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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0736200 |
| Transcript ID | LotjaGi1g1v0736200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family; TAIR: AT3G11660.1 NDR1/HIN1-like 1; Swiss-Prot: sp|Q9SRN0|NHL1_ARATH NDR1/HIN1-like protein 1; TrEMBL-Plants: tr|I3SYL3|I3SYL3_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0736200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:131023323..131025983) extracted from Lotus japonicus Gifu genome v1.2.
AAAATGTAGAAAGAAATAGAAAAAAAATATCAAAATCAGATGAGAACAAAATGAAGTGCCAATAAATCTTTACTAGGACC TCCAAAGTGATAAGCGATAAATTATTTCTCACTTTTGTGTCCACCATTTTTTCTCACTAAAATTGTCCACCATTTCTCAC TTCTATCATATACTCAACTTCACTCCCAAACTCTGAATTCCTACTCCTCCAAAACCAGCTTTTCTATACTCTCTTTTTCT TTCTCTCACTCCCTCTCTAGTGCATTGAAAGAAACTTCTACCGCCACTAGCTCCACCGTGCAGGATGTCGGTGAAGACGT GCGACCACCACAAGGGGAAGAAGAAGAAAATCTTCCGGCGAATCTTCTGGGGCATCGTGATCTTCCTCTTCATCGTCCTC GTAACAATCCTAATCATCTGGGCAATCCTGAAGCCCAATAAACCCACCTTCACACTCCAAGACGTAACCGTCTACGCCTT CAACGCCACAATGGCCAACTTCCTCACCTCCAACTTCCAAGTCACGCTCTCCGCCCGCAACCCCAACGACAAGATCGGCG TCTACTACGACCGCCTTGACGCCTACATCACCTACCAGAGCCAGCAAGTCACCTACCGCACCGCCATCCCTCCGTCGTAC CAGGGCCACAAGGAGATGGACGTTTGGTCCCCGTTTGTATACGGCACCAACGTCCCGGTGGCTCCCTACAATTTTGTTAC TCTAAGCCAGGACCAGGCCAACGGTAACGTCCTCGTCACCGTTAAAGTTGACGGCAAGGTTCGATGGAAGGTCGGCGCTT TTGTCACCGGCCACTACCACCTCAACGTCCGGTGCCCTGCTTTTATTACCTTCGGCGCCAGAAGCAACGGCGTCGCCGTT GGTGATAGCGGCGCCGTTAAGTATCAGCTCGTCCAGCGCTGCTCCGTCAGCGTCTGATTGATTAGTTGGTTGAACTTCCG TCAACGCCGTTAAGTTTTCTATCACTTGGAACTTCCCCTGTTTTGCTCTGTTCTGCTCTGTTCCTTGGTATTAGTATTTA CATACGGTCTTAATTTCTATTCTACGTATTTCTTCTGTATTGATTTGTCTTTAGCTATTATGTACGTAAATTTATTGGGG TATTTTGGAATTGTACATTTTAATTACTACTATAGAATAAAATTGCACTTGGAGGAATTCATATTGGAATTTGATGAAGG AGAAAGACATGTACTATAGCGAAATTACACTTTGTAACACGGCTATTTGATTAAGATGAAATAAATTAGAACCTATTTCA TAAGTTTGTGTCAAATTGGATGAAAATCAGTTTGTGATGAATTGGCTTTTGCTTTCTTCTAATTCTCTCGAGAATACTCA TGAATTATTCGAGTTTTATTTGGCTTGAATTTTTATTAGGAGATACAGGAACTCATGAGTCATGGAAACAATACATTAAG ATAACCATGGTGCATTTTTTATTCTCTTTTCTTGGTTATGATGTGTATTTCCTTGTCTATATTCTCCTGGGCTTGTATTA TTATAGAATCAATAATGAAGAGTAAATTATTTGTAAAAATGTAGTAATGAATTTCCTAATGTAAACTAATTAGGACATGC GCACTTAGAAGTTAAGGTCAATGATTGGAGGATTTGTTTACATTGGTTTCACATGGAATGACATGGTATAGTGGTGGTTC TTTTCATCACCCTTACCTACCTTGCCAATTTATTAATAATGGTGTGAAAAAAAGGGTTTGGTTATGTCATGGCTAGAAAT GGATGGTTTTCATGTTGATTTATGCAGACAATCAAACCAGAGGTTGGACAACTCAACAGAACACATGCATGCTTAACTAG