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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0736000 |
| Transcript ID | LotjaGi1g1v0736000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family, putative; TAIR: AT5G06320.1 NDR1/HIN1-like 3; Swiss-Prot: sp|Q9FNH6|NHL3_ARATH NDR1/HIN1-like protein 3; TrEMBL-Plants: tr|K7MZB5|K7MZB5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0736000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:130997720..131001134) extracted from Lotus japonicus Gifu genome v1.2.
CCAGGAAATTAACATGAAAATATCTACCAAAAAAAAAAAGGAAATTAACATGAAAATGAAAGCATACAATAGTCAATGCC TGTGGAAGTTAGCAGGTTGGGAAGTTTCAAGGAAACAGCCTTGTGTAGACGGCAAACGGTGAAATTGTACACGGCTACAC GCGCCGCGCGCACAGTTAACAAGCAATCCAAAAGCAAGCGCGTTTTAAGAAGAAATCAGAAAAAATTGAACTACTCCCAC GACCCCACAAGCCGTAAAAACAACGCGCTTTTTCAACTTCACCTCTTCATTTCCTTCATCTATAAATCAAAATTCCCAAT TCCAATTATCACAACAAAACAAAGCCTCTTGCATTTCCATTAAATTTTTTAATTAAATTCACTCATAACTGAAACTCTGC CCGCTTTTCAATTCATCCACCATGTCAAACCTGAACGGAGCTTATTACGGCCCCGCCGTCCCTCCGCCCAAAAAAACCTA CCACCGCCCAAGCCGAGGCGGCGGCGGATGCTTCGAGTGCTGCTGCGGCTGCATCTTCAGCCTCATCTTCAAACTCATCT TCACCGCCCTCATCATCATCGGCATCGCCGTCCTCATCTTCTGGCTCATCGTCCGCCCCAACGTCGTGAAGTTCCACGTC ACCGACGCCACGCTCACGCAGTTCAACTTCACCGGAAACAACACGCTCAACTACGATCTCACCCTCAACATCACCGTCCG CAACCCAAACAAGCGCCTCGGGATCTACTACGACTACATCGAAGCGCGTGCGATGTACCAAGACGTTAGGTTTGATACCG AATTCTTCGATCGGTTCTACCAGGGACACAAGAAAACCAACGTGATCAGTCGCCAGTTTAAGGGTACGCATGTGGTGCCG CTCGGTGCTGAGGAGACGAAGGAGTTGAATAAGGATAAGGAAGATGGGGTTTATGGGATTGATGTGAAGATGTATCTGAA GGTGAGATTCAAATTGGGCGTTTTCAAGACCAAGACGCTTAAGCCCAAGGTTACTTGTGAGCTGCGCGTTCCTCTGAAAT CCGCCGGTGGCGGTGGTGGTGGTGGTGGCTTTGAAGTCACCAAGTGCGACTGGGATCGTTGATGGATTTAATGGCGCCGC CGTTATCATACCCGACCCGACCCGATTCTATATCATCTTTTGGTTTGACTTTGACTCTTGATGCGATATATTTGTTTATT GGTTAGAGTTTTTGGCCATTCAGGGATTTGAGTACACATTATATTATGATTATTATGCATTTCATTATAGTATCATCCTC TGAGGCTCTGACTCATTCCATTAGGTGGAGGGGATTTTTAAATTTTGGTATCTTACTACTTGTTATTTGTTCATAAATAA ATATATATGATTTTATTTCTTCTCTTTCGTAAACTTGTTTCCCAAGTTGCTTGTGATTGCCAAGTGAATTTATAGATTGT TTTGTTAGTTAGAAAGTAAGCATACTTTACTTGATATATTCAAAAAAATTAAAGTAAGTGGATTGATGGAGTGATTGAAT ATTAAGTTGATTGACGTAGTGATTGAGATCTTTATCTATTAAATAAATGGTTCAGACAATCAGGTGATTTCAACTCTTCA AAATAAGAAAATAATACTCTATTTATACAAATATCTATTGAAAGTAATGAAATTAAATTGTCTTTAACAATATAAGTTAA TGTACTTGGAAATTTTAAAAGAAATTGTCTTTAACAATATAAGTTAATGTACTTGGAAATTTTAAAAGACGCAAGCTACC CGGCCTATGCGAAGCCTTTATCTTGAGAATCTACCAACTTCAGCCTTTAAGAAAGCTGTAATGGATGACTTCAATAATCT CTTGCTATATGTTGGTGTACATCATATCCAACAAGCTCAACCGTGTATCAGCTGCACTGTGAGTTTGTAGCGCAAAATGT GAAAATTTAGTTTTACCCCTATGATGCAATGGGTTTGAGTTGTTTGTTTCCTTACAGCTGAGGATGCATCAATTGCTCTT TCTTTTGATGGCAGTGTACTGTGTGGCTCTGTTGTGAAAATTAGACGCCCTAAAAGTGGACAATGATAATACAAATTTAA TCAAGCTATAAGTTTAAAGTTGTCATGCATTTGACTGAAGAATGCATATGGAAATTAAAACAAGACAGTTACAAAATTTA TTTGTCTTTATAACTGTATAGTGGTTATAGAATTCAAGCACACCATCAAATAAAAAATTGGGTAACTAATAAATTTATTA