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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0738700 |
| Transcript ID | LotjaGi1g1v0738700.1 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | FBD-associated F-box protein; TAIR: AT3G14710.1 RNI-like superfamily protein; Swiss-Prot: sp|Q9LUC4|FDL43_ARATH F-box/FBD/LRR-repeat protein At3g14710; TrEMBL-Plants: tr|A0A0B2RV50|A0A0B2RV50_GLYSO F-box/FBD/LRR-repeat protein; Found in the gene: LotjaGi1g1v0738700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:131301982..131308237) extracted from Lotus japonicus Gifu genome v1.2.
ATGAGAAATACAATGAACAGATGGATACCTCGCTGGACATTGATCAACAAGCTTGACTTAGATGATAGTGTGTTTTATTC TCCAAAGAAGAAAACTGGTGGAAAGCTGTACTTTATAAACTTTGTGAACAGGGCACTTCTTCTTACCAAATCTTCAAGTT TGGACAGCTTCTCTCTTGTGATCTATAACAAGTATGATGTGAGCCTTGTTAATACTTGGATCTCTAGTATCTTGAACAGG AATGTAAAAAACCTTCGTATTAGTTCACATTTTGATCAACATCTCCCCTTCGCCGCTCTTTCACTTTTTGAGTTGAAGTT GTTAGAAGAGTTGGAAATTTATGTGTTGTCCATTTTGGATGCTGCCTAAAACTCCTCAAGTTGTCTGGAATTGTATTTAC CATTGACTCCTCTGTTAGCATATTCATTGTGCTTGAAATTACCAGTCCTCCAAATGTTTGAGACAATAAACTGTGTTTGG TTAAATGCAAGTGTTACTATGGAAGCTCCTCTGCTTGAAAGCATTTACATAGAAAATGCAGTAGAACATGAGACACGTAG CTGTGCAATTAAGTTTTCTGCTTTGAATCTAGCAGAGTTCACTTATAATGGTTATGGGATATCACAGTCTATTTTTCTGT CTGATCCATCATCGGCTCATAACGCTTCTGCTAGTATCATTTTAGATCAGTCTGGGTGGGAATGGGAATCAAGAGTTCCA AAAACAGGATTCTGTGCTTCTCTGCTTCTCAAACAATTCAGTCAAGTGAAGTATCTCAAATTTGATGGGTCACAGGTAAA CCTTGATTATTTTTTCTAGCAAGATCATACTTTTTAATCTGCAATATCAATTGAAAACTTGTTAGCAATATATAAGTTTC ATACACCAATAATTAGTAAATAGCATGATTTGGGTTAAAAAGCTAAAGGTTGGACTATAGTAGTGGCATGTATATTTACA ACTAATTAAGTAGAATTAGAAGGAATCCATGTTTTTCCACATAGGAGATTTCCATCTGTTGTAGTATATCAATTTGTTTA TTTGTCATCCAGGTTCTGACACAACAAAGAGTGGATGTTCTACCTGAATTTGGAATGTTGAGCCATTTAGAGCTTGGCTT AGTTTCTGGTGAAGTTTTATTAGAGCTTCTCTAATGGAGTCCTTGTTTTGGGACCTTAAAATAAGATCTGGATCTTATTA GATCTCACAATTGGAGCTATCCTACATGGCATGAGATCTTAGCAAAAGCTAAGATCCGTGTCTTAGCTCAGGTACTCTCA AATGTGGGATCTTAAATAAAATAATATTTTTTTTTCTCTCCTTCAATACCATAACCAAAGTGAAAATTAGGGAGAGAAAT AAATAATATAAATATATTGGGTACTGTGGGTCCAGTCAAAAGTAAAATAAGATCCCAACCACTAGAGTGAAATATGCATG AAGACCTTATGGGTGTCTTAAATCCTATATGACAATTTGGGCCCACAAAAATTGAGTAAAGTCCCAAAATAAGTTCCTAC TATTGGAGATGCTCTTAGGCCTACTTTTAAAGTCACCGGTTCTCGAGACTCTGCATTTCAAGGTTGGTGCTTAGTAAATG AAACTAGCAACACTTCTCTTGGCAGCACTTTTAGGCCTACTCTTTTTGTCATATAAAGAGTTGCTTATTGTGACTCGTAT TGTGATAGGCGCGGTGGTTGAGATGGAGGCGGTGGTAATTGGTAATGATGGAGGTGATGGTGAAGGCAGCGGAGGTTGGT