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LotjaGi1g1v0748100.1

Overview

Field Value
Gene ID LotjaGi1g1v0748100
Transcript ID LotjaGi1g1v0748100.1
Related isoforms 2
Lotus japonicus genome version Gifu v1.2
Description Peptide chain release factor 1; TAIR: AT1G56350.1 Peptide chain release factor 2; Swiss-Prot: sp|F4I532|PRFB2_ARATH Peptide chain release factor PrfB2, chloroplastic; TrEMBL-Plants: tr|A0A0B2SEV9|A0A0B2SEV9_GLYSO Peptide chain release factor 2; Found in the gene: LotjaGi1g1v0748100
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:132063542..132067181) extracted from Lotus japonicus Gifu genome v1.2.

CACAAGCAAAAAAAAAATACCAGAAGCAATAAGCATCTTCTTCTTCTTCTTCAGTTCAATCAACCCTGAGAATCTTGTTC GTCTTCAGCATGTCCTCTTTACTACGAAGATCGCTTAGGATCACTGTCTCCTCCTTGTTTCATTCCAAACTCGTCGGAGA CTCGCATCACGCTCTCGCTTCATCAACCTGGTTCTGGTATCGCCACCTATCACATTCCCTCCCCCACCACCATACCAGTC ACTGCTTCAATTCAAATGGGTCTCGCCAAGTTCCTCAGTTTCCATCACTAGTTCGCTATTGGGCTTCTCAACCCGCCACC ACAGAACACTACTCAACCTCTGATGGGCTCACGGTCGATGGAATTCTCTCCAACAATTGGACCATTCTGGACGAGAACGA CGGCGATTGGAGGAGTCACGCCGCCGCCTTAGCTCAGTCCATTCACTTGATCAAACGCCGCTTACAGGTAACAAAAAGGT TCATTCTCAGGGTAGTTTTTTTTTCTCTTTTTTTCAGTTTCTTCTTAATTAAGCATGTGTTGATGATTTGTTTAGCCCTA GTTTTTGAATTGCTATCTGTGTTGATGATTGTTTCCTAGTTCCAATTTTTGTTTGTATTGTCTGTTTCATGGAACTTGAT TATATGTCTTTTGGTGGCAGTGGACAAAATTGAAGGTTAGGTTGGAAATGTTATCAGCCCAGCTGAACAAGCCAGACCTT TGGGATGATCCTGTGCATGCTGGCAAAATTAGCCGTGAGCACGGTTCGCTCCTTGGGAAAATGAAAGAGGTAAATGCATT GGAGCGAGAGTTGCTTGAGCATATTGAGATGATAAAGCTTGCTCGTGATGAGAATGATGCAGAATTGGAATCGGTGGGGA CTTCCTTCATCCATCACTTAGGCATGTATTCAAGTCTGTTTTTTTGACTGTAGTGGAGAAGTGTGTGCTGCCTAATAGTT TAACTCATATCCCTGTTTAATTAATGATCTAACTCATCTCAGCCTAATGCGGCATACAAATTTTGGTGGAAAAATGGAGA ACAATATAACTGAACAATCAAGTGGGTGAAGACATGGTAATTTGTTATCAAAAGTAAGAAAGTTTAAGAAAGACGATGGA ATATTTAACATTATATCAATACGTTAGATGATAGATAGCTCAAATTTCAAAATTTTGTGAGGTAGACCTGCTTAAATGCC TAAAGCATGCTTTATTTTAGTTTCTTCTCTTTTAAGTTTTGTGGTGTTAGATAGATCATTTATAATTATAAGATGCCAAC TTATATTCATGCAGAGACTGTCTTCCTTTTCAGGAATCATTGAAAGCATTGCTTGATATGAGAAGGAATGCAAAAGAAAA GGAGTTAGAGGCATTGTTGGCAGGGGAGCATGATTCTTGTTCTTGCTACATAGAGGTTGTTTTCATAGATATTTAGAAGT TGCTGATATTCCATTGGTATTTTTCTTGAAAAGTATCCTCATACACTTCTAGGTCTAAGAATAGTGAATAAAGAATATCT