GCCTTGATTGCCATGGTAAAACATTGAAAGAAAAGTGGTGAGTAAAATAATATTTATTAATTGGGGCTAGGAAATTTGTT ATGCTATAGAGCATTATGCAATTCAAGAGTAAGTTCTAAAGACCTTAAGAGCAGTTGAAGGTGAAATAATAGCAGCATCA AGTGTACAGATTATTTAAGGTCTCAGTCAGTCAAGGGCATTTATTCTAGGTAAGCTCCTCTCTACTATTATTGATCAAAT TCCCTTTGCAGGTAAGACATTGAGTTGAAGAAGTGAAAGAGGGGAGAGGGATGTGCCTTGGTGAAAAAGCAAGAGCTTGG AGCTGCTAAGAAGAAAATAGTAGAGAATCGTGAGATGATCTACAATAGGACTAAGCAGTGCATGAAGGAGTGCAATGAGA AAGAAAGGGAAATGATTCAATTGAAAGGCTGATTTTATGTTGATCCTAATGATAAGTTGTCTCTTATTTATTATTGGAGG ATTTTGCAGCTATTGCGTTTGAGACAGATTTTTAATGTTTTTTTTATTGAAGTTAACAAACCAACAATGAAAATGCTGCA TAATGCATAGTTGAGCCCAAATATGAAGAGTTTAGGTATGGAAAGTTGAACCAACAGAGAAGATATGGAAAGTTGAACAA GCAAATAATTGCTCTGGCTGATAACTCTGTTATTGAGGGGGCTCTGGGTAAGTATGGCATTATGAGACCTTATCCATGAG ATCATGATTGGTGGACTTCATTTTAAGGAGGCAAACAACCTTCCTTCGACCATTTTAGCTTAAGGCTCCTTTGGGGCACT TGAAGAAGAAAAGGAACCACTATGTTGAAGGGGGTGATGTCGAAATCAGAGAGAATGAATTAAACTGTAGTAATTAATTA GGGCTAATAAATCTTTAAAAGGCTTTAGAATAAGATTAAACAATTTTGTATTTGAAATTTTGGAAATAGCACTTTTTTGG CTTTCAAAAATCATTTTGCTAAGACTGAATTTGTTTTTCATATTTTAAGTGTACGTGATGAGTTTCATATGTTATTATAT GTCTATGAACATTAATAATATAAACATGAAAACTACTGGCTAAAATTTATTTATAAATGGTCAAAATTCAATGATTAATG ACAAATAATCATAAAATTAGAACAAAAAACTATGATGAATGTGTTGTATAAGGAA
CDS sequence (LotjaGi1g1v0736000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCAAACCTGAACGGAGCTTATTACGGCCCCGCCGTCCCTCCGCCCAAAAAAACCTACCACCGCCCAAGCCGAGGCGG CGGCGGATGCTTCGAGTGCTGCTGCGGCTGCATCTTCAGCCTCATCTTCAAACTCATCTTCACCGCCCTCATCATCATCG GCATCGCCGTCCTCATCTTCTGGCTCATCGTCCGCCCCAACGTCGTGAAGTTCCACGTCACCGACGCCACGCTCACGCAG TTCAACTTCACCGGAAACAACACGCTCAACTACGATCTCACCCTCAACATCACCGTCCGCAACCCAAACAAGCGCCTCGG GATCTACTACGACTACATCGAAGCGCGTGCGATGTACCAAGACGTTAGGTTTGATACCGAATTCTTCGATCGGTTCTACC AGGGACACAAGAAAACCAACGTGATCAGTCGCCAGTTTAAGGGTACGCATGTGGTGCCGCTCGGTGCTGAGGAGACGAAG GAGTTGAATAAGGATAAGGAAGATGGGGTTTATGGGATTGATGTGAAGATGTATCTGAAGGTGAGATTCAAATTGGGCGT TTTCAAGACCAAGACGCTTAAGCCCAAGGTTACTTGTGAGCTGCGCGTTCCTCTGAAATCCGCCGGTGGCGGTGGTGGTG GTGGTGGCTTTGAAGTCACCAAGTGCGACTGGGATCGTTGA
Protein sequence (LotjaGi1g1v0736000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSNLNGAYYGPAVPPPKKTYHRPSRGGGGCFECCCGCIFSLIFKLIFTALIIIGIAVLIFWLIVRPNVVKFHVTDATLTQ FNFTGNNTLNYDLTLNITVRNPNKRLGIYYDYIEARAMYQDVRFDTEFFDRFYQGHKKTNVISRQFKGTHVVPLGAEETK ELNKDKEDGVYGIDVKMYLKVRFKLGVFKTKTLKPKVTCELRVPLKSAGGGGGGGGFEVTKCDWDR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 40 | 40 | - | – | |
| PANTHER | 3 | 224 | 222 | 1.2E-78 | – | |
| PANTHER | 3 | 224 | 222 | 1.2E-78 | – | |
| TMHMM | 41 | 63 | 23 | - | – | |
| Phobius | 41 | 64 | 24 | - | – | |
| Phobius | 65 | 226 | 162 | - | – | |
| Pfam | 96 | 199 | 104 | 8.7E-13 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0736000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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