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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0738400 |
| Transcript ID | LotjaGi1g1v0738400.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | B3 domain-containing protein family; TAIR: AT3G18990.1 AP2/B3-like transcriptional factor family protein; Swiss-Prot: sp|Q8L3W1|VRN1_ARATH B3 domain-containing transcription factor VRN1; TrEMBL-Plants: tr|G7L911|G7L911_MEDTR Transcriptional factor B3 family protein; Found in the gene: LotjaGi1g1v0738400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:131286192..131289848) extracted from Lotus japonicus Gifu genome v1.2.
GGAAAAAGAAGGAGATATAAGAAGGTCCCTTCTATAGTTTCCTCTATCAAATTTGGTCAACTTTTTGATGTTTCAGGGTC CCAATTCACTGACAAATGTAATAAAATAGGCATATGAGTATGACACGTAGAAAACTTAAATGATACAATATTGAAAATAA TTTATTTTTCTCATTTCATTCGTATACATTTGTCATAAAAAGCGAAATGAGTAAGATACTAGCTCAATTCTTCTCCATCA TCTCATTTTCTTAGTAAGAAAATCACTAGTCCTAACAACATCCATGACTTGCAACAAGCGTGATAAGAATTCTGCAATCC GTTTCTTTAAGATCATCACAGCAACAAGTCTTGAAGCTGGAAAATTGGTAAACATTCTCTCCTTTATCTCCTCATTTTAT ATCTTGTTTGGGATTTTTAGTATTATCAGCTAGAAACTGCTGTCACAGTACATTATATACCACAAGACGCACATGCATGG CCCCAAGTATACACAAAGTTCCTCCCTTTCATGCATTTGGAGTGATCATTCATGAAATAGAGTCATTAGTAGAATTGATT GAAACAAATTGAATTTCTCTGTTATGCTTGTGAGTTTTATCATGGCATGTTAACATTAAGCTAAGAGGGTGAGACTCGGT GCAACAAATAAGGTTGTTGTATTGATGTCATGTGCAACAAGTCTTGAAGCTGGAAAACTGGAAACATTCTCTCCTTCATC TCCTCCTTTTCTCATTCTGCTCATTTCTATCTTCTTTGGGATTTTCACTATTCTCTGCCAGAAAATTCTGTCACAGTACA TTATACTACTACAAGACATACATGCATGTCCCCAATTATACACAAAGTTCCTCCCTTTCAAGATATAGGATCATTAGTAC AATCGATTAGAACAAATTGAATTTCTCTGTTATGCTTGTGAATTTTATCAAGCATGCTAACATTAAGCTCTATGCAGAAG GTTCCAAATGGTTTCACTAGGAAACATGGTGGTGATGTGTCAAATTCAGTGTTTCTGAAGCCTCCAGATGACAAAAAATG GAAGATACACTGGACTAAAGATCAAGATGGTTATATTTGGTTTGAAAAGGGTTGGAAAGAATTTGCTTCATACTACTCCC TTGATCATGGCCACTTGATATTGTTTGAATACAACAAGACAGTGCCTTCTCATTTTGAAGTCCACATATTTGACAAAAGT ACCCTTGAAATAGAATATCCTTTCCATGGGAGTAAAGATGAACAGAACAACTTTGATCAGATTTTGGATGAGAGACAGAA ATGTAAGAAGAGTAGACTGAAATCACCAGAGTCATGTCCTCAGCCAAGGAAGAAATTGAGAACTTGCACAAGTGGAAATG TTGGAAGAAGCTCCAAATTGCCAAAGATGCCTCAGCATGTTAATGGGACAGAATTTGAGAACTCAACATTTGCTGATGGT GTGTAGTTCATGATTGGACTATCCTTCTTACTTCATGATTCCATTTAAGAAATTGAGGTTCCATTTTTCATAACATACCC AAGTTGTTCAATTTTTCAGGGAATGTGGGTGGTGGTGCCCTTGAATGCCTAAAAAGGAACAAGTTAACTTGTAAAAATAC TAAAATCCCCTCTTTCAGATCTGTTATTAAACCTTCCTATGTTAGTGAATACTTGGTGAGCTAGCTTTTGACTAATTAGC ATCATTTCTGTCTGTTAAGTTAGTTTCATATCTTTTGTTTGAAGCGAAAACATAACTTGCTAGTTGTTATTTTGTGAAAT TTTCTTACTTGTCATGAAAAACCAGCATGTTCGATTAGATTTTGCAAAAAAGCATTTGGAGAACAACCAAAGTGATATCA TCATCCTTCATGACATGGATGGGAAAACTTGGAATGTTAAATATCTTCATGGAAGAAGTAGAATCAGTTCTGGATGGAGG