TGCAACTTTTCTTTTTCCCCTGTCTAGCATTAGTAGAACAGTGAACATGTTTGTGGCTATGTATGTATGTATGTGCCTAT TGATGTTGCTTGTTTTATAATTCAATATAGGTACAGGGTGGGGCTGGGGGTACTGAGAGCATGGACTGGGCTGCAATGGT CATGCAGATGTATAAGTCATGGGCCCAGCGACGTGGATATAAAGTGACTGTAGTGGATGAAATGCCTGGTGAGATTGCAG GAATCAAGGTTCTTCTTCTTACCATTCTCCATGAGTTATTTGAAAGTATTTTTAATATTTTTTCACTTAGCTATTGCACG CTTGGATTCATGACCTACAATTATCTCCCTCTTATGTAACTATGGTTTCTTAATTTCAAGTTCAAAGTTGCCTAACTTGC ATTTAAGCTTGAAGGAAGATTAGTATACATGGAAATTTCATTTCTATTTGAGTGGGGCCTCAAGTTTGACATATTTCCAT CGTGCTACACTCACTCATTCCCATATATCGTATTTTATATCATGAGGAACTGCTAGAGTCTGAATATAGATCAATTTCTT TTTTCAGCGAGCTACAATCAAAGTAGACGGTGAGTTCGCATTTGGGTATGCCAAAGCAGAAGTAGGAGTGCACAGGCTTG TACGCATATCGCCTTTTGACAGTGCTAAACGCCGACACACTTCATTTGCTGCTGTAGCAGTGATTCCAATCCTTGGCGAT GGATCTACACGTGTACAAATTAATGAATCTGATCTCCGAGTTGAACGATTTCGTGCTGGTGGTGCTGGTGGCCAGCATGT GAATACAACTGAGAGTGCTGTTAGAATAGTTCATATTCCTACAGGTGTTACTGCAACTTGTCAGAACGAAAGGTATGAAA TATGTGTATATATCCATGCATTGACTATGTTGTGTTCTTAAGTTTGGCTATGATTTGGAAGCAGATCACAACATCAGAAT AAGGCTTCGGCAATGGCTGTGCTTCAGTCAAGATTAGACCAACTTGAGATGGCACGTCAGACACAGATGAATGCACAGCA TACACAATCTCTCACTGACATAACTTGGGGCAGTCAGATACGTAGTTATGTGCTTCATGTAGGTTTGAGATTATATTTTC CCCCTCTTTTCCTTATAAGTTTTGATGATCTGAGCATTTAATTAGTATTTTTATCTATGATGCAGCCTTACCAAATGGTG AAAGATCTTAGAACTAACTATGAGGTTTCAGATCCCGACTCTGTTCTTGAGGGAGATCTAGACGGTTTCATATTGAGCTA TTTATCAGCTTCTTTGGATAAAAATGAAGGCGATGCTTAAATCAATCAAATTCCAAGATGATGGTGGCAGATTGCATGCT TTAGTGCTAAAAGGGGCATACTCTGGCATTTGCTGCATGTAGGGATGAAGTAAAATGCTCTTCAGTTGCTATCATTCCTC ATCAAGTCTATCAGAGTCCAACAAAGCATACTACTTGCTCCCCCTTGGTGTTTTTCTGGTAATATATAAATGAATAATAT GCAATTGAATATGGAAGCATGAAGCTCAAAAGCTTGACTATAGTTGGCTTGCGCTGTCGGAATAACTTCTCAATGACCCA TGTGCTGTCAGAACAAGTTCATTAAGATTCTTTTATTTAAACATGTAACTCCAGTAGAAGTTATATGATATTTGGATCTT TCTTTTTCTCCTCAGATAAAAAGATGGAAACAATAACTGTGGATGGCCTGCAAATCCTGCTCAATGAATTATGAGCCGTG GATAAATTTTTGTAATTTATTTTAGAACACGACTCTTATATATTTCAAGATTCTCCTTTTGTAAAGCTCACTTTGGTGAT TCCTACGTCTTAAAATGGATTAGTCTATAGCTATAGGCTGAGACACCCTTGATTCACATAAAAAAAGATGTAACTTTAAT TTGTTTATTTTAATATTTTAAATGAATTCAAGCTCCTTAGCATAAATAGATTTGTTAGCATCCTCTAACCATAGCCACGG GAAGTGCAATCCTAAACAATCATTGTAAGTACCACTAGGCTCTTGGTCTTGGATCAGCTGGTGGGGTTCATTCAGCTTAA TTGAGGTCTTGGTTCAAGTGTTCCGGATGCAGTTGGGTTG
Download Genomic Sequence

