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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0732600 |
| Transcript ID | LotjaGi1g1v0732600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein; TAIR: AT2G30780.1 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|O49343|PP177_ARATH Pentatricopeptide repeat-containing protein At2g30780; TrEMBL-Plants: tr|A0A1J7GYT9|A0A1J7GYT9_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0732600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:130421104..130424675) extracted from Lotus japonicus Gifu genome v1.2.
CTTCCCCGTTAAACCCTAACAAAAAAATTCACCATTGAGAATGAAGCGAGTATGGAGATTCTCTTCAAACGCAGCAGCGC GTGGAACCCGTTTCTCGTCAAAACCCAAACCCATTCCCTCCACCACCACCGCCACCACCACCACCACCACCACCACCGTG CTCTCTCATGGCCTCACCCGCCATTCCAGCACCCTGTCAACCGGACTCACAGGCATCGTCGCCTTGTTCACCGCAAAGTC CCCTCCGAACAAAGACGAACTCACCGTCAAAGTCGCGATTCTCAGGAACGAATTGGTTCGAGAAGCATCGGACTCTGCAA AGATTCTCCGCATCTTGAATGAAAACTCTGAATCTCTGAATCGCCCTCACCCTGCTGGATCCGTTTTGCTTGAGCTTCTC AATCAATTGGATTCATTGCCTTCCCTTGCCCTTCAGGTATTTCTATTTGCAATGCAGATTTCATAGAACTCTTCAATTGT ATATACCTAGATTTGTTAGCAATTTGTGAAATGGAAATTTACATTTGTTGTTTTTCGAAATTCAGGTGTTTAATTGGAAG AGATATAGAAAGAGAAATGATCCTGGAACCCCAATTGATGCATATGAGTACTCTAAGGGTATAAAGATTGCGGGTAAAGC GAGGAATGTTGAACTTGCTGTTCAGTTATTTAAGGAGGCTGCCAACAAGGGTATCAAGACGACCGGCACTTACAACGCGC TTATGGGTGCTTATATGTTCAATGGTCTGGCTGATAAGTGCCAGGAATTGTTTTTTGACATGAAGAAAGACGCTACTTGT GTGCCGTCGATTCCGACTTACAATATTCTTATATCTGTTTTTGGTCGATTAATGCTGGTTGATCACATGGAAGCGACGTT GCGGGAGGTGAATAGGTTGGGGCTTACGCTTAATGTGTCCACTTATAATAATTTGATTGCTGGTTATATCTCGGCTTGGA TGTGGGATGACATGGAAAGGGTTTATCAAACGCTGAAGTCGAGCGGTGTCGAGCCTAACTTGAAAACCCACCTGTTAATG ATCCGCGGGTATGCGAATTATAGTAATGTGGAGAAGATGGAAGAAATATATTCTTTGGTGAGGGATCATGTGAATAAAAA AGAAATTCACCTGATCAAGTCTATGATATGTGCCTATTGTAAAAGCTCTGCAGCAGATAGAGTTATGAAAGTAGAGGGCT TGTTAGAGTTAATTCCAGAAGATGATTACAGTCCTTGGTTAAACGTGTGGTTGATTAAGCTATATGCCCGGGAAGACATG TTACTTGAAATGGAGAATGCAATAAATGAAGCATTTGAACATAAAACCTCCGTAGTAACTGTGGGTATTATGAGATGCAT AATTGCAACTTATTTTCGGTGCAATGCTGTAGAAAAGCTAGATATTTTTGTGAGACGTGCTGAATCTGCTGGCTGGAAAA GCTGCCGCTCCTTATACCACTGTAAGTTGGCCATGCATGGGTTACTGAAGCAGTTTGAAGAAATGCAATATGTCCTTAGG GAGATGGATGACGTCAAACTTTATTCCACCAAGAAAACATTATGGATAATGTACAAAGCATACTTGAACTCTGGTCAGAG AGCCATGGTTTCAAAAATAGTAGGACAAATGTTCAAGCATGGTTATGAAGTTCCCTTGGATGCATTTCCATCATGAAATA TATTGCATGAAGTGTATATTGCTGCTCTCACTGATAGTAAACACATTCAGCAGATTAATGTGAAGATATTGTTTACACTT ACCTGAAATTGAACTTGTTTATTCTGGCAAAAGGACGTGCAGCTCATTGAAATGATTTATAATGCGAATACATTGATGGA