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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0748600 |
| Transcript ID | LotjaGi1g1v0748600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RNA polymerase-associated protein RTF1 like; TAIR: AT1G61040.1 plus-3 domain-containing protein; Swiss-Prot: sp|Q9C950|VIP5_ARATH Protein RTF1 homolog; TrEMBL-Plants: tr|V7CYR4|V7CYR4_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0748600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:132119242..132122611) extracted from Lotus japonicus Gifu genome v1.2.
TTCTGATTGAAGAAGTCAAAATGCTTGCAATATCTACGTATTTGAAGGAGTTAGTTTCTGTAAATCGATCAGAGTTCTAA TTTGCGTGAATTTTCATTACATTACATGAACATCGTATCTCAGTAGAAGGCTAAAACATAACAAAAGGTAGCCATTGATC TAAGGAGAACGTCTCAAACTCTTGAAGAATTTTTAACTTATTATGTTCCTGATCTTGTTGTTCCTTTAAACATTTCCTCT GACTCAGGTTCTTTCATTTTTCATTTTTTTTTTGTTCAGGGTCTGTTCTCCTGTACATGATCTTAATCAAAATTCTTACA AAAAAAACGATCTTAAATCAAAATATTCTCTGTTGTTTATGCATGTCTTGAGACTAACCAAAATTGTTATTGTCTTCTGA TCCTTTCTGTTGTGTGTGTATTATTAGCAAAACAGCAAATGCCTCATCCCACTAAGTGAGATAGGCTTATATGAATCACC CGACGCCACTGCGCTCAATGAAATAGCACAAATATGTTTTGATCCATAACTTGGACTGAACACCAACACAGAAGAGAAGA TGGCAGACTTGGAAAACATGCTTCTCGAGGCAGCTGGGAGGACCAGTTCTCCGGTGAGAAACCGCCAAAAGCTTGGAAAG TCAAGAATGAAAGACGGTGCGGCATTCTCTGATGGTGGAAGTAATTCCAGAGAGGAAGACTCTGATGATGGTGCTGGTGC TGTAAGCAAGAAACCACCAAGATGTGCATCTCATGTTCCATTGAAGAAGAGGTTGGACCTCAGCAGAAGAGGTAGTGTTG TATTTGAGTCTTTTCACTTTCTTAGCTATAATTCCCTAATTAGCAGTGGTAGCCTATTAGTCATGATGAGTGATGACTTA ATAGGTAATAATGACTTAATTGCTTTATGTATTGGTAAATGCTATTTTACTTTTGCTTTACAAGATCTTTCATATGGTAT AAGAGTTAGAAAGTAATTTTGATTGTAATGTGTAAAATTGTATATTCAGATGAAGTGGTAGGAGTATTTATACAATGAGC TAAGAAAGAAGGTTGAATAACTAACTTTCCCTCCATAAGTAACTATTTCTGTTATAGAAACTAACTTTCCAGCTAACTCT AATATATGGTTTATCAGTATGTTTATAATGGCTTGTAAGCTATCAATGAAATGTATGTAACATTCACTACTCCAGTTTGT ATTTTCCTCTCTTCACTTGAAAGTGTGTTTTCTTTATAGGTGGTCTCAATAATGATCATAGGAATCAGGGAGGAGGTGAT TTGGAAGGTGGACGTCCTGATAGGGAAGATGGAAGCAGTGAAGAATCTGATGTTGGCAGTGATCTTTACAAAAATGAAGA TGACAAGCAGAGGCTTGCAAAGATGACTGAACTTGAAAGAGAGATGATTTTGTCTGATAGAGCATCTAGAAAAGGTGAAA AGGAACTTAAGGAGAAAATAAAACTGAGGAGGGACAGCAATAATGCAACGGCAAAGACTACTACTACTAGATCACCTGTT GTCTCATCTGCTAAGGTTCGTTCATCAGCTAGAAATGCTGAGAGGACAGCTGCAAAGGACGATGTTCTAAGCGAATTGCG TGCGAAAAGGATGAAGCATCAGATCCTAGACACTCATGGTAAATCAGGCAATGCATCAGGAACAGTCTCAAGCAGCAAGG GAGTGAAGCCGAAACCCGAAAGCAGCTCGAGTCAGAGCGAGAGTGCCATGAGGTCTGACAGTGAAAGAGAATCTTCTGAT GATGGCGGATTGGCTGACAGCGATGATGACAAGAACATGCTTGAATCAGACATGCCAACATTTGAGAATGTTAAGGAAGT