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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0742200 |
| Transcript ID | LotjaGi1g1v0742200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | 30S ribosomal protein S8, putative; TAIR: AT4G29430.1 ribosomal protein S15A E; Swiss-Prot: sp|Q9M0E0|R15A5_ARATH 40S ribosomal protein S15a-5; TrEMBL-Plants: tr|I3TA70|I3TA70_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0742200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:131604680..131608623) extracted from Lotus japonicus Gifu genome v1.2.
CTAACTTTCAAACTAAAAAACCATTAAAAAAAACATAGAAACATGGTTCACCCTCCATCGTTGAATGTCGAATGTGCCCT TCAAGCCTGCGATTTCAAACCCTTGCCTTCACATCACTTGTTTTCGTCTCTACTGTGGTGTCGAGAGAGTGCAGAATGGG GAGGAGGATTCTGAACGATGCATTGAGGACGATGGTCAATGCCGAGAAGAGAGGCAAAGCTGCGGTGGAGCTCAGCCACA TCTCCACCGTCATCTCTTCTTTTCTCCAAATCATGAAAAACCGCGGTAAGATCATTTCACCTTCCAATCTATGAATTCTC ACTGTGTAGGTTTAGCACTTTAGCTGATGATGTTGTTTGATTTCTGATAGGTTATGTGAAGAATTTCCAAGTCTATGATC CACATAGAGTTGGGAGGATAACAGTTGAGCTACAAGGTAGGATCAATGACTGCAAGGCCCTCACATACAGGCAAGATCTC AAGGCAAGGGATATTGAAGCTTACAGATTGAATACTCTTCCAACTAATCAGGTTGGTTTTTTAATGCTTAATGTTGTTTC GTGTTCGGTCGAAGTAATGTTTTGTAGGACTAGGATGCTGCTGTTTGTATCTGTTTTTATGGAAGATTTTGAGTTTCGAA AAAATGAAATGAAAGTTAAAGAGAAGGGTAATCTTGTTAATGCCATTTTGTTTCTGTGTGTGCAGTGGGGTTATGTTGTG ATTTCGACGCCGGATGGTGTTTTGGATCATGAAGAGGCCATTAGAAAGAATGTGGGTGGTCAGGTTCTTGGTTACTTTCA TTAGAAATAATTGCTGCCGATTTATTTTGGCCTCTTAAAAATTGAATGAATTTGATCATGGAATGTTTTATTCAGCAAAA GAGGTTTTGTTTTTCTATTTTGGCCTTGTAGAGTTTTATAGCAGTTCATGCATGATTTGTGTGATGGATTGGTTTCATGC TCTGTGGAAATTAGTCCTGTTTTTGTTTAATAATAGACTTGACATGAGCAGATATCAGATAACCTAAGTTCATAATGTAA GTTATATTCACTGTTACTCTTTTGTTTTTACAAAGAATTGCAGTTCTGGGCTAGAAGAAGAACATTTCATTCTAGAAACA TTTATTCCCCAACCCTGTCTGTAAGCTTTCTCTGTTCTATATAACTAGTGATGTAAATCATTCACATCTAATGAGAATTA CACAGATTCTTTCATCACTTCTTTCCTCTGTTTCTACTTTCTTATATGGTATCGTGAGCTTGTGAGATCGGCCATGGCTC CCTCACCACCTCATACAAAGACGTCGGTGACAACGAAGTATGCTCCGGCGAGTGTACAATTCACTCATTCTCAACCTCTC TCCATCGAATTGGATGAGACGAATTTTCTGCAATGGCGTCAGTAAGTTGAAGGTCTCATTCGCGGCCATAAGCTCCAGTA TCTTGTCATTGATCCTTCTTTTCCTTCTTGCTATCTCACTGATACCGTTAGAGAAAAGGATGAGGTTAATCCTCTTTATG CTGGGTGAGAGCAATGCAATGCTCTGTTATGCACTTGGATCCTTTCCACCATTGATGTTTCTTTTCTTCCCAGAGTTCTG