GGTGTTGAGGTGATGGCGGATGTGGATGTTAATTGTTACCTAATGGCATGATGGTGGTGGAATGTCATATTTTTATGAAT ATTTAATTATTTATGTCTTCAAAAATTATTCACTATATATACAAAAATAAAGTTTGTAAGCTACATGAGATAAAATAACT TTCATCCGTATTTTTTTTTGTACATTCAGAAAAGTAGAAGAAAAATAAACTACACAAAAACATCGTAACACAACCCCTGA ATTAAGTTGGAAGGTAAAAACTTCAACAAAAAAAAAAAATCACAGATTTACATCTTGAGTTGTTTGTCTAGTAAAGATGT TAGGGACCAAATTGCTTTCACAACCAAATTACTTTTCATCTGTAACTTAGACAACACCTACAAATATTTACTGGTTTAAT TGTAACATTTTAAAAAGAAACTGAGCAAACACACAAAATACATTATTTTTTATCTTTCACAAAATAAAACATTAAAAAGT ATTCAAAATATAATTGTTAGATTTTATTTTACAAATATTTAAAAAAAATAAAAAAGAAGTGCATAAAACATGTAACTTGA GTTGATGTAAATCACCCCCACCCCCTTATAGTGGCACAGTGAATCACCACTTTGATTCAGCTCTCCCTCTCCCTCTGTAA TGTGGTGAGTTCATGGTTGAAAAGTGAATGAGAAGATTTGCAGAAAACTGAAAATTCCCAAATCACTTTTCATCCTCGTC TTCCTTCCTTCAAAGGTGAGTCTTTGATTATTGAATTGATGCATTTTGTGTTGCATTCTGAGTTTTATCGATTGAATACG CATACCCAAAGCTTCAATTTTGAAAATGCATTACATTGTTACAGCCCAGATCAGATAGATTCTCTTAGATAACCCACCAT TTTACAAATCATAAAACCCTAAACACCAATTTTAGGTGACAAGAAACCAAAATTGAAGGTTTAATCCACTCTTCACAATC TTGTTTTACATCCAATCTATTCAAGTTTGGATCTTTTAAAACACTATGCACTTAAATTTTTAAAAGCTGTGTCAATTTTT TTATGGGCATGGGGTGAGTGAGTCTTAATTCTTGACTTGCTGTTATATCTACTTTAACTTTTGGTATAGCTAGCTATTTG AAGATGTTTATATGTAGATAGTGTTTGACATAGCTGGAAATCTGTTGAAGGGAATTAATATCAAATGAAGTCTGGTTCAA TGGTTACTGGGTCTAGCTCTAGCTTAGATATGAGGAAGAAGGGAAATGAGGGTGAAGAAGATATATTCAGCAAGCTACCT GAATTTGTTGTGGGTCACATACTCTCTCTACTCCCAACAAAAGATGCAGTTCGGACTAGTGTGTTATCCAAGAGTTGGGT ATCTCGCTGGACATTCGTCAACAAGCTGGACTTAGATGATAGTGTGTTCTATTCTCCAAAGAAGAAAACTTGTGGAGAAC AGTGCTTCATAGACTTTGTGAACAGGGCACTTCTTCTTACCAAATCTTCGAGTTTGGACAGTTTCTCTCTTGTGATCGGT AACGAGTATGATGCATGCCTTTTTATTACATGGATGACTAGTATCTTGAAAAGGAATGTAAAAAACCTTCGTATTAGTTC ACATTTTGATTTCCGTCTCCCCTTCCCCCCTCTTACATCTCGTTTACTTTTTGAGTCAAAGTTATTAGAAGAATTGGAAA TCAAAATTTGTTCTTGTGCGATAAGAGTTCCCCCTGTCCATGTCCATTTTGGATGCCTAAAACTCCTCAAGTTGTCTGGA ATTATATTTACCATCGAATCCTATGTTAAGCTTATGTGCCTTAGATTACCCGTCCTAAAAAAGTTTGAGACAAAAAACTG TGTTTGGTTAAATGCCAAGTGTGTTAATCTAGAAGCACCTCTGCTTGAAAGCGTTCACATAGAACATGACAGTAAGTCAG CATTACAGGAACTACTTAGCTTTGGAATCAAGATTTCTGCTTTGCACCTTGCAGAATTCACTTATTGTGGTTATGGGCTG TGGCAGCCTATTGTTCTGTCTGATCCATCAGTGGCTCATAACGCTTCAGCTAATATCATTATAGATCAGCCTGTTATTGG ACCAACAGGATATCGGGCTATAATGCTTCTCAAACAATTCAGTCAAGTGAAGCATCTCAAATTTGATGGGTCACAGGTAA ATCTTGAATTATTAGTCAATAGCATGTAGGAGATTTCCAGTTTTTTTGATGGGTCGCATGAATTATCCATCTTTTTTCAT ATAGGAGATTTCCATCTGCTGTACTGTATACATATCAGTTTGTTTGTCATCCAGGTTTCAACACTAAAAGGAGTGGCTGG TCTACCTGTATTTGGAATGTTGAGCCATTTAGAGCTTGGTTTAGTTACTGCTGCAGTTTTGTTAGGCCTACTTTTAAAGT