Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0738400 |
| Transcript ID | LotjaGi1g1v0738400.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | B3 domain-containing protein family; TAIR: AT3G18990.1 AP2/B3-like transcriptional factor family protein; Swiss-Prot: sp|Q8L3W1|VRN1_ARATH B3 domain-containing transcription factor VRN1; TrEMBL-Plants: tr|G7L911|G7L911_MEDTR Transcriptional factor B3 family protein; Found in the gene: LotjaGi1g1v0738400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:131286192..131289848) extracted from Lotus japonicus Gifu genome v1.2.
GGAAAAAGAAGGAGATATAAGAAGGTCCCTTCTATAGTTTCCTCTATCAAATTTGGTCAACTTTTTGATGTTTCAGGGTC CCAATTCACTGACAAATGTAATAAAATAGGCATATGAGTATGACACGTAGAAAACTTAAATGATACAATATTGAAAATAA TTTATTTTTCTCATTTCATTCGTATACATTTGTCATAAAAAGCGAAATGAGTAAGATACTAGCTCAATTCTTCTCCATCA TCTCATTTTCTTAGTAAGAAAATCACTAGTCCTAACAACATCCATGACTTGCAACAAGCGTGATAAGAATTCTGCAATCC GTTTCTTTAAGATCATCACAGCAACAAGTCTTGAAGCTGGAAAATTGGTAAACATTCTCTCCTTTATCTCCTCATTTTAT ATCTTGTTTGGGATTTTTAGTATTATCAGCTAGAAACTGCTGTCACAGTACATTATATACCACAAGACGCACATGCATGG CCCCAAGTATACACAAAGTTCCTCCCTTTCATGCATTTGGAGTGATCATTCATGAAATAGAGTCATTAGTAGAATTGATT GAAACAAATTGAATTTCTCTGTTATGCTTGTGAGTTTTATCATGGCATGTTAACATTAAGCTAAGAGGGTGAGACTCGGT GCAACAAATAAGGTTGTTGTATTGATGTCATGTGCAACAAGTCTTGAAGCTGGAAAACTGGAAACATTCTCTCCTTCATC TCCTCCTTTTCTCATTCTGCTCATTTCTATCTTCTTTGGGATTTTCACTATTCTCTGCCAGAAAATTCTGTCACAGTACA TTATACTACTACAAGACATACATGCATGTCCCCAATTATACACAAAGTTCCTCCCTTTCAAGATATAGGATCATTAGTAC AATCGATTAGAACAAATTGAATTTCTCTGTTATGCTTGTGAATTTTATCAAGCATGCTAACATTAAGCTCTATGCAGAAG GTTCCAAATGGTTTCACTAGGAAACATGGTGGTGATGTGTCAAATTCAGTGTTTCTGAAGCCTCCAGATGACAAAAAATG GAAGATACACTGGACTAAAGATCAAGATGGTTATATTTGGTTTGAAAAGGGTTGGAAAGAATTTGCTTCATACTACTCCC TTGATCATGGCCACTTGATATTGTTTGAATACAACAAGACAGTGCCTTCTCATTTTGAAGTCCACATATTTGACAAAAGT ACCCTTGAAATAGAATATCCTTTCCATGGGAGTAAAGATGAACAGAACAACTTTGATCAGATTTTGGATGAGAGACAGAA ATGTAAGAAGAGTAGACTGAAATCACCAGAGTCATGTCCTCAGCCAAGGAAGAAATTGAGAACTTGCACAAGTGGAAATG TTGGAAGAAGCTCCAAATTGCCAAAGATGCCTCAGCATGTTAATGGGACAGAATTTGAGAACTCAACATTTGCTGATGGT GTGTAGTTCATGATTGGACTATCCTTCTTACTTCATGATTCCATTTAAGAAATTGAGGTTCCATTTTTCATAACATACCC AAGTTGTTCAATTTTTCAGGGAATGTGGGTGGTGGTGCCCTTGAATGCCTAAAAAGGAACAAGTTAACTTGTAAAAATAC TAAAATCCCCTCTTTCAGATCTGTTATTAAACCTTCCTATGTTAGTGAATACTTGGTGAGCTAGCTTTTGACTAATTAGC ATCATTTCTGTCTGTTAAGTTAGTTTCATATCTTTTGTTTGAAGCGAAAACATAACTTGCTAGTTGTTATTTTGTGAAAT TTTCTTACTTGTCATGAAAAACCAGCATGTTCGATTAGATTTTGCAAAAAAGCATTTGGAGAACAACCAAAGTGATATCA TCATCCTTCATGACATGGATGGGAAAACTTGGAATGTTAAATATCTTCATGGAAGAAGTAGAATCAGTTCTGGATGGAGG