CACCGTCAGGAGGTCAAGGCTTGTGAAGTGGATGAATGAGCCGTTTTTCGAGGAGCTAATTGTTGGTTGTTTTGTGAGAA TTGGCATAGGAAGATCAGACAGTGGACCTGTTTACAGGCTCAGCATGGTGCAGAGAGTTGAATTGGGTGACCCTGCTAGA CCTTACAAGGTGGAAAATAAAGTCACTCATAAGTATCTGGTTTGTGTTTGGGGCAGTGAAAAATCAGCTGCAAAATTTCA GATGAGTGTAGTTTCAGAATCATCACCATTAGAGAAAGAGTTCAGACAGTGGCGAAGAGAAATTGAGAGAACTTGCAGCC TCATGCCTAGTAAGGTGAGCATATTGGAGAAGAAGGAGGCCATAAGAAGAACCAACACATATATTTACTCTGCAGCCACT GTGAAGCAGATGCTGGAGGAGAAAAAATCTGCTACATCAAGGCCACTGAACATTGCAGTGGAGAAGGATCGTTTGAAGAC GGAGTTAGAAGTAGCAAAATGCAAGAACGATCAGGTAGAGATGGATAGGATCTTCGCAAAGCTTGCGGAATTGGAAGCAT CGCGTCAAGCTCGGGAGAATGATTCAAAAGCAAAGAGGCTGGCTGAAATGAACAGGAAGAACAGGTTTGAGAACTTCAAA AGCTTGGCTGAGCATAGACATATGAATGCAAATTTAAAAGCTGGAGAAGGGTATGATCCATTTTCAAGGAGGTGGACGAG GTCGAGGAATTACTATAACTCGGAGCAAGAAAAAGAAAACAAAGAAGCTGAGGAGAATGAAGAAGGTAAAGGAGAAAAGG ATGAAATTGCAGGTGTAGTTAGTAGGGGGAAGGAAGGAGAACCTGTTACTGCAACTGTTGGTGTTGAAGACACAAAAGAA GCATTGCAAGCTGCTGCTAAGGCTGGGAAGTTGGTTGATACCTTTGCTCCAGTGGATGGGGGAACAGAATCACACACACT GCATGATTTTGACTTGGAAATTTCATTGGCTGAGCTTAAGAATTTTGGTGGAGCACAGGGGCTAAAGAATGCGTTTTTGG CAAGGAAACAGAAAATAGAAGCAACAATTGGTTGCCAGGTTCCTGAGAACGATGGGAGTAGGCATGCTCTTACATTAACT ATCAGTGACTACAAGAGAAGAAGAGGGCTTCTGTGAAGTTTGCAAGTTCAGTCTGATGGACATTTGTGTCATTAAGTGTG TTTGGAAAACCGGTTGGTCTTCACATTTAGCGGAGAAATGATTTTGGAAGAAGCTACTAAGGAGTAACTTTTTGTGAGGG AGAAGTGATTATGTTAGGATTATATTGAATCCAAACATGCTATAATACCAATTTTTAAGACAACTTCCAATAAGGCAAAA ATTTTATGGTCAACTGAATAACATAGACAGAGAATAAGCGTGTTTTTGGCATTCCAACAAACAAGACATTTCAAAGAGAA GAAAGATATCTTTCTCTTGTTTACTTGGCTTGTTTCTGATATTTTCAAGCTTTACCTCCTTTTCTATGCTGGTATATCTG TGTTCTGGTG
CDS sequence (LotjaGi1g1v0748600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCAGACTTGGAAAACATGCTTCTCGAGGCAGCTGGGAGGACCAGTTCTCCGGTGAGAAACCGCCAAAAGCTTGGAAA GTCAAGAATGAAAGACGGTGCGGCATTCTCTGATGGTGGAAGTAATTCCAGAGAGGAAGACTCTGATGATGGTGCTGGTG CTGTAAGCAAGAAACCACCAAGATGTGCATCTCATGTTCCATTGAAGAAGAGGTTGGACCTCAGCAGAAGAGGTGGTCTC AATAATGATCATAGGAATCAGGGAGGAGGTGATTTGGAAGGTGGACGTCCTGATAGGGAAGATGGAAGCAGTGAAGAATC TGATGTTGGCAGTGATCTTTACAAAAATGAAGATGACAAGCAGAGGCTTGCAAAGATGACTGAACTTGAAAGAGAGATGA TTTTGTCTGATAGAGCATCTAGAAAAGGTGAAAAGGAACTTAAGGAGAAAATAAAACTGAGGAGGGACAGCAATAATGCA ACGGCAAAGACTACTACTACTAGATCACCTGTTGTCTCATCTGCTAAGGTTCGTTCATCAGCTAGAAATGCTGAGAGGAC AGCTGCAAAGGACGATGTTCTAAGCGAATTGCGTGCGAAAAGGATGAAGCATCAGATCCTAGACACTCATGGTAAATCAG GCAATGCATCAGGAACAGTCTCAAGCAGCAAGGGAGTGAAGCCGAAACCCGAAAGCAGCTCGAGTCAGAGCGAGAGTGCC ATGAGGTCTGACAGTGAAAGAGAATCTTCTGATGATGGCGGATTGGCTGACAGCGATGATGACAAGAACATGCTTGAATC