AATTGTCGTCATTCCTTGCAAGTTTGGAACACAATTCATGAGTTTTTTCACAATCAGACGAAGTCGACAGCTTCAAACTA AACTACGACGCTCCATTGTTAAAGGAAATTGTTCTATCACTGAGTTTTTTGTCGTTCTAGCTATCGTTGATTCATTGTCT TCAATCGGTGATCTGATTCATATGCGAAACTTGTTTGGGATTGTTCTTGTAGCTTTGTCCAGTGATTTTGACTCCTTTGT TGTTGTTGATCGTGGTCTAGATATGACCTCATTGAGTGAACTTGTGTCACTTTTGCTTGCTCATGAATCTTTCCTTGAGA AGAACGAGAGAGGCATTCACTGAAAGTTTATCAGTGAATCTCACTCAGTGTTCCGACTTCACAGTCTCAACCGTCTTCAT TTCCTCCTCCATCGGGTTCTACTCCTCAACAGTCCTTTGGAGATTATGGTCTATACCTTGACCTTCACCACACCTTTCTT TGCTATATCTTTCGGGTTCTTAGATATGAATTTATTCAGTTTTAGAATATACAAGTTTATGGGCAATTTTATGCATGAAT CAATCACCATGCAAGATTTAATGTGATAAAAATGTAGTAAACCAAAGTTATCTGCAAAAAAAATCTCCAATCTCCGTGAT GCAAGAAGAATCATACAAAGTACATGTGATATTAGCAGCAGCACTGCAGTGGACACCAAATGTATTTTGCCCCATAATTT TGCAAGGAAATTGAACTTGGAGAACCTTCAGGAAAAGTAGGCTCACATACAAGTGTGCGTTCGGATACCAGTTAAATGTA ACGTGAACAGATTTTGATCTTAATCCATAACATGAGTTTTGTACACTTTTATCTCAAAGAGAGTGTCAACGCATGTTAGC AATGATGCCAGCTGCAAGTTGTCTAAAATCTAAAACATGGCATAACCCAACTCAGCATTCAAATCAATCTCTACGAAACC TTTTCTTGCCTCAGCCAAGTCTCTCCTTGCACTCTCAAACTCAGCTTCTGCAGCAGCCAATTCACCCCTCAGCTTCTTCA TTTTAATCTCCACATCAACCACCTTATCCTTCAGCTTATTCACTGCCACTGTTCTTTCCAAATGTTCTTTCAAACCCAAT GCAGATTCAACATAAGGCTCCAGCCAAGCCAAGTCAAATCCAGAAGCCTTAACAAGCTCCTCCCACAAACTTTGAAGGTG ATTGATGGCATCTTCATTCATATCCTTCACTTTACTTGTCTTGAGGATATGTAGAACTTGACCCAAAGATGTGAATGCCC ATAGTTTGAACCTGCTAGTTCTTTTACTCTGGCTCCTTATCAGGGAAGGGTGCCAAGTGCAGGCCTCTTCCAACAGTGGA ACAAAAGCTTCTTCTTCTGCTCCTAAATTCTCCAAATCTAGGAGGTCTCTCAGAGTCAAATCTGAAACTTGAACTTCCTG TTCCGTTTGACTAGACCCATAGGTTGAGGAACTAGGTGTCTCACTTTCTTCTGATGTTTCTGTTTCTTGATCACCTAATT CAGAGTCATGGGTTGGAGTAACCTTTTTAAAGCTGGTAGATTGAATAGCGCTAACATTGGAAACACAAATATGAGCTTCA ATGATGCATGTGTTGTTCACAAGATAGCCTTGTTTAGAGTCATAGAAGTCACTGAGATTCATGAATGATGAGCCCCAGCT GCGATATCCACCATTGAACTTCTGATGAGTCTCTGGAAATGTCAAAATTTATATCTGGAATCAGAAATTTGGAATTACAG AATACAGCATGCAAATATTATCAGAAATATAATATAAAATTATTCCAACAGCTCAAACTTTGATGGCATTATGATGAGAT TGAACAATAGTAAAATGTGATGTGATGTTTGAATAAATAGCTTCATTGAAGTTCAGAACTCAAATGGTCAAAGCGGCTTT ACCATCATTACCAAATACCAAGACAAAATCATATACAATATAAGAATGGGGAAGAAAGGAAGAAAAAGCAAAGAGAAGAG AACAACTAAGTGTATGTTTGTAAGTTAAAATTCTTTGAGGGAAGAAGCTTCTCCGAGTTATTTCTAGATTCCATATTTGA TTATGAGAAAAGAGAAACTACCCTTTACAACAGACTTGTTGCCATCCAACTGATTAACCAGAGCCAACTTGAAATACGTG TTTCTGCTCCATCCATAAGCTGGTAAAGAATCCGCAACCATCAAATATAATGAAAAATGGTCAACGTTTTTCCTCAATGG ATACAGAAGAATCCGCCTGTGATAATTATCATAATCAGTGAAAAGTACAAACAGGATGTTCAAAGCAGTAATTAAAAAAT TGTTAAGATTTATTTTAAACTTAT
