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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0737100 |
| Transcript ID | LotjaGi1g1v0737100.4 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | High mobility group B-like protein; TAIR: AT1G55650.1 HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain-containing protein; Swiss-Prot: sp|B3DLD3|SOX18_XENTR Transcription factor Sox-18; TrEMBL-Plants: tr|A0A0B2QUC4|A0A0B2QUC4_GLYSO High mobility group B protein 10; Found in the gene: LotjaGi1g1v0737100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:131116100..131118039) extracted from Lotus japonicus Gifu genome v1.2.
AATTTAATTTTTGATTTTTTGTATTTTTGTATATCATTAGATAAGTTTGTCCCCTCACTTAGTGATATAAGACTTTTGTT GTTGTTGTTGTTGTCAGATATCTATCTGGGATGTTCAAATTTAGGATCATTACTATGGATTTTCTTAAATGTTTTCAGGT TGACCAAGAAAAGAAATGGGGTGAAGTGGTCTCTGCACTAAAATTAGAAGGAAGTAATGCAAAGTTATCTGCTCAAGTTG AAATGCTCTATGCAAATCTTCTTTACGAATTCGAGCAATTGTACTTCTACAGGTGTCCTACAAAGCAAGCCAGCACCAAA GGTTAATCTAAGAGCTAGTCCAATTTGAAGCTATTTTATTAACTAAATATATTGATTCAGTATGGTGATTAATTTCACAC ATTTTTTATGTAGTTTCTTTGTAGTTTCTACATAGATGATTATAATCAATCTTTACTGCTTGGACATAAGAGAAGACCTT TCAGTATCTTTATTGTATGAGATTGTTGGTGCATTTTGGTTTTATGATGACTTTTAACCTGACCTGAATGAGTCCTTCTG TTTTATCCACAACCTCACCTTTTCCCAAAGGTCCACTTAAGAGGAAGCGGAATTTAACTCAATTAATGGATAAGGAAAAT GTTCAGAGGGTGACAATGTGCAAGGACTACTCTTCCCAGAAGACAGGTTTGGCTGCATATGTGTACTTATCTGCATACTT TTCAAATCCTAGGTAGGAGAATAGATGATTTTTTTTTTGGTAACTAGGGGAATTTTACATGACCAATTTTTAAACTCATC CCAATATATTACTTAGTTACGAGTAAATTAATTGTCAGTACTCTCGGAGTACTCAAGATTCAGTACATCCCTCACAATCT GAGAGAGTCATCCTCATTTTTAAATTTTAGAAAAAAATCAAAATCAGGATAAACTAACAATAAAAGTCAGATGATATGCT TTAAGACGATGGAGTATGTACTACAGGAGTACTGATTATGAATTTGAGGTAATTATGAATTACATTGGTTTGCAACTTAC AGCTGAGGGTGGATATGTAGAGCCAGTGCTTCAACCGGCACCTTCAAATGACAAAGGAAGGAAGAAACGCGGAGGTGCTC CAACAGGACGAAGGACTGCATATCAGATATTCGTCAAGCAGGAATGTGCTCGATTGAGAGCTTGTAGTGAGGACTCCTTA GATCGCACGAGATTCCTACGCATGGCTATTGACACATGGAAGAACATGTCTGAGATTGAGAAACAGGTAAATTGAAATAA TGAAATTGACATCATATCTGATATTCTTAAAACATTTATCCCTTTTTTTTGCCTTTTAACACCCTTATGTGTTTGCTTGA AATTCTCCACTTCTGATTACTTTTCACGTAGCCATATATGGAGGAAAGCAAGAAGAACAAGGAAAAACACAAGGAGGAGG AAAACAATAAACAGAAGAACGCACAAGATATGAAGCAAGTAAACAAGCCAACTAGTCAGTGTGGTGATTATTCTGTACCT TCACAGCCTGAGACAGATAACTCAATTGTGAGTGCAGAACTTGGCTTAGCTCTTAAAATGACTTGGGAAGTAATGACTGG AAAAGCACCCGAGGAGTCCTTACAGGAATGGGATACTTATTTTTCAGAACTAGATTTACCAACTGGTGAATCCAAGTAAT TCTACTTACTCTAGTTAATGGTGGGTTGGTCTTTTTGCTCTTTTGAGGCAATGACTATGTATGCATCCAGCAGTTTTCCC TTCTTTTTTTTGACTCAAACCAAGCTAGCTGCTATGTATATATTGTTTTGAAACAGCACAACAGGGTTGGAATGGCTGGA TAGCATATGCTTCCGCCTCTTTCAGTAGTAGTGAAGTATGTAAATATTAAACGGTAGTGTAATGCAAACTTTTGTTGGAA TTTATTTTTTCTTCCTGTGG
CDS sequence (LotjaGi1g1v0737100.4) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTACTACAGGAGTACTGATTATGAATTTGAGGTAATTATGAATTACATTGGTTTGCAACTTACAGCTGAGGGTGGATA TGTAGAGCCAGTGCTTCAACCGGCACCTTCAAATGACAAAGGAAGGAAGAAACGCGGAGGTGCTCCAACAGGACGAAGGA CTGCATATCAGATATTCGTCAAGCAGGAATGTGCTCGATTGAGAGCTTGTAGTGAGGACTCCTTAGATCGCACGAGATTC CTACGCATGGCTATTGACACATGGAAGAACATGTCTGAGATTGAGAAACAGCCATATATGGAGGAAAGCAAGAAGAACAA GGAAAAACACAAGGAGGAGGAAAACAATAAACAGAAGAACGCACAAGATATGAAGCAAGTAAACAAGCCAACTAGTCAGT GTGGTGATTATTCTGTACCTTCACAGCCTGAGACAGATAACTCAATTGTGAGTGCAGAACTTGGCTTAGCTCTTAAAATG ACTTGGGAAGTAATGACTGGAAAAGCACCCGAGGAGTCCTTACAGGAATGGGATACTTATTTTTCAGAACTAGATTTACC AACTGGTGAATCCAAGTAA
Protein sequence (LotjaGi1g1v0737100.4) extracted from Lotus japonicus Gifu v1.2 Proteins.
MYYRSTDYEFEVIMNYIGLQLTAEGGYVEPVLQPAPSNDKGRKKRGGAPTGRRTAYQIFVKQECARLRACSEDSLDRTRF LRMAIDTWKNMSEIEKQPYMEESKKNKEKHKEEENNKQKNAQDMKQVNKPTSQCGDYSVPSQPETDNSIVSAELGLALKM TWEVMTGKAPEESLQEWDTYFSELDLPTGESK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 19 | 148 | 130 | 7.2E-36 | – | |
| PANTHER | 19 | 148 | 130 | 7.2E-36 | – | |
| MobiDBLite | 32 | 52 | 21 | - | – | |
| SUPERFAMILY | 33 | 113 | 81 | 7.99E-13 | ||
| Gene3D | 36 | 117 | 82 | 9.9E-12 | ||
| ProSiteProfiles | 49 | 118 | 70 | 10.802 | ||
| Pfam | 49 | 115 | 67 | 3.6E-7 | ||
| MobiDBLite | 96 | 120 | 25 | - | – | |
| MobiDBLite | 96 | 146 | 51 | - | – | |
| Coils | 100 | 127 | 28 | - | – | |
| MobiDBLite | 121 | 146 | 26 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0737100.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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