CDS sequence (LotjaGi1g1v0748100.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGACTGGGCTGCAATGGTCATGCAGATGTATAAGTCATGGGCCCAGCGACGTGGATATAAAGTGACTGTAGTGGATGA AATGCCTGGTGAGATTGCAGGAATCAAGCGAGCTACAATCAAAGTAGACGGTGAGTTCGCATTTGGGTATGCCAAAGCAG AAGTAGGAGTGCACAGGCTTGTACGCATATCGCCTTTTGACAGTGCTAAACGCCGACACACTTCATTTGCTGCTGTAGCA GTGATTCCAATCCTTGGCGATGGATCTACACGTGTACAAATTAATGAATCTGATCTCCGAGTTGAACGATTTCGTGCTGG TGGTGCTGGTGGCCAGCATGTGAATACAACTGAGAGTGCTGTTAGAATAGTTCATATTCCTACAGGTGTTACTGCAACTT GTCAGAACGAAAGATCACAACATCAGAATAAGGCTTCGGCAATGGCTGTGCTTCAGTCAAGATTAGACCAACTTGAGATG GCACGTCAGACACAGATGAATGCACAGCATACACAATCTCTCACTGACATAACTTGGGGCAGTCAGATACGTAGTTATGT GCTTCATCCTTACCAAATGGTGAAAGATCTTAGAACTAACTATGAGGTTTCAGATCCCGACTCTGTTCTTGAGGGAGATC TAGACGGTTTCATATTGAGCTATTTATCAGCTTCTTTGGATAAAAATGAAGGCGATGCTTAA
Download CDS Sequence

Protein sequence (LotjaGi1g1v0748100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MDWAAMVMQMYKSWAQRRGYKVTVVDEMPGEIAGIKRATIKVDGEFAFGYAKAEVGVHRLVRISPFDSAKRRHTSFAAVA VIPILGDGSTRVQINESDLRVERFRAGGAGGQHVNTTESAVRIVHIPTGVTATCQNERSQHQNKASAMAVLQSRLDQLEM ARQTQMNAQHTQSLTDITWGSQIRSYVLHPYQMVKDLRTNYEVSDPDSVLEGDLDGFILSYLSASLDKNEGDA
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
SUPERFAMILY
SSF75620
1 225 225 1.7E-92 –
SMART
SM00937
1 54 54 0.0026
IPR005139
Gene3D
G3DSA:3.30.70.1660
1 218 218 4.5E-85 –
PANTHER
PTHR43116
1 228 228 2.5E-161 –
PANTHER
PTHR43116:SF5
1 228 228 2.5E-161 –
Pfam
PF03462
2 79 78 3.0E-30
IPR005139
Gene3D
G3DSA:3.30.160.20
85 181 97 4.5E-85 –
Pfam
PF00472
91 198 108 4.5E-37
IPR000352
ProSitePatterns
PS00745
105 121 17 -
IPR000352
Coils
Coil
148 168 21 - –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003747
Molecular function Translation release factor activity Involved in catalyzing the release of a nascent polypeptide chain from a ribosome.
Subterm of
GO:0006415
Biological process Translational termination The process resulting in the release of a polypeptide chain from the ribosome, usually in response to a termination codon (UAA, UAG, or UGA in the universal genetic code).
Subterm of
Part of

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Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0748100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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