AAATTTGTGTTAGACAATAATTTGAAAGTGGGGGATGTTTGTGATTTTGTGTTAACCAAAAGCCAACCTCTTTCTTTCAA AGTATCAATCTTGCAACTTGGGGGAGATCAACCACATTCTACTCCACCACAAGGTAATTATCCAAGTTGGTATTTCTTAA AGTATTGCCTCTGTTTAATCTTCATAGTAATGGTTGTAGTTTTCTTTCTCAGAATCTAGAGTTAATGGCTTAGACCCTGC AGCAATAATCATAGATGAAGAACGTGAAACTACTATTAACAGGAAAGGTAAATCTAAAACATAACTTCTGTTTCAAAATC ATGCTGAGTGCATCCTTAAACTACTTATTTTTGTTGTGGTACCATACAACAGCTCTAAACCAAGCAAATGAATTCGCCTC AGAATTGGAAAATCCCTATTTCATCGTCCAGATAAAGCCAAGTAACCGGAGGGATTACAGACAGGTAAGGTTTTTTAAGC AGCAAATTAAAGAAGTGCAGTGATAGATCCTCTCATGTCACATAATATTAACATTGTCACGCTCAATTTTGTGTCTAGTG TCTATCAACATAATCTTGTTGGTTTTTCAAGTGAGTTTGAAGTCCGACATTGCATAGAAATTAGCTAGTTGAAAACTATC TGAGAGAAAAACTCACGAACCTAATACCTTAAAGATTTTGAGTAAAGATATGTTTATCTTGGTGGTCTTGGTGTTACTTC ATTTGTGCATGTTCTACTCCTTTGGAATCCCCATGTCTCCCTTACAGATCTCATTAATATCCCCTATGTGTTTGGGCACG AGTTGAGTTAACATGAGTTCCATTCACTTTTTGCCTCACGGTTCCAGCTGGTATCCAAACATTTAATATATACATATATA GAGATACAATTATAGACACAAAATCTCACGATGACAAAATCATATTATATAAAACAACATGGAAGATCCTAATTTTAGAA TTCATTACATGTATCTCTATGGGGGTTGTTTTACTCCTTTCTAGTACCAAAAAAGGTTTAATTTTTTTATCATGCTTGCA GCAGGAAGTTAGTGTTGTTGTTTAATGAACTGTTAGGCTCTGATCTTGGTGTGAACAAAATATAACTTTGGTGCAGCAGG AAGTATGTATTGACTTTGTCAGAAACTACTTCAGTCGAAAGCAGTGGTTGATGTTACGATTTGAAAAGAAACCGTGGCGT GTGAAGTTGAACCGTTATCCTAACGCGGGTACTGCCAAGTTGTGTAAAGGTTGGGCCAGGTTTGCAAGAAAAATTAAATT GGTAGCTGGAGATGTTTGTGTATTCGAACTCATCAACAAGGAAGATGCACATGCTGTGCCTGAGCTTGATGTTCATGTTT TCAAAGGCTAATGCCTAAGGTTAAGGCAATAATATATTTGTAGCTGCTTTGGTAAGGTTAAGGTAAATCTATGAACATGT TATCTCTACTTCCCAATACAATGGGTGAAACTGAAATTGATCTTTTTATGGTAATGTAAATGTAAGTATTAATCCTTAAA TATGTAAATCCTGAACAGATGATCATGTTTGTAATGCTTTTTGGTGATGGGCGTAATGTACCTAAGTTGGCTAAATATGT GGTACTTTGGTTGCAGAGTGAATTCTGTAAACTCAATTCTCTTTTTGGAGCCCTATAGAAATTTACATTGAAGAAAAGAT CCTCAACCAATCATTGAACTAAAGGGTTAGTTAATTCCTGATTTCTGTGAATGTTAC
CDS sequence (LotjaGi1g1v0738400.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGACTTGCAACAAGCGTGATAAGAATTCTGCAATCCGTTTCTTTAAGATCATCACAGCAACAAGTCTTGAAGCTGGAAA ATTGAAGGTTCCAAATGGTTTCACTAGGAAACATGGTGGTGATGTGTCAAATTCAGTGTTTCTGAAGCCTCCAGATGACA AAAAATGGAAGATACACTGGACTAAAGATCAAGATGGTTATATTTGGTTTGAAAAGGGTTGGAAAGAATTTGCTTCATAC TACTCCCTTGATCATGGCCACTTGATATTGTTTGAATACAACAAGACAGTGCCTTCTCATTTTGAAGTCCACATATTTGA CAAAAGTACCCTTGAAATAGAATATCCTTTCCATGGGAGTAAAGATGAACAGAACAACTTTGATCAGATTTTGGATGAGA GACAGAAATGTAAGAAGAGTAGACTGAAATCACCAGAGTCATGTCCTCAGCCAAGGAAGAAATTGAGAACTTGCACAAGT GGAAATGTTGGAAGAAGCTCCAAATTGCCAAAGATGCCTCAGCATGTTAATGGGACAGAATTTGAGAACTCAACATTTGC TGATGGGAATGTGGGTGGTGGTGCCCTTGAATGCCTAAAAAGGAACAAGTTAACTTGTAAAAATACTAAAATCCCCTCTT