAAGAATAGTGAAGAAAAAAGGTTTTGTTTGTTGGCTATCAATGTTTGTTTGTGCTGTTTCTCTGATCAC AAATGATTTTAGAGTTTTGTTTGCTTATAGGATGAGCTCCATTCATATGCTTCCGTGTAGATTGAGATCATTCTATTTCG ATGAGTTAGTAGCTACCCTTTTGTTTAACTTGTGATTAGCTATTGAGTATTTGATGTAAATCGGTAACGATCAAGTGTTT GTTCTTTTTTGGCTTTTTTTTGTGTGTGTTGCTGAGATTGTAGAAAAGGGTGTTGAGTGTTGGTATGAAGTAAATTAGGA TGTTGAGTTTGTATCAGCTATTTTGAATGAATGAAGAAGGACCTTTTTGTTATTCCTTTCTTCAAGTGGTGTGCCTAAAT TGTCATTGTCTGCTGTTTCCTATTTCACTTGTCATTACCTGCCTTTCCATAAACTCTGGCGTATGGATCAAGCTCAATAG CTACTCAGAGTGTCTATTTTTCTTTATCCCAAAAGGAAGAAATTAAATAAATTTTTATTTAGGGGTAAGCTCTTTTTGTG TTTCTACTCTTAATTGGACACCTTGTCTTGCACTCAACTGTTTTTTGATTTGCATCTTATGGATCATTTTGCTTGTGTAT ACAGCGTACTATATTCAGTTCTTTTAACTAGGTTCTTGGAATTTAATATATTGTGGGGCTTTACTCTTGTAACAGATTTG AAGCAAGGAATATGTTGGAAAAGCTACGGAACAAGCGGCTAGTTTTTGTTGGTGATTCAATTGGAAGGAATCAATGGGAA TCACTCCTTTGTATGCTCTCTTCTGCCATTAAAAACAAGAGTGCTGTCTACGAGGTTAATGGGAGCCCAATCACGAAACA CATGGGCGTCTTGGCGTTCAAGTTTGAAGATTTCAACTGCACCGTTGAATACTACAGGTCACCATTTCTAGTAGTACAAG GACGGCCTCCACCTGGAGCACCTAAAGAGGTAAAAATGACTCTGAGAGTGGATCGCATGGACTGGATATCTCATCACTGG AGAGATGCAGATGTGTTGGTTCTCAATGCTGGACACTGGTGGAATTATGAGAAGACTCTGAAACTGTAAGTATTTTGTTA TTACACTCAACTGGACTGTTATTCTTAAAATTAAATCTTGAAGTGACCCTCCATTTTGGAATTTTAATTACTAATACAGT TTATACAAATAAAGGTGAGGTTTCTAAGAAGAGAATTTATTATGATAGATTGAATTCTTTCTTACTTTGGTTTAGATGCT TACAAGCCGCTGCTTTCATTGCGCTGAAAGCTTATAAAGGGACTAACATATTTTTTGATACAAGTGTTTTGGCCGCAATA CTCCTTTTTCGATACAAAAACTGTTTGGAAGATTGAACACATGAAATTGATTATTTAAGAGTTCAATTTCACTTAAGGAG GAAGTCATATAAAAAATATTTGATTGGTAAAATTAACAATCTCAGCAACAATAATACATGTAGTAGAAGATAAAGAGGTC AGAAGAAATCTATTACTTTAACCGCGAAAGGGATCAAAGCAAATCCTCTATGCACCTCATTTGCGAGGGTAATAATGACA CTGCCATGTTCATTGCTCAGATGAAGAAATTTTGCAATGCAGGGGCAGTGACAGTGTTCACTATAGTATCCACAAACTAC TTTAAATTTTGCCTGGATATGCTTATATACATAAGTTATGGTTATCTGTGCTTTATTATCTCCATGGTATCAAAAAGCAT GGAGTAGCATATATTACTTTGTTAAATTTTTTACTCCATATGTGGTTAAGCTGTCAATATAATGTGACTAGTGTCAAAAA ATCAATATAATGTGACTTTGATCTTGGGCTCATTGTTTTACTTAGGGGCTGTTACTTCCAATTAGGGGTGGAAGTGAAGA