CATTAGGTAGTTTGAAGGCATGTGGTAGATCTGCACCGTCAGGGGAAGCTTCTTAATTTGATTCGTCAACACTCAAAAAC GGCCACCATGTGCATGTTACTTTGATTACGACTCATGACGACGCTCCACTCGATTCTCAATTTCTCATCAAGCAATATTC ATTCTGAATTTAGGCCTCTCCTCCATACATAGGAACGTTACCCATGTATTATTGTATTTCCCTTGCTTCTAACATACGTA ATTATCAATCACATGTTCTCCCTGTGTTTGGTAGACCATATGCATAAGATAAATGTTTGGTACACCCCATTAAGGGTGTT TAGACACCTAGGGAGAGAAAGCAACATAATAGAGAGAATAAAATAAATGTGATATATAATGTGATATGATTAAAAATAAC ATAATACATATTTAGATTGAGTGTTTCAATTCATAACCTCATCTTGCTTGCTAGTATACTCCAAAATTGTTCATTTTGTT TTGATAGAGAGAAAGTAGCGTCACATAACTTTGCTAGTACGCTTCATGGAAACGAACTATGATAATCGTGGCTTGCATTT TGAAACTTTAGAGGAAATAATGCAAAGGTGGAACTATGAGGAAACAAAATTAAACCAGCAAGGGGACGTGGCAAGAGGTG GCTAGAGACTGTCATGTGGTGGTCGGATGAACACCATGGATCTCCGTGGTGAGACCCGACAATGAAGTGGCAGCAAGGCG AAGACTAACACAATGGAACCAACAAAGGCTAAAGCAACAGAGTGTGGGAGGAGAGGGTGGAGATGAATAGGGGAAACCTA GATTAAAAACAAAAAACGCTT
CDS sequence (LotjaGi1g1v0736200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCGGTGAAGACGTGCGACCACCACAAGGGGAAGAAGAAGAAAATCTTCCGGCGAATCTTCTGGGGCATCGTGATCTT CCTCTTCATCGTCCTCGTAACAATCCTAATCATCTGGGCAATCCTGAAGCCCAATAAACCCACCTTCACACTCCAAGACG TAACCGTCTACGCCTTCAACGCCACAATGGCCAACTTCCTCACCTCCAACTTCCAAGTCACGCTCTCCGCCCGCAACCCC AACGACAAGATCGGCGTCTACTACGACCGCCTTGACGCCTACATCACCTACCAGAGCCAGCAAGTCACCTACCGCACCGC CATCCCTCCGTCGTACCAGGGCCACAAGGAGATGGACGTTTGGTCCCCGTTTGTATACGGCACCAACGTCCCGGTGGCTC CCTACAATTTTGTTACTCTAAGCCAGGACCAGGCCAACGGTAACGTCCTCGTCACCGTTAAAGTTGACGGCAAGGTTCGA TGGAAGGTCGGCGCTTTTGTCACCGGCCACTACCACCTCAACGTCCGGTGCCCTGCTTTTATTACCTTCGGCGCCAGAAG CAACGGCGTCGCCGTTGGTGATAGCGGCGCCGTTAAGTATCAGCTCGTCCAGCGCTGCTCCGTCAGCGTCTGA
Protein sequence (LotjaGi1g1v0736200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSVKTCDHHKGKKKKIFRRIFWGIVIFLFIVLVTILIIWAILKPNKPTFTLQDVTVYAFNATMANFLTSNFQVTLSARNP NDKIGVYYDRLDAYITYQSQQVTYRTAIPPSYQGHKEMDVWSPFVYGTNVPVAPYNFVTLSQDQANGNVLVTVKVDGKVR WKVGAFVTGHYHLNVRCPAFITFGARSNGVAVGDSGAVKYQLVQRCSVSV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 19 | 19 | - | – | |
| PANTHER | 1 | 210 | 210 | 1.4E-118 | – | |
| PANTHER | 1 | 210 | 210 | 1.4E-118 | – | |
| TMHMM | 20 | 42 | 23 | - | – | |
| Phobius | 20 | 42 | 23 | - | – | |
| Phobius | 43 | 210 | 168 | - | – | |
| Pfam | 74 | 177 | 104 | 4.5E-12 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0736200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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