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LotjaGi1g1v0748000.3

Overview

Field Value
Gene ID LotjaGi1g1v0748000
Transcript ID LotjaGi1g1v0748000.3
Related isoforms 2
Lotus japonicus genome version Gifu v1.2
Description ADP-ribosylation factor family protein; TAIR: AT4G02080.1 secretion-associated RAS super family 2; Swiss-Prot: sp|O04834|SAR1A_ARATH GTP-binding protein SAR1A; TrEMBL-Plants: tr|I3T3W2|I3T3W2_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0748000
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:132060496..132062068) extracted from Lotus japonicus Gifu genome v1.2.

TTGAGATTCAATTTTGTTCGTTCGTTAGTAATGGCCGATCGCTACCCTATCTGAATGCTATTGCTGACAAAATTACCATA TTGTTACTTACTCTGAATTAGGTGTACTCTTGGCTGAGACCAAAATTTCCATTTTCCTTCAATTAGCTTTTTCTTACTCA CTTTTAATTGGAAGCTAAACATATATAGAGCAATCATGTGCTTCTCGGGTTTATAGATTCCTGAAATTACCATATCTCAT ATGTTACTGTGTCTTGGTGTGAGTTTATTATTGTTATTATGATGAGAATTGGTTTTGCAGAGACTAGTCCAGCATCAGCC AACACAGTATCCCACATCAGAGGAGTTGAGTATTGGGAAGATCAAGTTCAAGGCCTTTGATCTTGGGGGTCATCAAATTG CTCGTAGAGTCTGGAAAGATTACTATGCCCAGGTCCATTTCTTAGTCTCTACATGCTTTTGCGGCCAGAAAGACGGATTA TCTTAATCATGCATTTTGTGAAAACATATGATTAGATGCCACTAGGCTTCCCTGGATATGTTAAGATTCAGTCTGGCCTT TTTCATGTGATGTTTTTTAAGGGGTGTTGACATGCTAATGTGTCTTGATCAGTCAATAATTGCAGATATAGAGCTGCATA AGAGGTTTCACTTAGGATCTTTGAAGTAGTTCTAGCTGTTAGCTAGGATAATATTTTCTTCTCATGCTCTTACTAGAATT GGCATTTAAGTTTTTAAAAAGTGAAAAGTACTCTCTTGTCGCAGAATGTTCTAAAACACCAACTTTTAACTAATAGCATG CTTTGATCACAACGTCTCTTTTTTTTTTTGAATCAATTCTGACACCTAGAAGCTACTCACAGATTGTTATTCACATAATT TATTTTGGCTTTGGAATAAACTATAGAAGGATTTCCGAACATGCTTGTAATATGAGTACAACAAAACTAAAGATCTTATG CCTGTATGTTTAATTTAAAAAAAACCCATCATCTATCTCGTTCATTGGGGGCAGAGTCATGCTGAATCGGTCATAGCTTG CTGATGCTTAGTTTTCTGTTTTCACGTTACAGGGTTCCCTTATAGTATGTTATCAGACATATCTTCCTCTGAAGCAATTT ATGATTTATTAACACGTTCAATATTTTAACTTGGAAATATTTTTTCTTGCTAAAGATCTATTATTTGGTTCTGCTTGTTA TTTGTTTATTCGTTTTATGATTATGAACACGCTGCATCCTTCTTGGATACAGGTAGATGCAGTGGTCTACTTAGTTGATG CTTACGACAAAGAAAGATTTGCCGAGTCGAAAAAGGAGCTGGATGCTCTGCTCTCTGATGAATCCTTGGCCAGTGTCCCC TTCCTTGTCCTTGGAAACAAAATAGATATTCCATATGCTGCCTCAGAAGAAGAGCTGCGTTACCATTTGGGCCTGGCCAA CTTCACCACAGGCAAGGGTAAGGTGAATTTGTCAGACACGAGTGTCCGTCCCATGGAAGTGTTCATGTGCAGTATTGTGA AGAAAATGGGTTACGGGGAAGGTTTCAAATGGGTTTCTCAGTACATCAAATAA
Download Genomic Sequence

CDS sequence (LotjaGi1g1v0748000.3) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGAGACTAGTCCAGCATCAGCCAACACAGTATCCCACATCAGAGGAGTTGAGTATTGGGAAGATCAAGTTCAAGGCCTT TGATCTTGGGGGTCATCAAATTGCTCGTAGAGTCTGGAAAGATTACTATGCCCAGGTAGATGCAGTGGTCTACTTAGTTG ATGCTTACGACAAAGAAAGATTTGCCGAGTCGAAAAAGGAGCTGGATGCTCTGCTCTCTGATGAATCCTTGGCCAGTGTC CCCTTCCTTGTCCTTGGAAACAAAATAGATATTCCATATGCTGCCTCAGAAGAAGAGCTGCGTTACCATTTGGGCCTGGC CAACTTCACCACAGGCAAGGGTAAGGTGAATTTGTCAGACACGAGTGTCCGTCCCATGGAAGTGTTCATGTGCAGTATTG TGAAGAAAATGGGTTACGGGGAAGGTTTCAAATGGGTTTCTCAGTACATCAAATAA
Download CDS Sequence

Protein sequence (LotjaGi1g1v0748000.3) extracted from Lotus japonicus Gifu v1.2 Proteins.

MRLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAQVDAVVYLVDAYDKERFAESKKELDALLSDESLASV PFLVLGNKIDIPYAASEEELRYHLGLANFTTGKGKVNLSDTSVRPMEVFMCSIVKKMGYGEGFKWVSQYIK
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
ProSiteProfiles
PS51422
1 150 150 24.687
IPR006687
Gene3D
G3DSA:3.40.50.300
1 150 150 2.9E-46 –
CDD
cd00879
2 150 149 1.86847E-97 –
Pfam
PF00025
2 150 149 1.1E-47
IPR006689
PANTHER
PTHR45684
2 151 150 4.3E-98 –
PANTHER
PTHR45684:SF11
2 151 150 4.3E-98 –
SMART
SM00178
2 150 149 1.6E-80 –
SUPERFAMILY
SSF52540
5 150 146 2.51E-30
IPR027417
PRINTS
PR00328
8 32 25 4.2E-58
IPR006689
PRINTS
PR00328
35 60 26 4.2E-58
IPR006689
PRINTS
PR00328
80 101 22 4.2E-58
IPR006689
PRINTS
PR00328
124 148 25 4.2E-58
IPR006689

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005525
Molecular function GTP binding Interacting selectively and non-covalently with GTP, guanosine triphosphate.
Subterm of
GO:0006886
Biological process Intracellular protein transport The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell.
Subterm of
Part of

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Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0748000.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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