CACCTGTTCTCGAGACTCTACATTTCAAGGTTGGTGCTGAGTAAATGAAACTAGCAACACTGCTCTGGCTGCACTATTTG TCATATATTGCTTGTTATAATAAGGTTTTTGAAGTCCCTGTCGTGACTCATTGTGATTAATCACTCACCATAGCTTTTCT ATGTTTCTTGAAATTTTTTACACTTCACACCAGACTTATATTTGACTTTGTATGATGATTTATCCTCAGGGAATATTTTG CTTCGAGCAAGAGCTTTTAAATTCTGCTGTTGTGCCTGGTTGTTTGGGAACTACCCTGCGGGTTGTGAAGTTTGATAATG TTAGTGGACTTGAGCATGAGCTGTGTTTAGCTAAATTTCTGATGGAGAATGGTGGTGTGCTGGAGAGGATGAGTTTCTCT CTTGAGAGTGAGTGGCTGGGCAAATCGAAGATGATTGAAGAATTTAAAAAGAAGTTGTTCTCATTTAAGAAACCTTTCTC CCTTGCTATTGTGGAATTTTCGAATGATTAAGTTACTACAGAACTATGGGGTAGGTACAGTCGTACAGATCTACAATGTT TTTTTTGGTAGTGCATATCATTTTACCTTGTGAATTTGTGCCTACAAATTATCCACAAATGGTGATCTGAATTTTGGGGA AAAATATATGTAAAGAGTATTTTAGTAGGAAGAATATTTTGATGTTAACCTGAAATTGTGGTATATATTTATTATTATGA CTTTAGACAAAATAGCTTTCTTTGGGAGAACAATCAAGTTCTAATTTTCTTATTTTATATCAACTGAATAGATAAGTATT AACGCTATTGACACTTACTCCCCATGTGTTTGAATTTCTTAACTAAACTGGTGTTTGAATTTTGTTGAACCTTTCATGGT TAATTGCACATTTGCTCCCCTATCTTTCACCATTGTGCAATTTTCCTCCCTCATGTTTAAAACGAGCGAATTTACTCCCT CATGTATGAATTTGTGAAAATTGGCCCCTTCCGTTAAGTTGCCATCTAAAATTAAACGGAATTGCTTATGTGGCACTACT ATTTACACCACCTTAACCTTTCTTCTGCACCACTTTACTATTTATACCACCTAGACACATAAGTAAATAAAAAAGAAAAT AAATAAAACAATTTAATTCAACAACCAACTTAAAATTAAAGCACAGTGCTGCTGCTACTCAAGCTCCACGTTTTTTTGCA CAACAGTTTCATAACATCAAAACATCCAGTAAGTAACTTGAAAAGAAGTGATTTTTCAAGCCAAGTGCAAAAATCAGTAC TTAATTACCCATTTTATCAACTCCACCGGTTTGTGTGATTTCCGGATTTGAAATGACTCTTCCATTTTCTGAATCTGATC TGGTCTATATATACCACAACTGAATTCACATAAAAACCCAAATAAAGAAACATTGAAAGATTTAATTTTTTTAATATGCA CCCAGGAACAAAATCACCGTCTTCATAATCAACATCGTCCTTGCCGTCTTCCTCTGCTAGTCCTCGCTGTCCTCCTCCGC CATTCTCATCAACCTCGTCCGAATGTTAGTGGGTCTGACCCAGAACCCCAGATTTTCCTCCTTCATCCATCGCGAATAGC CATTGGATCTGAGCTCAGAGATCGCTTCCAACCCAGATCGATACCCAAAACTCAAAGGAAGGTTGATTTTGGGTTGTGAC TGATGATTTTGAGGTGCGGAGGAGGAGAAGAATTCTGGATTTAAGAAAGCTTTGATTTTTTTTTTCTGTGTTTGGCCAAG TCCTGTGGCTCTGATGAAGAGGGGAGAGGATGGTGATAGTGGGTCTGATGACTTTGATCAAGATTTTGTGTTTATGTTTT CATTTTTCTGGAATTTGAAGAAGGGGATGAAGATGATGGAGATGAACATAGTTTCAGATTCAGATTTGGATCTGTGAATT TGGGACTTGTTGAGACGTCAGGTACAGAAGATGAAGGGATTTTGTACAAGGAACAAAGGGCTTTGGATTCAATCTGAGAT TATTTATCTAGGTTTGGAAATTTTTCTGGGTTTGAACATAGAAGAAGATGAAGATTTTTTTTTGATAGGCAGAAGAAGAT GAAGATGATGGTGATT
