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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0738200 |
| Transcript ID | LotjaGi1g1v0738200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Nuclear transcription factor Y subunit; TAIR: AT5G06510.1 nuclear factor Y, subunit A10; Swiss-Prot: sp|Q8LFU0|NFYAA_ARATH Nuclear transcription factor Y subunit A-10; TrEMBL-Plants: tr|B3IX28|B3IX28_LOTJA Transcription factor CCAAT; Found in the gene: LotjaGi1g1v0738200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:131260959..131265119) extracted from Lotus japonicus Gifu genome v1.2.
ACATTACAGCTACAGGGAATTTTTTTGTTAGATAGGACGGCAAAGAATTTAATTTTGATGTATAATAATAATCCAAGTTA GAAATAATATAAAGTAATGAACTAGGCACATAGTACTAAGATGGTGGAGGGTCCTGGTTAAGCATGAAAACCAAACCCCA TTGGTGTATTATTTTTGTATGCATTTAATTAATCTCTCTTCTTTCCCAGTTCCACTTTCTCTCACCTTGAGTGTGTGCTT CATATTATACCGACATGGCTCCAATCTAATGGGGTTTTCTCTGCTTAAGGATTCTTGCTGTTTCTTCTTCTGCTTGTCAG TGCACTTTCTTTCTATGTTTCTTCTTCTTCTTCTTGGAGTTTAACTCACTCTATTGAGCTTGACTTTCTGGTTATTTTTG GGGGAGTATATATTTATTTTTCATTAATGCTTTCTCTGTTTTGGTTTTGTTTATGTATCTGGGTTTTGTATTTGGTATGT ATGGTTCATTGTTTGTACTTTTCTGTTGGGATTGTTGTTGGACTGTGTCTTTCTTGATTGTAATTCCCACCTTACTTTTG TCTTCTTTCTACTTATGTCCACTCCTATGTCCCCCATGTTCAATTTTTTTAAGTTTCTATTGCTTAGGCTTTCTTGTGTG GTATTGATTTTTTTATATTATTATAGTTATTGATAAGGTGTGGAAATTGAAATTCTGTTTTGTGTATTTTTCAATCCAGC TCCTTTTTTCTGACGTTTATGCTGAAGACTGGATAAAAATCCCAGGTAGAACATACTGTTTTTGCTTTTTCTACCTTCTC TTTTATTGGAAAAATCTGTCCTTTTAGAAGCTGTATAATGTTTCTGGCTCTCAGCCTTGCTAATTGTTTCACTTGTTTTG GTATTTGTTTTTCCATCTTACCTTACAGGAAGTTGTTTAAGGATTAACTTAGAAATAATCTTTTGGATAATTTTGGAGGG TGCATATGGCGATGCAAACTGCTAATCTCATAGAACATGAAGGGATTGCGCACAATTTTGTTGGGCAGTTGTCATCTGCA ACTTCAGCACCATGGTGGAGTGCTTTTGGATCTCAAGCTGTTTATGGTGAGTCTTGTGGCCAAATGAAACCCTTTTCGTT GGAGCCGCCTATCTCGGTAGACCAACTTGCTGCCGGTAAGCAATCGGCTAGAGGAGCTGAACAAGTGTTGGCCAAAGGAC ACACAACTCAGTTTACCATCTTCCCAGGTATTTAATTTGATTGTGGATGTATGATGCACAAACATGTAAATAACACAATA AGTTGGTTTTGGTAAAACTGACCGTAGTAAAAATGAGTTCAAAGTGAAGTGATTTATGTTTGGATGCATTAATGAAATAA GTGAATTTTGTAGGGTAATGTTGTGACATCTAGTTGCAAAATCTCACAATTAATTATGTTCAACGCAAAAGCTACTCTGT CTAGCTTCTAACAAATTGATTTTGGGACTGGAATCAATTGTCCAAGATGACTCCCAAAAATCTATATTGTCATCCGAAAG TGGTTTTACTCGGGGAGAATTGATTCTAAGGGAAGCTGCAAATATCAGTGTAGTTGCACATGATTTGGGACTTCAAAGAC AAAGCAAGCAATATTCTTTTCTGCTAAGCTTTTGGCAAGTAAAAACTTTGCAGCATCTCTTGCTATAGTCATATCTTGGG TTCTTTTTATTTCCATGAATGGGACATGGTTAAATATCTTCCATATGAGGGCCCATTTTCATTATAAGTCATTCTTAGTT