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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0737100 |
| Transcript ID | LotjaGi1g1v0737100.2 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | High mobility group B-like protein; TAIR: AT1G76110.1 HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain-containing protein; Swiss-Prot: sp|Q9SGS2|HMGB9_ARATH High mobility group B protein 9; TrEMBL-Plants: tr|A0A0B2NSU7|A0A0B2NSU7_GLYSO High mobility group B protein 9; Found in the gene: LotjaGi1g1v0737100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:131114836..131118039) extracted from Lotus japonicus Gifu genome v1.2.
CTAAAACACACAATCGATTCCACACATTTTCCAGCAAGAAAATTGAAATAGGTTTGTATGATCGTGTTTGAGGTTAAGGG CTTAGTTTAGTTTAGGTGCCCTCTCAAACATGCAAAGCGTGGAGAAGAGGACGGTGCTTCCATCAGATAAAACCCATGAC TCAGAGTGCTTCTACAAGAATCTCACTGCGTTGTTGGAGTCTTCTGGACTGAGTTTAATGTGAGTTTCCAGTCCACTACA CAAAACGTGCTTCCCATTTCTCTGTTTTGCCCTTAGTTTGAAGATGGGAGGGTCTTTATTGACATTTTCTTTATACTGCT CTGTTTGGTTCCTAGTAAATTGCTTGCAAAGAAAGTTTTCTCCTTTTTGTGTTGGCGCTTCCGGTTTAGCTAATGGTTTT CCTTACTCTAAGTGAGATGCATTGCCTTGTGTTGCTAGCAAATCATTTGTTGAGAAGTCCAAATTGACTAATTCACTCGA GAAATGGCTAAGATAATCTTTATAAATGGTAGAACAACCCTTACCTTGAAGTTATCTTCTAGGATAGAGTTAAACCTAAC CCAAATTCTAAGATGGTATTAGAGCATGTACTAGATTGTTTATTGGAGGCTATTTATATATGTAGTGGCGGAGGCAGACT CCGGAAGAGGGTGGTGCTAAGCCTAAAGAGGGTGGTGCGGTACATGTATAATTTTGGTATTGGTAAAGAAAAGTATCATT TTGGGGGTCACTATGGCATGACCTAGTCCCCATGGTTCCGCACTGTATATATGGGTCATCCGCAGAGATGCATATCTCTG CTGACAGATGTTCATACCTGCAAATTTCAAGCTCCACATATAAGTATGACTAAGACAGGCCTCCTAAAGGGTAGAACAAT TCTCATCTCTAAGCTAACTTTGGGAGTAGAGTTAGGTCTAACTCAAATTCTAATAGCATTCGTATGATGGAATAATGTGT GTTCTTATGTGTTCCTCTTTTCTCTTTGCTATGCAAAAACAGAATGAGTTAAAATTCAATATGAAATATTTAATACACAC ACACACACACACATATATATATGAACTAATTCACAAGAAAGATGTGATTCATAAAATGGATTATATGAATAATGTTGTAT TCCAATTGTACTTGGCAGTTTGAATGACTTGTACCTGTTTTACTTGGAGGTGACCAAAAGAGGAGGATATCATCAGGTAT ATTATGTGCATATCAAGTTTGTTCATCCAATTTATTCAAGAGTCTATAATCTATATTCATGGTAAATTTAATTTTTGATT TTTTGTATTTTTGTATATCATTAGATAAGTTTGTCCCCTCACTTAGTGATATAAGACTTTTGTTGTTGTTGTTGTTGTCA GATATCTATCTGGGATGTTCAAATTTAGGATCATTACTATGGATTTTCTTAAATGTTTTCAGGTTGACCAAGAAAAGAAA TGGGGTGAAGTGGTCTCTGCACTAAAATTAGAAGGAAGTAATGCAAAGTTATCTGCTCAAGTTGAAATGCTCTATGCAAA TCTTCTTTACGAATTCGAGCAATTGTACTTCTACAGGTGTCCTACAAAGCAAGCCAGCACCAAAGGTTAATCTAAGAGCT AGTCCAATTTGAAGCTATTTTATTAACTAAATATATTGATTCAGTATGGTGATTAATTTCACACATTTTTTATGTAGTTT CTTTGTAGTTTCTACATAGATGATTATAATCAATCTTTACTGCTTGGACATAAGAGAAGACCTTTCAGTATCTTTATTGT ATGAGATTGTTGGTGCATTTTGGTTTTATGATGACTTTTAACCTGACCTGAATGAGTCCTTCTGTTTTATCCACAACCTC ACCTTTTCCCAAAGGTCCACTTAAGAGGAAGCGGAATTTAACTCAATTAATGGATAAGGAAAATGTTCAGAGGGTGACAA