AATTCTTTATATATAGTTGCACATGACCCTGATATTGGAAGTAATCTTGAACAAGTACAAAGGTCATCTTCAGTGGCTTG CCATCTTATATAGTCTATTTGTAGGTATGCATCTATTCTCATGGTTTTTATTTAGATGTTTTTATTCACATGGGTTACAT GTTCTATTTCATTCATGGCATTAATTATATTCTTGAACACATATTGCTTGCATTTGATTTTAGGCTTCTTGTTGCTGCCG GATTTCTTTAAATTCTAAATTTCACAATATATTATTAATTTCAATATTGCTTCTTTGATGGATTCTACAAGTACCATTTG CTGCCCACTACAGTGGAACTAACTTACCATTACTGATTTGTTGAAACCTAACCTAATTGTATAGGTTACACATTAATAAA TTGATATGCAAATCAAATTAGCCTTACTGATTTGAGAAGCTCTATATCCACAACTTTCAATAAGTAATAACAGTAACTTA TCTTGTTTCCTCCCTTTTTGCACTTTCATTGCCTGACTTTATGGTATGTGGCTAGACTGCTGAAAGTGTGTTTTTGATTT GCGAAAAACAAAAGGATTAGCAGTTGTCATGTTCGATTTTAGAAGTAGGCAAAGGAACTGACTATAAGTCTATAACAGAA GATCAAACACATGACCTATGATGCACCGACTCCGACACGGACACCGCGACCCGTCTTAAATCCAAAAAGTTGGCTCTCGC CTCCTTCTTGATCATCATCATTGGAAGAAAGCTTCGGTTCATCAAATTATAAAAATTACTAAACTAACAACTTGAAGAAT TTATATTTCACCAAGTGATCCAAGCTCTTTATTTTTTTATTCAAGAGTTTTGCAGGTACTCTTTTTAACTACACTTTGTC TGTATTCAACCTGATCACCTATTCTTCAAACGGTCAAACCATATCAGATGATTCTGTTGCTTTGCACTAGTTTTTCTCAT TGTATGCTGGCTTGGTTTACTAACAGCAATTATTGCAGATGATGTTGTACTAGTGCTGTCTTTGGGGAATGAAGGCACCC AGCATGCTGAGAGCTTCTAGTCCTTTCAGAATCTTGAATCAGTTCGGCTCTTCCACAGAAGCAGGAAGTAATATCTGCCT GCCACAGATATTAATGTTTATATTACAATTACACATAACAACTCTTGATTTTATGCAGAGGCTATGTACTGAAAGTCCCT ATTAAACCTTTGGAAGAGCACTGAAGGCAATATGGGAATTACGTTTAAAAGATGTATGAATTTGGAGAGCTTACTGTGCA CCAAACAATCAATTCTTTTAATAATTGGTCCCCTTCCTATTTGATATGAAATGAATTATTTCAATATTTTTTCAGTTAAA ATTTTGTCTGACAAAGATGTTATGTTCTTCTAGTTGTATTGGCAGTTTATACTTGTCATAAAGAATTAAAGTGAAAATAT ATGGATGTTAATCCAGAAGGGGGCTGAAGTTATTCTTAGAAATGCTCTAATTTGCATACGGATGATGGCTCACTGGATGT CAAGTCCCAAATTCTAGCCAAAATATGAATTTTACCTTGTGAAGTGAATCCAATCACTTCAGATGAACTAAATTCATAGT GAAGAGTTTTTTGTAATCTCCGCGACGATTGAAGGCCCGTAGTTTCAGTCAAATTTACTTGGGTTAATGTTTTATTGGAG TCAGTCATCTATTAGTTTTGTTAGGGTATTGAAATTCCAGTTTTAACTTGGG
CDS sequence (LotjaGi1g1v0732600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAGCGAGTATGGAGATTCTCTTCAAACGCAGCAGCGCGTGGAACCCGTTTCTCGTCAAAACCCAAACCCATTCCCTC CACCACCACCGCCACCACCACCACCACCACCACCACCGTGCTCTCTCATGGCCTCACCCGCCATTCCAGCACCCTGTCAA CCGGACTCACAGGCATCGTCGCCTTGTTCACCGCAAAGTCCCCTCCGAACAAAGACGAACTCACCGTCAAAGTCGCGATT CTCAGGAACGAATTGGTTCGAGAAGCATCGGACTCTGCAAAGATTCTCCGCATCTTGAATGAAAACTCTGAATCTCTGAA TCGCCCTCACCCTGCTGGATCCGTTTTGCTTGAGCTTCTCAATCAATTGGATTCATTGCCTTCCCTTGCCCTTCAGGTGT TTAATTGGAAGAGATATAGAAAGAGAAATGATCCTGGAACCCCAATTGATGCATATGAGTACTCTAAGGGTATAAAGATT GCGGGTAAAGCGAGGAATGTTGAACTTGCTGTTCAGTTATTTAAGGAGGCTGCCAACAAGGGTATCAAGACGACCGGCAC TTACAACGCGCTTATGGGTGCTTATATGTTCAATGGTCTGGCTGATAAGTGCCAGGAATTGTTTTTTGACATGAAGAAAG