GAGAGCAGAAAGATATGCAAAGTATAGAGCTTCTTGTTAGAATTCTGAATTGCTTTAAACTATCAGAGAAAAGCTTCTTT TTTCCCATTTGTTTTGAACTTTGAAGTTACAGTTTTTGCTGCACTTGACACCAACTTTCCTGTGGGATTAACTTTTAAGA TGTTTCTTCTTCAGATGATTGTAAAGTGTTAGGTAATGCACAGAAGCCTCAGACAACCATATCACTGCAGTCATCACCTA CTGATACCCACTCTCGTTTTGAGCTAGGATTTAGTCAGCCTATGGTAAAACCTCTGCAAAACAAAACCACTTTGATGATT TAGTATTTTGTTTGTAGACATATTTTGCTTATGCTTGGTATCTTTTCTTTTGTAGATCTGTGCTAAGTATCCTTACACGG ATCAATTTTATGGGCTCTTCTCAACTTATGGACCTCAAATTTCGGTTTGTCTTTTACTTCAGCAAGCTTCTTGATCTACA TAATCCAGACTGTGCTTTCATCATGGTTTTGCCTTTAGTTATCATTTGGTGATTGACTGGTAAATTTTTTCCTACTTATT CATCAATGTATGTATCGTGCTTATCAATATAGGGACGTATAATGCTGCCACTTAACCTGACAACCGATGAAGGACCAATT TACGTTAATGCTAAGCAGTACCATGGAATCATTAGGCGTCGGCAGTCTCGTGCCAAAGCTGTGCTTGATCGCAAAATGAC TAAACGTCGTAAGGTATGATTCCTCATATGGGTGTCCCAATTTTTTGTCATTCTCAAACATTATTTTGGTTTCAAAGCCC TGTAATATGGAAGCTGCTTTGGTCTCAACTAATTTGAGTTGAATTATGTGGACTCAATTAAGGCCTAAACTCTCCTCATG CTTGTTTTTTCTTTCCACAAAACTTGCACCTGAAACCTTGTTTAAGGAGAACTGAGCATTTTCCAATTTGGACCATCAAG AATTGATTTTGTCATCTTTAAACTAATGAATATAATATGGCTCTAGTCTTGGCTTTAGAACATTTTAGTGTTGATAGGAT GGTCTGACCAAATTTATGTGGAAAGTGGTGCACCATCACTGTCAGTGCAAAGTAATTCTGTACTTGACAAGAGCTTTGTT AGCTGTAGGCTGATTACAAATTTCAACTATGTGTGAAATGGTATTGTTTCCTTTTCTCTTCTTTTAAGAGCTATTTGTGT TTGTATTTGTCTTACAGCCCTATTTGCATGAGTCCCGCCATCTCCATGCACTGCGACGACCAAGAGGATGTGGTGGTCGT TTCTTGAACACAAAGGTTTCTGCTAATGGAAATGGCAAAACTGGAAGGGACGTGAAGAAAACTGGTGGTGAACAGCTACA GTCCAGTGGTTCTCAGGGTTCTGATGTCTTTCAATCTGAGGTTGGAACTTTAAACTCTTCGAAAGAGACTAATGGGAGCA GTCCAAATGTTTCTGGTTTAGAGGTGACTAGCATGTATTCAAGGGGAGGTTTTGACACCTTTTCTTTCAACCATCTTGGA TCTTCTGTCTACCCTCTGGCAGACATGGTCGATTGTGGGCGTGGCATCATGCCCACAAAATGGGTTGCAGCGGGAGGTAA CAGCTGCAACCTTAACACTTGATCGGCAAAGAATCAAGTGCAGGCTTGGCGCAATGTTGTACCAAACCCTGTCCTTGATG AGGCCAGATAGCAGTGGGCTTGTCTCCGCATCTGGTCTTAAGGCAATCCATCCTTGGCTCATTCTTTGGCAGTTCATCCT TGGCTCATTGTACTATAGGTATCATCTGTCTTACTGTTCAGGAATGTCTCAGTATGATATCCTGATACAGAAGGCAATTG TGTGTCTGTCTTTGTGTGAAAATAAAAAAGCACAGACATTCTAGTTATGTGTGCTTTCATTAACGCCTGAATCTGGTGTT TTGTTCTGTATTTCTGACTTTGTGGATCAATGTAACATAGAAGTTTGGTATGTTATTTGTTAGAAAACTAAAGCATAGCA ATGTCAAAATTTTATTATGTTATGCATTTGAGAATTAGCAAGTACAGCAAATCAGCAAACAATTCCAATCGATGAACTTT AGAAAATTGTTGGACCAGTTGATAACACATTAATCCATCAGCTGAATATCAAGAATTATCAACCAGACGACTCTTGTTGA CATCAGGATGGTTTATTCAAGAATTATAAACCAGATAACCATTCATGTTCTCATCAGGATGGTTTATCAATAAATATATA CTGCCTTCGTTTCTTATATGGTTTAGAAAAGGTGTCAACCAAATCTAGGAAAATTTCCTTTAAGATTCAAAGGGTTTAAG AGAGAATTCCATAGGTGGCACAAGAAGACCCTCCAATAGAATGATTTAGAATTTTTCAAGAGGTTGTTAGAGATGCAGAG C