TGAATATGACTACAGAGGATGCGTTCAGAAAATCAGTTCAGACTGTAGTTGATTGGATTGCTAGTGAAGTAAACACAAAC AAAACTTATGTCCTTTTCCGAACTTATGCTCCTGTGCACTTCAGGTTTGTGTAATCTTTCAAATGGATTTGCCTATGCTT GTGTCTGTGTTTTGTCTGTCAATAATTTTCTAATGGCAAACTCAGTTACAGTGCTCCTCCTCCAATATATTTATTAGCGT TGATGAACTGACATTGGTTTAAACTCAAAAAAACTATACTGTTACATGGCTCTTTTTAGCACCTTTTTTTTTACTACAAA ATTTGCGTTTGCTTTCCAACCACATTAGCTGCATGATAGGAAACTGTTGATGAATAATTTCTCTGTACCTGTAATGATTA ATGACTGCTAACTTATGGATAAAGATATGAATGGTCCATAACACATGATGGATGGTGCAGGGGTGGTAATTGGAACACCG GTGGTGGTTGTAACTTGGAAACGCTACCTGATCTTGGCTCCATCCCTGAAGTCTCTGACATGCATTTCAGAACTGTCTTT GATGTCTTATCAGAGCACACGAGTAAATCTAGAGTTTTGAAGTTAGACTTGCTTAATGTCACCCAAATGTCGTCACGCAG GAAAGATGGCCATGCATCTATTTACTACCTTGGGCAAGACAAGGGCCCAGCCTCTATGCAGCGGCAAGATTGCAGCCATT GGTGCCTCCCCGGTGTTCCCGATTCATGGAATGAGATTCTTTACGCACTTCTTCTTAAGCGGGAGGCCTTTCGCGAACGG ACTACGGCTTTTCGCGAACGGAATACAACAAGAGTTTCTCAAGTTTCAGTATAATCAGTCTATACAGTTTGCAAAGAACA TGCTTATACAAACATTTGCCAACTCTTGCTGTGCTGCCATCTCTATCATTGATCAATGATGTGAAGCTTGAAGTTGATTT TGGCATCAGTGGTCAGTCTCATAGTTAGTGCGTCTAACTAATTTGTGTTCTCAAGTGAAGCGCATCTACAATTAATTCTG AAATCATACCGAGTTCTTGAAAGAAGTTTTTGTGAATAGCTTCTAAATTTCAGAACTGATTCAAGAGAACCCGATTCAAA CATGTTAGAAGTAGGTCCTAAGCTATTCTAATTTCCTTCAAAATGATTGATTGATGACCCTCTTTGTAGTGGTCTGCCAT TGTAGGTGAACACACCCACATGGGAACTTATGTTGGATTTTGAATTTCAGGGATAGCTTTTGTAGGGGAAAAATACATAT ACACTGGATCAGAATTCAGAAGGCATATATACAACTTTTTTTTTCTCTGTTTTGTTGTAAATTTCATATTACTTTGGTCT TCAAAAGTGTAGTAGACATTATTGAGTCCTTGATGTTTCGGTTTGTACATAGTATATAGAAAGTCCTTGGTTTATTTTTT GTTGGAAAAACGCTATAATTCATATAAACAAATGCATTGGAATAATTCCTCTGCATGGTGCTTGGAGTTTTCTGACAATC CATTAACTTGAACTGTGATCCGGGAAGATCGTTACGCCTCTATCATTGGTTCATGCATAACCTTGTACAAGTTCCAAGAT TGTTTTGTACGTGAAGCTTCAAAAATCAAACTTTTTATTTGTATTTTCAATTCCCTTTGAATAATGCTTATACGTTGTTG AATATTAATTTTCTTGAAATTGACATTATGCACTTTGCTTGAACCGCACTCTGCACATTTTTGTAGTCTTCATCCACGAA GTTTCTTTCAATATTGACATCGCTTAGGTGTGAGAAGATTTTATTTCAACTTAACTTATTGCATAACCACGTATGTAAGT