AAATTTGTGTTAGACAATAATTTGAAAGTGGGGGATGTTTGTGATTTTGTGTTAACCAAAAGCCAACCTCTTTCTTTCAA AGTATCAATCTTGCAACTTGGGGGAGATCAACCACATTCTACTCCACCACAAGGTAATTATCCAAGTTGGTATTTCTTAA AGTATTGCCTCTGTTTAATCTTCATAGTAATGGTTGTAGTTTTCTTTCTCAGAATCTAGAGTTAATGGCTTAGACCCTGC AGCAATAATCATAGATGAAGAACGTGAAACTACTATTAACAGGAAAGGTAAATCTAAAACATAACTTCTGTTTCAAAATC ATGCTGAGTGCATCCTTAAACTACTTATTTTTGTTGTGGTACCATACAACAGCTCTAAACCAAGCAAATGAATTCGCCTC AGAATTGGAAAATCCCTATTTCATCGTCCAGATAAAGCCAAGTAACCGGAGGGATTACAGACAGGTAAGGTTTTTTAAGC AGCAAATTAAAGAAGTGCAGTGATAGATCCTCTCATGTCACATAATATTAACATTGTCACGCTCAATTTTGTGTCTAGTG TCTATCAACATAATCTTGTTGGTTTTTCAAGTGAGTTTGAAGTCCGACATTGCATAGAAATTAGCTAGTTGAAAACTATC TGAGAGAAAAACTCACGAACCTAATACCTTAAAGATTTTGAGTAAAGATATGTTTATCTTGGTGGTCTTGGTGTTACTTC ATTTGTGCATGTTCTACTCCTTTGGAATCCCCATGTCTCCCTTACAGATCTCATTAATATCCCCTATGTGTTTGGGCACG AGTTGAGTTAACATGAGTTCCATTCACTTTTTGCCTCACGGTTCCAGCTGGTATCCAAACATTTAATATATACATATATA GAGATACAATTATAGACACAAAATCTCACGATGACAAAATCATATTATATAAAACAACATGGAAGATCCTAATTTTAGAA TTCATTACATGTATCTCTATGGGGGTTGTTTTACTCCTTTCTAGTACCAAAAAAGGTTTAATTTTTTTATCATGCTTGCA GCAGGAAGTTAGTGTTGTTGTTTAATGAACTGTTAGGCTCTGATCTTGGTGTGAACAAAATATAACTTTGGTGCAGCAGG AAGTATGTATTGACTTTGTCAGAAACTACTTCAGTCGAAAGCAGTGGTTGATGTTACGATTTGAAAAGAAACCGTGGCGT GTGAAGTTGAACCGTTATCCTAACGCGGGTACTGCCAAGTTGTGTAAAGGTTGGGCCAGGTTTGCAAGAAAAATTAAATT GGTAGCTGGAGATGTTTGTGTATTCGAACTCATCAACAAGGAAGATGCACATGCTGTGCCTGAGCTTGATGTTCATGTTT TCAAAGGCTAATGCCTAAGGTTAAGGCAATAATATATTTGTAGCTGCTTTGGTAAGGTTAAGGTAAATCTATGAACATGT TATCTCTACTTCCCAATACAATGGGTGAAACTGAAATTGATCTTTTTATGGTAATGTAAATGTAAGTATTAATCCTTAAA TATGTAAATCCTGAACAGATGATCATGTTTGTAATGCTTTTTGGTGATGGGCGTAATGTACCTAAGTTGGCTAAATATGT GGTACTTTGGTTGCAGAGTGAATTCTGTAAACTCAATTCTCTTTTTGGAGCCCTATAGAAATTTACATTGAAGAAAAGAT CCTCAACCAATCATTGAACTAAAGGGTTAGTTAATTCCTGATTTCTGTGAATGTTAC
CDS sequence (LotjaGi1g1v0738400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGACTTGCAACAAGCGTGATAAGAATTCTGCAATCCGTTTCTTTAAGATCATCACAGCAACAAGTCTTGAAGCTGGAAA ATTGAAGGTTCCAAATGGTTTCACTAGGAAACATGGTGGTGATGTGTCAAATTCAGTGTTTCTGAAGCCTCCAGATGACA AAAAATGGAAGATACACTGGACTAAAGATCAAGATGGTTATATTTGGTTTGAAAAGGGTTGGAAAGAATTTGCTTCATAC TACTCCCTTGATCATGGCCACTTGATATTGTTTGAATACAACAAGACAGTGCCTTCTCATTTTGAAGTCCACATATTTGA CAAAAGTACCCTTGAAATAGAATATCCTTTCCATGGGAGTAAAGATGAACAGAACAACTTTGATCAGATTTTGGATGAGA GACAGAAATGTAAGAAGAGTAGACTGAAATCACCAGAGTCATGTCCTCAGCCAAGGAAGAAATTGAGAACTTGCACAAGT GGAAATGTTGGAAGAAGCTCCAAATTGCCAAAGATGCCTCAGCATGTTAATGGGACAGAATTTGAGAACTCAACATTTGC TGATGGGAATGTGGGTGGTGGTGCCCTTGAATGCCTAAAAAGGAACAAGTTAACTTGTAAAAATACTAAAATCCCCTCTT