CDS sequence (LotjaGi1g1v0738200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGATGCAAACTGCTAATCTCATAGAACATGAAGGGATTGCGCACAATTTTGTTGGGCAGTTGTCATCTGCAACTTC AGCACCATGGTGGAGTGCTTTTGGATCTCAAGCTGTTTATGGTGAGTCTTGTGGCCAAATGAAACCCTTTTCGTTGGAGC CGCCTATCTCGGTAGACCAACTTGCTGCCGGTAAGCAATCGGCTAGAGGAGCTGAACAAGTGTTGGCCAAAGGACACACA ACTCAGTTTACCATCTTCCCAGATGATTGTAAAGTGTTAGGTAATGCACAGAAGCCTCAGACAACCATATCACTGCAGTC ATCACCTACTGATACCCACTCTCGTTTTGAGCTAGGATTTAGTCAGCCTATGATCTGTGCTAAGTATCCTTACACGGATC AATTTTATGGGCTCTTCTCAACTTATGGACCTCAAATTTCGGGACGTATAATGCTGCCACTTAACCTGACAACCGATGAA GGACCAATTTACGTTAATGCTAAGCAGTACCATGGAATCATTAGGCGTCGGCAGTCTCGTGCCAAAGCTGTGCTTGATCG CAAAATGACTAAACGTCGTAAGCCCTATTTGCATGAGTCCCGCCATCTCCATGCACTGCGACGACCAAGAGGATGTGGTG GTCGTTTCTTGAACACAAAGGTTTCTGCTAATGGAAATGGCAAAACTGGAAGGGACGTGAAGAAAACTGGTGGTGAACAG CTACAGTCCAGTGGTTCTCAGGGTTCTGATGTCTTTCAATCTGAGGTTGGAACTTTAAACTCTTCGAAAGAGACTAATGG GAGCAGTCCAAATGTTTCTGGTTTAGAGGTGACTAGCATGTATTCAAGGGGAGGTTTTGACACCTTTTCTTTCAACCATC TTGGATCTTCTGTCTACCCTCTGGCAGACATGGTCGATTGTGGGCGTGGCATCATGCCCACAAAATGGGTTGCAGCGGGA GGTAACAGCTGCAACCTTAACACTTGA
Protein sequence (LotjaGi1g1v0738200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAMQTANLIEHEGIAHNFVGQLSSATSAPWWSAFGSQAVYGESCGQMKPFSLEPPISVDQLAAGKQSARGAEQVLAKGHT TQFTIFPDDCKVLGNAQKPQTTISLQSSPTDTHSRFELGFSQPMICAKYPYTDQFYGLFSTYGPQISGRIMLPLNLTTDE GPIYVNAKQYHGIIRRRQSRAKAVLDRKMTKRRKPYLHESRHLHALRRPRGCGGRFLNTKVSANGNGKTGRDVKKTGGEQ LQSSGSQGSDVFQSEVGTLNSSKETNGSSPNVSGLEVTSMYSRGGFDTFSFNHLGSSVYPLADMVDCGRGIMPTKWVAAG GNSCNLNT
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 5 | 319 | 315 | 2.3E-167 | – | |
| PANTHER | 5 | 319 | 315 | 2.3E-167 | ||
| SMART | 158 | 219 | 62 | 2.5E-34 | ||
| ProSiteProfiles | 159 | 219 | 61 | 35.654 | ||
| Pfam | 162 | 216 | 55 | 7.2E-25 | ||
| PRINTS | 162 | 184 | 23 | 7.4E-23 | ||
| PRINTS | 193 | 216 | 24 | 7.4E-23 | ||
| MobiDBLite | 220 | 252 | 33 | - | – | |
| MobiDBLite | 236 | 252 | 17 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA-binding transcription factor activity | A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons. | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. |
Expression pattern of LotjaGi1g1v0738200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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