GTTTGATTAAGCTAGTGAAAATAACTTACGATTTATTTACAAGTTGTTTTGAGATTATCATTATAAATTGGTTAGACTAG TTTGTAAATGAGTGTTTAATTGAGCTCTATACCTAAACGCATTCTTAATTAATAACCGAGTTTGAGGCTGAAATTTTCCT TGAATAATGTATCATGCCAATTGGATCATGTTCTGAGTGTTGAATACAAAATTGACTCAAAAGCTGTGACCAGAATCTTG TATTTCAAAAGCTGATATTAGTAGCTTTTAGTGTCTCAGAAGCAAACACATTCAATTCTTGTAGAATACATTTGATTTCG AGAATTCAAGGTTAGACTCAATAATTTTTTAAAATCTACTTTAAAAAGACATTTTATTCTCCCAAAAAAATCAAATCAAG TGAGGTATATTGAGCAATTTACCTTTTGACCTTTTGAAAATTTTAAATCAAGCAACCGACATCTTATTTAACATGCATAG TGTTCCTAGACTATAAAAAAGGGGAACAAAACAAGGAGAAGATGATACTCAAAACTAGACTGGTAAATCACACTACAAAG TGAGAGTATTAGTTACAAAACAAAAACCTTTCAGATGAAATCTTGAAAACCAATGCATACATAGCTCCAACCTTTTGTTT CTAATGCAGGATAGATAGTAGATTCTCACGTTGAAATGAGAATTGATTTTGGAAGAAGTCAAACTACTTCTAGTTGCTTT TGTGTGAGCAGAAGGGATTTTGAAAGATTTGAACGTGAATCCAAACATGCTAATCGTCAAACGGGTATTGCTCGTACCTG AGTGAACAATCACGGAGCACCGAGCGAGCGCCTACCCGTGGCGTCCGACATGTGTCATATATGTCCTGTATAGCAGCTCC AAGACAGGTTTTACAGTCAGAGGACGTGAGATTGAGGTTGCAAGAAGCATGACCATAGGCAAATGCATTAGGATAAGGTG AAATGTTGTGGTAGTCATAATTCTTATGAGCTGGAGTTTGTGTTTCTAAGTCGCTAAGGACATAGCTTAAGCTAATTGCA AAAGGGTCCCCTGAGGTGTAGGTGACACCGTTGCAGAGAACGTTGGTGATGTTGGTGTTGGGAACACTATCAGCAACACT CCACAACAGGCAAAACAACAAACCAATCACAGTTGACAAGTGTATTGGAGGGAGGTTCATCTTTCTGTTATCTCTCACTG AATTCATTCTATTGTAGTGGCTAGAGTTGATTTGATAACAATTTATGACTTATGTATGAGCTCCTTTTTATTCTTTTCAT TTTTAATAAAAG
CDS sequence (LotjaGi1g1v0728600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGACCCACTTGGATTTCCTCAAGAAATTCAAGCGCTATAGCCCTCTAGACCCTTCTCTGAGTTTCTTCTTCGCTGCCCT TCTCTTCATTGCCTGCTTCTTCTACCTTGATTATGGTGGGTTTCGCTCTAGGGGCACCACTCTCCTCGCCGTGCACTTCT CCTCCTCCCCCGTGCCGTTCTCTTCATCTTCTTCATCTGTTCAGTTTCTGGGTCAAGATGGTGATGGGTGTGATGTGTTT GATGGGAACTGGGTTTGGGATGAGACTTACCCACTTTACCATTCTGCTAACTGTTCCTTCTTGGATCAAGGCTTTCGCTG CTCTGAGAATGGTAGGCCTGATGCCTTTTATACCAAGTGGCGATGGCAGCCCAAGGATTGCAACTTGCCAAGATTTGAAG CAAGGAATATGTTGGAAAAGCTACGGAACAAGCGGCTAGTTTTTGTTGGTGATTCAATTGGAAGGAATCAATGGGAATCA