TCAGATCTGTTATTAAACCTTCCTATGTTAGTGAATACTTGCATGTTCGATTAGATTTTGCAAAAAAGCATTTGGAGAAC AACCAAAGTGATATCATCATCCTTCATGACATGGATGGGAAAACTTGGAATGTTAAATATCTTCATGGAAGAAGTAGAAT CAGTTCTGGATGGAGGAAATTTGTGTTAGACAATAATTTGAAAGTGGGGGATGTTTGTGATTTTGTGTTAACCAAAAGCC AACCTCTTTCTTTCAAAGTATCAATCTTGCAACTTGGGGGAGATCAACCACATTCTACTCCACCACAAGAATCTAGAGTT AATGGCTTAGACCCTGCAGCAATAATCATAGATGAAGAACGTGAAACTACTATTAACAGGAAAGCTCTAAACCAAGCAAA TGAATTCGCCTCAGAATTGGAAAATCCCTATTTCATCGTCCAGATAAAGCCAAGTAACCGGAGGGATTACAGACAGGAAG TATGTATTGACTTTGTCAGAAACTACTTCAGTCGAAAGCAGTGGTTGATGTTACGATTTGAAAAGAAACCGTGGCGTGTG AAGTTGAACCGTTATCCTAACGCGGGTACTGCCAAGTTGTGTAAAGGTTGGGCCAGGTTTGCAAGAAAAATTAAATTGGT AGCTGGAGATGTTTGTGTATTCGAACTCATCAACAAGGAAGATGCACATGCTGTGCCTGAGCTTGATGTTCATGTTTTCA AAGGCTAA
Protein sequence (LotjaGi1g1v0738400.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MTCNKRDKNSAIRFFKIITATSLEAGKLKVPNGFTRKHGGDVSNSVFLKPPDDKKWKIHWTKDQDGYIWFEKGWKEFASY YSLDHGHLILFEYNKTVPSHFEVHIFDKSTLEIEYPFHGSKDEQNNFDQILDERQKCKKSRLKSPESCPQPRKKLRTCTS GNVGRSSKLPKMPQHVNGTEFENSTFADGNVGGGALECLKRNKLTCKNTKIPSFRSVIKPSYVSEYLHVRLDFAKKHLEN NQSDIIILHDMDGKTWNVKYLHGRSRISSGWRKFVLDNNLKVGDVCDFVLTKSQPLSFKVSILQLGGDQPHSTPPQESRV NGLDPAAIIIDEERETTINRKALNQANEFASELENPYFIVQIKPSNRRDYRQEVCIDFVRNYFSRKQWLMLRFEKKPWRV KLNRYPNAGTAKLCKGWARFARKIKLVAGDVCVFELINKEDAHAVPELDVHVFKG
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 3 | 304 | 302 | 4.6E-82 | ||
| PANTHER | 3 | 304 | 302 | 4.6E-82 | – | |
| Gene3D | 5 | 110 | 106 | 2.5E-21 | ||
| SUPERFAMILY | 11 | 109 | 99 | 2.94E-19 | ||
| ProSiteProfiles | 13 | 109 | 97 | 12.351 | ||
| CDD | 13 | 107 | 95 | 3.53037E-15 | ||
| Pfam | 14 | 108 | 95 | 1.3E-12 | ||
| SMART | 14 | 109 | 96 | 9.2E-11 | ||
| MobiDBLite | 141 | 175 | 35 | - | – | |
| MobiDBLite | 153 | 167 | 15 | - | – | |
| Gene3D | 199 | 305 | 107 | 3.5E-25 | ||
| SUPERFAMILY | 208 | 304 | 97 | 6.47E-21 | ||
| CDD | 212 | 303 | 92 | 3.83737E-20 | ||
| ProSiteProfiles | 212 | 306 | 95 | 12.844 | ||
| SMART | 214 | 306 | 93 | 3.8E-14 | ||
| Pfam | 215 | 302 | 88 | 2.7E-14 | ||
| Gene3D | 336 | 455 | 120 | 1.2E-22 | ||
| PANTHER | 338 | 444 | 107 | 4.6E-82 | ||
| PANTHER | 338 | 444 | 107 | 4.6E-82 | – | |
| SUPERFAMILY | 352 | 453 | 102 | 1.63E-14 | ||
| CDD | 356 | 454 | 99 | 7.68947E-13 | ||
| SMART | 358 | 454 | 97 | 0.0049 | ||
| Pfam | 361 | 442 | 82 | 7.2E-9 | ||
| ProSiteProfiles | 396 | 455 | 60 | 9.968 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). |
Expression pattern of LotjaGi1g1v0738400.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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