CDS sequence (LotjaGi1g1v0742200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTGCCCTTCAAGCCTGCGATTTCAAACCCTTGCCTTCACATCACTTGTTTTCGTCTCTACTGTGGTGTCGAGAGAGTG CAGAATGGGGAGGAGGATTCTGAACGATGCATTGAGGACGATGGTCAATGCCGAGAAGAGAGGCAAAGCTGCGGTGGAGC TCAGCCACATCTCCACCGTCATCTCTTCTTTTCTCCAAATCATGAAAAACCGCGGTTATGTGAAGAATTTCCAAGTCTAT GATCCACATAGAGTTGGGAGGATAACAGTTGAGCTACAAGGTAGGATCAATGACTGCAAGGCCCTCACATACAGGCAAGA TCTCAAGGCAAGGGATATTGAAGCTTACAGATTGAATACTCTTCCAACTAATCAGTGGGGTTATGTTGTGATTTCGACGC CGGATGGTGTTTTGGATCATGAAGAGGCCATTAGAAAGAATGTGGGTGGTCAGGTTCTTGGTTACTTTCATTAG
Protein sequence (LotjaGi1g1v0742200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MCPSSLRFQTLAFTSLVFVSTVVSRECRMGRRILNDALRTMVNAEKRGKAAVELSHISTVISSFLQIMKNRGYVKNFQVY DPHRVGRITVELQGRINDCKALTYRQDLKARDIEAYRLNTLPTNQWGYVVISTPDGVLDHEEAIRKNVGGQVLGYFH
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 24 | 24 | - | – | |
| Phobius | 1 | 7 | 7 | - | – | |
| SignalP_EUK | 1 | 24 | 24 | - | – | |
| Phobius | 8 | 19 | 12 | - | – | |
| Phobius | 20 | 24 | 5 | - | – | |
| Phobius | 25 | 157 | 133 | - | – | |
| PANTHER | 29 | 157 | 129 | 4.7E-74 | – | |
| PANTHER | 29 | 157 | 129 | 4.7E-74 | ||
| Gene3D | 30 | 96 | 67 | 5.5E-23 | – | |
| SUPERFAMILY | 31 | 157 | 127 | 1.22E-33 | ||
| Pfam | 34 | 155 | 122 | 5.6E-19 | ||
| Gene3D | 97 | 157 | 61 | 3.0E-29 | – | |
| ProSitePatterns | 127 | 144 | 18 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Structural constituent of ribosome | The action of a molecule that contributes to the structural integrity of the ribosome. | ||
| Cellular component | Ribosome | An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins. | ||
| Biological process | Translation | The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA or circRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA or circRNA. Translation ends with the release of a polypeptide chain from the ribosome. |
Expression pattern of LotjaGi1g1v0742200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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