CDS sequence (LotjaGi1g1v0738700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAGTCTGGTTCAATGGTTACTGGGTCTAGCTCTAGCTTAGATATGAGGAAGAAGGGAAATGAGGGTGAAGAAGATAT ATTCAGCAAGCTACCTGAATTTGTTGTGGGTCACATACTCTCTCTACTCCCAACAAAAGATGCAGTTCGGACTAGTGTGT TATCCAAGAGTTGGGTATCTCGCTGGACATTCGTCAACAAGCTGGACTTAGATGATAGTGTGTTCTATTCTCCAAAGAAG AAAACTTGTGGAGAACAGTGCTTCATAGACTTTGTGAACAGGGCACTTCTTCTTACCAAATCTTCGAGTTTGGACAGTTT CTCTCTTGTGATCGGTAACGAGTATGATGCATGCCTTTTTATTACATGGATGACTAGTATCTTGAAAAGGAATGTAAAAA ACCTTCGTATTAGTTCACATTTTGATTTCCGTCTCCCCTTCCCCCCTCTTACATCTCGTTTACTTTTTGAGTCAAAGTTA TTAGAAGAATTGGAAATCAAAATTTGTTCTTGTGCGATAAGAGTTCCCCCTGTCCATGTCCATTTTGGATGCCTAAAACT CCTCAAGTTGTCTGGAATTATATTTACCATCGAATCCTATGTTAAGCTTATGTGCCTTAGATTACCCGTCCTAAAAAAGT TTGAGACAAAAAACTGTGTTTGGTTAAATGCCAAGTGTGTTAATCTAGAAGCACCTCTGCTTGAAAGCGTTCACATAGAA CATGACAGTAAGTCAGCATTACAGGAACTACTTAGCTTTGGAATCAAGATTTCTGCTTTGCACCTTGCAGAATTCACTTA TTGTGGTTATGGGCTGTGGCAGCCTATTGTTCTGTCTGATCCATCAGTGGCTCATAACGCTTCAGCTAATATCATTATAG ATCAGCCTGTTATTGGACCAACAGGATATCGGGCTATAATGCTTCTCAAACAATTCAGTCAAGTGAAGCATCTCAAATTT GATGGGTCACAGGTTTCAACACTAAAAGGAGTGGCTGGTCTACCTGTATTTGGAATGTTGAGCCATTTAGAGCTTGGTTT AGTTACTGCTGCAGTTTTGTTAGGCCTACTTTTAAAGTCACCTGTTCTCGAGACTCTACATTTCAAGGGAATATTTTGCT TCGAGCAAGAGCTTTTAAATTCTGCTGTTGTGCCTGGTTGTTTGGGAACTACCCTGCGGGTTGTGAAGTTTGATAATGTT AGTGGACTTGAGCATGAGCTGTGTTTAGCTAAATTTCTGATGGAGAATGGTGGTGTGCTGGAGAGGATGAGTTTCTCTCT TGAGAGTGAGTGGCTGGGCAAATCGAAGATGATTGAAGAATTTAAAAAGAAGTTGTTCTCATTTAAGAAACCTTTCTCCC TTGCTATTGTGGAATTTTCGAATGATTAA
Protein sequence (LotjaGi1g1v0738700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKSGSMVTGSSSSLDMRKKGNEGEEDIFSKLPEFVVGHILSLLPTKDAVRTSVLSKSWVSRWTFVNKLDLDDSVFYSPKK KTCGEQCFIDFVNRALLLTKSSSLDSFSLVIGNEYDACLFITWMTSILKRNVKNLRISSHFDFRLPFPPLTSRLLFESKL LEELEIKICSCAIRVPPVHVHFGCLKLLKLSGIIFTIESYVKLMCLRLPVLKKFETKNCVWLNAKCVNLEAPLLESVHIE HDSKSALQELLSFGIKISALHLAEFTYCGYGLWQPIVLSDPSVAHNASANIIIDQPVIGPTGYRAIMLLKQFSQVKHLKF DGSQVSTLKGVAGLPVFGMLSHLELGLVTAAVLLGLLLKSPVLETLHFKGIFCFEQELLNSAVVPGCLGTTLRVVKFDNV SGLEHELCLAKFLMENGGVLERMSFSLESEWLGKSKMIEEFKKKLFSFKKPFSLAIVEFSND
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 335 | 335 | - | – | |
| PANTHER | 17 | 459 | 443 | 3.7E-131 | – | |
| PANTHER | 17 | 459 | 443 | 3.7E-131 | – | |
| SUPERFAMILY | 25 | 77 | 53 | 1.31E-9 | ||
| Pfam | 27 | 58 | 32 | 1.3E-4 | ||
| Gene3D | 27 | 269 | 243 | 8.2E-11 | ||
| Phobius | 336 | 358 | 23 | - | – | |
| Phobius | 359 | 462 | 104 | - | – | |
| Pfam | 384 | 425 | 42 | 2.1E-8 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi1g1v0738700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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