CTCCTTTGTATGCTCTCTTCTGCCATTAAAAACAAGAGTGCTGTCTACGAGGTTAATGGGAGCCCAATCACGAAACACAT GGGCGTCTTGGCGTTCAAGTTTGAAGATTTCAACTGCACCGTTGAATACTACAGGTCACCATTTCTAGTAGTACAAGGAC GGCCTCCACCTGGAGCACCTAAAGAGGTAAAAATGACTCTGAGAGTGGATCGCATGGACTGGATATCTCATCACTGGAGA GATGCAGATGTGTTGGTTCTCAATGCTGGACACTGGTGGAATTATGAGAAGACTCTGAAACTGGGCTGTTACTTCCAATT AGGGGTGGAAGTGAAGATGAATATGACTACAGAGGATGCGTTCAGAAAATCAGTTCAGACTGTAGTTGATTGGATTGCTA GTGAAGTAAACACAAACAAAACTTATGTCCTTTTCCGAACTTATGCTCCTGTGCACTTCAGGGGTGGTAATTGGAACACC GGTGGTGGTTGTAACTTGGAAACGCTACCTGATCTTGGCTCCATCCCTGAAGTCTCTGACATGCATTTCAGAACTGTCTT TGATGTCTTATCAGAGCACACGAGTAAATCTAGAGTTTTGAAGTTAGACTTGCTTAATGTCACCCAAATGTCGTCACGCA GGAAAGATGGCCATGCATCTATTTACTACCTTGGGCAAGACAAGGGCCCAGCCTCTATGCAGCGGCAAGATTGCAGCCAT TGGTGCCTCCCCGGTGTTCCCGATTCATGGAATGAGATTCTTTACGCACTTCTTCTTAAGCGGGAGGCCTTTCGCGAACG GACTACGGCTTTTCGCGAACGGAATACAACAAGAGTTTCTCAAGTTTCAGTATAA
Protein sequence (LotjaGi1g1v0728600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MTHLDFLKKFKRYSPLDPSLSFFFAALLFIACFFYLDYGGFRSRGTTLLAVHFSSSPVPFSSSSSSVQFLGQDGDGCDVF DGNWVWDETYPLYHSANCSFLDQGFRCSENGRPDAFYTKWRWQPKDCNLPRFEARNMLEKLRNKRLVFVGDSIGRNQWES LLCMLSSAIKNKSAVYEVNGSPITKHMGVLAFKFEDFNCTVEYYRSPFLVVQGRPPPGAPKEVKMTLRVDRMDWISHHWR DADVLVLNAGHWWNYEKTLKLGCYFQLGVEVKMNMTTEDAFRKSVQTVVDWIASEVNTNKTYVLFRTYAPVHFRGGNWNT GGGCNLETLPDLGSIPEVSDMHFRTVFDVLSEHTSKSRVLKLDLLNVTQMSSRRKDGHASIYYLGQDKGPASMQRQDCSH WCLPGVPDSWNEILYALLLKREAFRERTTAFRERNTTRVSQVSV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 19 | 19 | - | – | |
| PANTHER | 5 | 429 | 425 | 4.0E-208 | – | |
| PANTHER | 5 | 429 | 425 | 4.0E-208 | ||
| Phobius | 20 | 38 | 19 | - | – | |
| TMHMM | 20 | 39 | 20 | - | – | |
| Phobius | 39 | 444 | 406 | - | – | |
| Pfam | 76 | 128 | 53 | 2.1E-22 | ||
| Pfam | 129 | 416 | 288 | 1.4E-96 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0728600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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