ACGCTACTTGTGTGCCGTCGATTCCGACTTACAATATTCTTATATCTGTTTTTGGTCGATTAATGCTGGTTGATCACATG GAAGCGACGTTGCGGGAGGTGAATAGGTTGGGGCTTACGCTTAATGTGTCCACTTATAATAATTTGATTGCTGGTTATAT CTCGGCTTGGATGTGGGATGACATGGAAAGGGTTTATCAAACGCTGAAGTCGAGCGGTGTCGAGCCTAACTTGAAAACCC ACCTGTTAATGATCCGCGGGTATGCGAATTATAGTAATGTGGAGAAGATGGAAGAAATATATTCTTTGGTGAGGGATCAT GTGAATAAAAAAGAAATTCACCTGATCAAGTCTATGATATGTGCCTATTGTAAAAGCTCTGCAGCAGATAGAGTTATGAA AGTAGAGGGCTTGTTAGAGTTAATTCCAGAAGATGATTACAGTCCTTGGTTAAACGTGTGGTTGATTAAGCTATATGCCC GGGAAGACATGTTACTTGAAATGGAGAATGCAATAAATGAAGCATTTGAACATAAAACCTCCGTAGTAACTGTGGGTATT ATGAGATGCATAATTGCAACTTATTTTCGGTGCAATGCTGTAGAAAAGCTAGATATTTTTGTGAGACGTGCTGAATCTGC TGGCTGGAAAAGCTGCCGCTCCTTATACCACTGTAAGTTGGCCATGCATGGGTTACTGAAGCAGTTTGAAGAAATGCAAT ATGTCCTTAGGGAGATGGATGACGTCAAACTTTATTCCACCAAGAAAACATTATGGATAATGTACAAAGCATACTTGAAC TCTGGTCAGAGAGCCATGGTTTCAAAAATAGTAGGACAAATGTTCAAGCATGGTTATGAAGTTCCCTTGGATGCATTTCC ATCATGA
Protein sequence (LotjaGi1g1v0732600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKRVWRFSSNAAARGTRFSSKPKPIPSTTTATTTTTTTTVLSHGLTRHSSTLSTGLTGIVALFTAKSPPNKDELTVKVAI LRNELVREASDSAKILRILNENSESLNRPHPAGSVLLELLNQLDSLPSLALQVFNWKRYRKRNDPGTPIDAYEYSKGIKI AGKARNVELAVQLFKEAANKGIKTTGTYNALMGAYMFNGLADKCQELFFDMKKDATCVPSIPTYNILISVFGRLMLVDHM EATLREVNRLGLTLNVSTYNNLIAGYISAWMWDDMERVYQTLKSSGVEPNLKTHLLMIRGYANYSNVEKMEEIYSLVRDH VNKKEIHLIKSMICAYCKSSAADRVMKVEGLLELIPEDDYSPWLNVWLIKLYAREDMLLEMENAINEAFEHKTSVVTVGI MRCIIATYFRCNAVEKLDIFVRRAESAGWKSCRSLYHCKLAMHGLLKQFEEMQYVLREMDDVKLYSTKKTLWIMYKAYLN SGQRAMVSKIVGQMFKHGYEVPLDAFPS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 507 | 507 | 6.0E-220 | – | |
| PANTHER | 1 | 507 | 507 | 6.0E-220 | – | |
| MobiDBLite | 7 | 34 | 28 | - | – | |
| MobiDBLite | 12 | 34 | 23 | - | – | |
| Gene3D | 78 | 213 | 136 | 8.7E-13 | ||
| ProSiteProfiles | 150 | 180 | 31 | 5.853 | ||
| ProSiteProfiles | 184 | 218 | 35 | 8.133 | ||
| Pfam | 184 | 231 | 48 | 7.4E-9 | ||
| Gene3D | 214 | 327 | 114 | 4.1E-20 | ||
| ProSiteProfiles | 220 | 254 | 35 | 7.717 | ||
| ProSiteProfiles | 255 | 289 | 35 | 11.213 | ||
| Pfam | 255 | 303 | 49 | 1.9E-9 | ||
| TIGRFAM | 258 | 290 | 33 | 7.6E-5 | ||
| ProSiteProfiles | 290 | 320 | 31 | 6.445 | ||
| ProSiteProfiles | 325 | 362 | 38 | 5.568 | ||
| Gene3D | 328 | 506 | 179 | 9.5E-6 | ||
| ProSiteProfiles | 467 | 501 | 35 | 6.029 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi1g1v0732600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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