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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0730000 |
| Transcript ID | LotjaGi1g1v0730000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | F-box protein interaction domain protein; TAIR: AT3G23880.1 F-box and associated interaction domains-containing protein; Swiss-Prot: sp|Q9LIR8|FBK67_ARATH F-box/kelch-repeat protein At3g23880; TrEMBL-Plants: tr|I3T5P8|I3T5P8_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0730000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:130173337..130176150) extracted from Lotus japonicus Gifu genome v1.2.
GAAAAATAGGGTTGACGCTTCTCATTCACTTTGTACATCGCTTGGCTTCTTCTCAGTGGAGGTGGTGGCTCTCTCTGAAC TCGATCGATCGATCGATCGTTCTCTCTTGCTTAAGGTAAATTTTCTCCTCCTCTTCTTTTACATCAATGATCTGCTCCTC GCTTATTAACATGATGGTGAACTCGATTCTGTTGAATTGGGTGTTTGTAGGTTATTTGATATATTGTGGGTTTTTTTCAC AATGTAAGTTGGTTTTCCACCCACAACAATGAAAAATTCTCGTGATGTTTCAATTCTCCCTCCAGAACTCTTGACGGAAA TCTTCTCATGGCTACCCGTGAAGACCCTCATGCGATTTGCGTGCGTTTCCAAGTCATGGAAATCACTTATCATTGACGAT TCATCATTCGTGAAACTGCACCTCAATAGATCTCCAAAAAACACACATATTCTCCTCAACATAGCAAACGACCCTTACGA CTTTGAAAATGATGACACTTGGGTTGTTCCATCCTCTGTGTGTTGCTTGATTGAGGATCTGTCCTCCATGATCGATGCTA AAGGGTGCTATCTTTTGAAGGACGGTCATTTGGTCATTGGCTCCAGCAATGGATTGATTTGTTTCGGCAACTTTTACGAT GTTGGCCCAATTGAAGAATTTTGGGTTCAACTTTGGAACCCGGCCACACATTTGAAGTCTAAGAAGTCACCAACATTTAA TCTGAGCATGCGAACTTCAGTGGATGCTCCGCCCGGTAAGGTGAATTTGGGGTTCGGCTATGATAATTTGCATGATACAT ACAAGGTGAGTAAAAATTTAAAGTCCTACCTACCCATTTGAAGATAATTATTTGAGAACTTGTAGCAATATATGATAGCT TAATTTGAAATTAACTTTTCTACCACCAATATTTTAAATTGTAGTTTTTATATTAATGGCTACATCGAGATCCTTCATAT TCTAAAAAAAATTGATGATATATATAACCATATAGATTATAATTACACTCATTATGACCATAAATGATCAAAGATTTTAG GTTCCTAAATAGTGTTCATGGTTGAATTTCATTGATGTGATAGAAAATGAGACATCATTTGGAAACATAAGATTGGCCAG AAAACCTTCACATTGTAGACAACAATTTAAAACTAAAATACCACTTTGATTAACTTACTCAAGCAATCTGATTTATTATC CTTTGCATCAAGTAGAATTTTACCAATTAAGTTAGTTTCCACTTCAAATTACCTTAAAGACTAAGTAGATCATGAAAATT ATAAGATTACATAATTTTCATTATACATCTAAGAACTATGATCCTTTTGGGTTAATTTTAATTTTTACTCTTTTCTAGGT GGTGCTAGTGCATTGGAATTGTACAAAGCAGAAAATGGAGACAATGGTTTATTGCGTGAATGATATTTTTTGTAGAAAGA TTTTGAGTGATCCTTGTTCCCCAATTTTGCTAAACCAAATCAAAGGACAATTTGTGGGTGGTTGTCTTAACTGGTTAGCA CTTAAAAATATGAATGATATCAAATATCAATGGGACAATGTTACTCTCGACCAACTGGTTATTGCTTCCTTTGACATGAG TAAGGAGGTGTATAGGTATCTGCCACTTCCTAAGGGTGTAACTGAGGTGCCTCGTTTTGAGCCAAGTCTTAAGGTTCTAG GGAATCACATGTACCTTTTCCATGACCATAACAGTATCCATTTATTTGTGTGGAAAATGGTAAAGTATGGAGCTCTAGAG TCTTGGACTCAGTTGTTGAGTATCAGTTATGAGCGTCTTCATTGTATTGGATTTCCGTATATCCCAGTGCCGATGTTCTT GTTAGAAGATGGTGACATTCTTATGATCGCAATAACAGAGAATTTGGAGTTTATAAAGTATAATATAAGAGATTATAGTA TGGAGTATATTCCAAATCCCAACGAAGTATTTTGGATGGATGCCTATGGTTATGTACCAAGTCTAGTTTCTCCTTGTCAA GACTAAGAAGATGGACAAGATTGAGAGAGAAAATGCACTCTTGGATGGCAATTGCAAAGATCACATAAATTCTCAGACAA TATTTGATTTGTACCTTATTAGCATAATGAAGTCTCTTAAATTTGGTGAATATTTTAAGTTATGTTGCAATGGTAGTGAA TATTATATTTGTCTAGGAAAAGATATTGTCATACTTAGAAATTCTAATATTTTAATACCTAGTTTTGAATTTATGCGTGG