TCAGATCTGTTATTAAACCTTCCTATGTTAGTGAATACTTGCATGTTCGATTAGATTTTGCAAAAAAGCATTTGGAGAAC AACCAAAGTGATATCATCATCCTTCATGACATGGATGGGAAAACTTGGAATGTTAAATATCTTCATGGAAGAAGTAGAAT CAGTTCTGGATGGAGGAAATTTGTGTTAGACAATAATTTGAAAGTGGGGGATGTTTGTGATTTTGTGTTAACCAAAAGCC AACCTCTTTCTTTCAAAGTATCAATCTTGCAACTTGGGGGAGATCAACCACATTCTACTCCACCACAAGAATCTAGAGTT AATGGCTTAGACCCTGCAGCAATAATCATAGATGAAGAACGTGAAACTACTATTAACAGGAAAGCTCTAAACCAAGCAAA TGAATTCGCCTCAGAATTGGAAAATCCCTATTTCATCGTCCAGATAAAGCCAAGTAACCGGAGGGATTACAGACAGCAGG AAGTATGTATTGACTTTGTCAGAAACTACTTCAGTCGAAAGCAGTGGTTGATGTTACGATTTGAAAAGAAACCGTGGCGT GTGAAGTTGAACCGTTATCCTAACGCGGGTACTGCCAAGTTGTGTAAAGGTTGGGCCAGGTTTGCAAGAAAAATTAAATT GGTAGCTGGAGATGTTTGTGTATTCGAACTCATCAACAAGGAAGATGCACATGCTGTGCCTGAGCTTGATGTTCATGTTT TCAAAGGCTAA
Protein sequence (LotjaGi1g1v0738400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MTCNKRDKNSAIRFFKIITATSLEAGKLKVPNGFTRKHGGDVSNSVFLKPPDDKKWKIHWTKDQDGYIWFEKGWKEFASY YSLDHGHLILFEYNKTVPSHFEVHIFDKSTLEIEYPFHGSKDEQNNFDQILDERQKCKKSRLKSPESCPQPRKKLRTCTS GNVGRSSKLPKMPQHVNGTEFENSTFADGNVGGGALECLKRNKLTCKNTKIPSFRSVIKPSYVSEYLHVRLDFAKKHLEN NQSDIIILHDMDGKTWNVKYLHGRSRISSGWRKFVLDNNLKVGDVCDFVLTKSQPLSFKVSILQLGGDQPHSTPPQESRV NGLDPAAIIIDEERETTINRKALNQANEFASELENPYFIVQIKPSNRRDYRQQEVCIDFVRNYFSRKQWLMLRFEKKPWR VKLNRYPNAGTAKLCKGWARFARKIKLVAGDVCVFELINKEDAHAVPELDVHVFKG
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 3 | 304 | 302 | 5.6E-82 | – | |
| PANTHER | 3 | 304 | 302 | 5.6E-82 | ||
| Gene3D | 5 | 110 | 106 | 2.6E-21 | ||
| SUPERFAMILY | 11 | 109 | 99 | 2.94E-19 | ||
| CDD | 13 | 107 | 95 | 3.14891E-15 | ||
| ProSiteProfiles | 13 | 109 | 97 | 12.351 | ||
| SMART | 14 | 109 | 96 | 9.2E-11 | ||
| Pfam | 14 | 108 | 95 | 1.3E-12 | ||
| MobiDBLite | 141 | 175 | 35 | - | – | |
| MobiDBLite | 153 | 167 | 15 | - | – | |
| Gene3D | 199 | 305 | 107 | 3.5E-25 | ||
| SUPERFAMILY | 208 | 304 | 97 | 6.47E-21 | ||
| ProSiteProfiles | 212 | 306 | 95 | 12.844 | ||
| CDD | 212 | 303 | 92 | 3.3243E-20 | ||
| SMART | 214 | 306 | 93 | 3.8E-14 | ||
| Pfam | 215 | 302 | 88 | 2.7E-14 | ||
| Gene3D | 336 | 456 | 121 | 2.2E-22 | ||
| PANTHER | 338 | 445 | 108 | 5.6E-82 | – | |
| PANTHER | 338 | 445 | 108 | 5.6E-82 | ||
| SUPERFAMILY | 354 | 441 | 88 | 3.53E-14 | ||
| CDD | 356 | 455 | 100 | 1.21875E-12 | ||
| Pfam | 358 | 443 | 86 | 4.0E-9 | ||
| SMART | 358 | 455 | 98 | 0.0061 | ||
| ProSiteProfiles | 397 | 456 | 60 | 9.968 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). |
Expression pattern of LotjaGi1g1v0738400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…