TGTGCAAGGACTACTCTTCCCAGAAGACAGGTTTGGCTGCATATGTGTACTTATCTGCATACTTTTCAAATCCTAGGTAG GAGAATAGATGATTTTTTTTTTGGTAACTAGGGGAATTTTACATGACCAATTTTTAAACTCATCCCAATATATTACTTAG TTACGAGTAAATTAATTGTCAGTACTCTCGGAGTACTCAAGATTCAGTACATCCCTCACAATCTGAGAGAGTCATCCTCA TTTTTAAATTTTAGAAAAAAATCAAAATCAGGATAAACTAACAATAAAAGTCAGATGATATGCTTTAAGACGATGGAGTA TGTACTACAGGAGTACTGATTATGAATTTGAGGTAATTATGAATTACATTGGTTTGCAACTTACAGCTGAGGGTGGATAT GTAGAGCCAGTGCTTCAACCGGCACCTTCAAATGACAAAGGAAGGAAGAAACGCGGAGGTGCTCCAACAGGACGAAGGAC TGCATATCAGATATTCGTCAAGCAGGAATGTGCTCGATTGAGAGCTTGTAGTGAGGACTCCTTAGATCGCACGAGATTCC TACGCATGGCTATTGACACATGGAAGAACATGTCTGAGATTGAGAAACAGGTAAATTGAAATAATGAAATTGACATCATA TCTGATATTCTTAAAACATTTATCCCTTTTTTTTGCCTTTTAACACCCTTATGTGTTTGCTTGAAATTCTCCACTTCTGA TTACTTTTCACGTAGCCATATATGGAGGAAAGCAAGAAGAACAAGGAAAAACACAAGGAGGAGGAAAACAATAAACAGAA GAACGCACAAGATATGAAGCAAGTAAACAAGCCAACTAGTCAGTGTGGTGATTATTCTGTACCTTCACAGCCTGAGACAG ATAACTCAATTGTGAGTGCAGAACTTGGCTTAGCTCTTAAAATGACTTGGGAAGTAATGACTGGAAAAGCACCCGAGGAG TCCTTACAGGAATGGGATACTTATTTTTCAGAACTAGATTTACCAACTGGTGAATCCAAGTAATTCTACTTACTCTAGTT AATGGTGGGTTGGTCTTTTTGCTCTTTTGAGGCAATGACTATGTATGCATCCAGCAGTTTTCCCTTCTTTTTTTTGACTC AAACCAAGCTAGCTGCTATGTATATATTGTTTTGAAACAGCACAACAGGGTTGGAATGGCTGGATAGCATATGCTTCCGC CTCTTTCAGTAGTAGTGAAGTATGTAAATATTAAACGGTAGTGTAATGCAAACTTTTGTTGGAATTTATTTTTTCTTCCT GTGG
CDS sequence (LotjaGi1g1v0737100.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCAAAGCGTGGAGAAGAGGACGGTGCTTCCATCAGATAAAACCCATGACTCAGAGTGCTTCTACAAGAATCTCACTGC GTTGTTGGAGTCTTCTGGACTGAGTTTAATTTTGAATGACTTGTACCTGTTTTACTTGGAGGTGACCAAAAGAGGAGGAT ATCATCAGGTTGACCAAGAAAAGAAATGGGGTGAAGTGGTCTCTGCACTAAAATTAGAAGGAAGTAATGCAAAGTTATCT GCTCAAGTTGAAATGCTCTATGCAAATCTTCTTTACGAATTCGAGCAATTGTACTTCTACAGGTGTCCTACAAAGCAAGC CAGCACCAAAGGTTAA
Protein sequence (LotjaGi1g1v0737100.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MQSVEKRTVLPSDKTHDSECFYKNLTALLESSGLSLILNDLYLFYLEVTKRGGYHQVDQEKKWGEVVSALKLEGSNAKLS AQVEMLYANLLYEFEQLYFYRCPTKQASTKG
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| ProSiteProfiles | 1 | 99 | 99 | 12.905 | ||
| Gene3D | 4 | 110 | 107 | 1.8E-13 | ||
| SMART | 12 | 95 | 84 | 2.5E-8 | – | |
| SUPERFAMILY | 12 | 100 | 89 | 3.66E-17 | ||
| PANTHER | 15 | 105 | 91 | 4.3E-42 | – | |
| PANTHER | 15 | 105 | 91 | 4.3E-42 | – | |
| SMART | 16 | 100 | 85 | 2.0E-4 | ||
| CDD | 21 | 95 | 75 | 1.5663E-15 | – | |
| Pfam | 21 | 95 | 75 | 5.0E-11 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). |
Expression pattern of LotjaGi1g1v0737100.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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