AATGAATTAGATAGTAATGTAGGTGTTGGGAGTGGAAATGAATGAGAAATTATTGCAAATAAGCTACTTCTAATTATTAA AAAAGTTGTTACTAGGAGCTAATGAACATACGTTTAGTTGCATGGATCCAACCTTAATAATAGAGGAACCTTTTCTAAAA CCTCTACCCAAACCTCCAGACCTAAATTTTCATATTGGGTATACTAATAAGTGAATAAATACTATGGTTTAGGTGTCAAA GATCCAAACAACTAGATTTCCATGTTTTAACTACTATGGTTTTGATTTTGTTTTTCAAATTCCTTTGTTAAGAAAGAGAT TCTGCAAAAGCCACTAGACTTATGGACTATCTTTGTTGTGCTACAATACTATAAGTTGTCACTTAATGGTAGACCTCCAC CAGACCAGGAGATAGAGGTTTTTTAGAGATCATTTAGAGGCTATAAGTCTCTTCTAATCCTTGTGGTGTTTTACTTTTCC TCCTCTTATATCTCACATTTCCATTTCATTTTAGTTGTTTGGGCTTCACATTGAGGACATCTTTGAGAACAATGTGTGAT TCAAGTGTGCGGAG
CDS sequence (LotjaGi1g1v0730000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAAAATTCTCGTGATGTTTCAATTCTCCCTCCAGAACTCTTGACGGAAATCTTCTCATGGCTACCCGTGAAGACCCT CATGCGATTTGCGTGCGTTTCCAAGTCATGGAAATCACTTATCATTGACGATTCATCATTCGTGAAACTGCACCTCAATA GATCTCCAAAAAACACACATATTCTCCTCAACATAGCAAACGACCCTTACGACTTTGAAAATGATGACACTTGGGTTGTT CCATCCTCTGTGTGTTGCTTGATTGAGGATCTGTCCTCCATGATCGATGCTAAAGGGTGCTATCTTTTGAAGGACGGTCA TTTGGTCATTGGCTCCAGCAATGGATTGATTTGTTTCGGCAACTTTTACGATGTTGGCCCAATTGAAGAATTTTGGGTTC AACTTTGGAACCCGGCCACACATTTGAAGTCTAAGAAGTCACCAACATTTAATCTGAGCATGCGAACTTCAGTGGATGCT CCGCCCGGTAAGGTGAATTTGGGGTTCGGCTATGATAATTTGCATGATACATACAAGGTGGTGCTAGTGCATTGGAATTG TACAAAGCAGAAAATGGAGACAATGGTTTATTGCGTGAATGATATTTTTTGTAGAAAGATTTTGAGTGATCCTTGTTCCC CAATTTTGCTAAACCAAATCAAAGGACAATTTGTGGGTGGTTGTCTTAACTGGTTAGCACTTAAAAATATGAATGATATC AAATATCAATGGGACAATGTTACTCTCGACCAACTGGTTATTGCTTCCTTTGACATGAGTAAGGAGGTGTATAGGTATCT GCCACTTCCTAAGGGTGTAACTGAGGTGCCTCGTTTTGAGCCAAGTCTTAAGGTTCTAGGGAATCACATGTACCTTTTCC ATGACCATAACAGTATCCATTTATTTGTGTGGAAAATGGTAAAGTATGGAGCTCTAGAGTCTTGGACTCAGTTGTTGAGT ATCAGTTATGAGCGTCTTCATTGTATTGGATTTCCGTATATCCCAGTGCCGATGTTCTTGTTAGAAGATGGTGACATTCT TATGATCGCAATAACAGAGAATTTGGAGTTTATAAAGTATAATATAAGAGATTATAGTATGGAGTATATTCCAAATCCCA ACGAAGTATTTTGGATGGATGCCTATGGTTATGTACCAAGTCTAGTTTCTCCTTGTCAAGACTAA
Protein sequence (LotjaGi1g1v0730000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKNSRDVSILPPELLTEIFSWLPVKTLMRFACVSKSWKSLIIDDSSFVKLHLNRSPKNTHILLNIANDPYDFENDDTWVV PSSVCCLIEDLSSMIDAKGCYLLKDGHLVIGSSNGLICFGNFYDVGPIEEFWVQLWNPATHLKSKKSPTFNLSMRTSVDA PPGKVNLGFGYDNLHDTYKVVLVHWNCTKQKMETMVYCVNDIFCRKILSDPCSPILLNQIKGQFVGGCLNWLALKNMNDI KYQWDNVTLDQLVIASFDMSKEVYRYLPLPKGVTEVPRFEPSLKVLGNHMYLFHDHNSIHLFVWKMVKYGALESWTQLLS ISYERLHCIGFPYIPVPMFLLEDGDILMIAITENLEFIKYNIRDYSMEYIPNPNEVFWMDAYGYVPSLVSPCQD
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 2 | 47 | 46 | 2.8E-11 | – | |
| ProSiteProfiles | 4 | 50 | 47 | 13.578 | ||
| SUPERFAMILY | 6 | 65 | 60 | 1.7E-14 | ||
| Pfam | 8 | 48 | 41 | 3.1E-10 | ||
| SMART | 10 | 50 | 41 | 2.1E-9 | ||
| PANTHER | 13 | 338 | 326 | 2.0E-40 | – | |
| PANTHER | 13 | 338 | 326 | 2.0E-40 | – | |
| TIGRFAM | 114 | 362 | 249 | 1.5E-12 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi1g1v0730000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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