AGACATGCCAACATTTGAGAATGTTAAGGAAGTCACCGTCAGGAGGTCAAGGCTTGTGAAGTGGATGAATGAGCCGTTTT TCGAGGAGCTAATTGTTGGTTGTTTTGTGAGAATTGGCATAGGAAGATCAGACAGTGGACCTGTTTACAGGCTCAGCATG GTGCAGAGAGTTGAATTGGGTGACCCTGCTAGACCTTACAAGGTGGAAAATAAAGTCACTCATAAGTATCTGGTTTGTGT TTGGGGCAGTGAAAAATCAGCTGCAAAATTTCAGATGAGTGTAGTTTCAGAATCATCACCATTAGAGAAAGAGTTCAGAC AGTGGCGAAGAGAAATTGAGAGAACTTGCAGCCTCATGCCTAGTAAGGTGAGCATATTGGAGAAGAAGGAGGCCATAAGA AGAACCAACACATATATTTACTCTGCAGCCACTGTGAAGCAGATGCTGGAGGAGAAAAAATCTGCTACATCAAGGCCACT GAACATTGCAGTGGAGAAGGATCGTTTGAAGACGGAGTTAGAAGTAGCAAAATGCAAGAACGATCAGGTAGAGATGGATA GGATCTTCGCAAAGCTTGCGGAATTGGAAGCATCGCGTCAAGCTCGGGAGAATGATTCAAAAGCAAAGAGGCTGGCTGAA ATGAACAGGAAGAACAGGTTTGAGAACTTCAAAAGCTTGGCTGAGCATAGACATATGAATGCAAATTTAAAAGCTGGAGA AGGGTATGATCCATTTTCAAGGAGGTGGACGAGGTCGAGGAATTACTATAACTCGGAGCAAGAAAAAGAAAACAAAGAAG CTGAGGAGAATGAAGAAGGTAAAGGAGAAAAGGATGAAATTGCAGGTGTAGTTAGTAGGGGGAAGGAAGGAGAACCTGTT ACTGCAACTGTTGGTGTTGAAGACACAAAAGAAGCATTGCAAGCTGCTGCTAAGGCTGGGAAGTTGGTTGATACCTTTGC TCCAGTGGATGGGGGAACAGAATCACACACACTGCATGATTTTGACTTGGAAATTTCATTGGCTGAGCTTAAGAATTTTG GTGGAGCACAGGGGCTAAAGAATGCGTTTTTGGCAAGGAAACAGAAAATAGAAGCAACAATTGGTTGCCAGGTTCCTGAG AACGATGGGAGTAGGCATGCTCTTACATTAACTATCAGTGACTACAAGAGAAGAAGAGGGCTTCTGTGA
Protein sequence (LotjaGi1g1v0748600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MADLENMLLEAAGRTSSPVRNRQKLGKSRMKDGAAFSDGGSNSREEDSDDGAGAVSKKPPRCASHVPLKKRLDLSRRGGL NNDHRNQGGGDLEGGRPDREDGSSEESDVGSDLYKNEDDKQRLAKMTELEREMILSDRASRKGEKELKEKIKLRRDSNNA TAKTTTTRSPVVSSAKVRSSARNAERTAAKDDVLSELRAKRMKHQILDTHGKSGNASGTVSSSKGVKPKPESSSSQSESA MRSDSERESSDDGGLADSDDDKNMLESDMPTFENVKEVTVRRSRLVKWMNEPFFEELIVGCFVRIGIGRSDSGPVYRLSM VQRVELGDPARPYKVENKVTHKYLVCVWGSEKSAAKFQMSVVSESSPLEKEFRQWRREIERTCSLMPSKVSILEKKEAIR RTNTYIYSAATVKQMLEEKKSATSRPLNIAVEKDRLKTELEVAKCKNDQVEMDRIFAKLAELEASRQARENDSKAKRLAE MNRKNRFENFKSLAEHRHMNANLKAGEGYDPFSRRWTRSRNYYNSEQEKENKEAEENEEGKGEKDEIAGVVSRGKEGEPV TATVGVEDTKEALQAAAKAGKLVDTFAPVDGGTESHTLHDFDLEISLAELKNFGGAQGLKNAFLARKQKIEATIGCQVPE NDGSRHALTLTISDYKRRRGLL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 122 | 122 | - | – | |
| PANTHER | 1 | 662 | 662 | 0.0 | – | |
| PANTHER | 1 | 662 | 662 | 0.0 | – | |
| MobiDBLite | 66 | 80 | 15 | - | – | |
| MobiDBLite | 89 | 122 | 34 | - | – | |
| MobiDBLite | 134 | 157 | 24 | - | – | |
| MobiDBLite | 134 | 270 | 137 | - | – | |
| MobiDBLite | 158 | 181 | 24 | - | – | |
| MobiDBLite | 183 | 208 | 26 | - | – | |
| MobiDBLite | 210 | 240 | 31 | - | – | |
| MobiDBLite | 241 | 267 | 27 | - | – | |
| Gene3D | 269 | 403 | 135 | 4.7E-37 | ||
| SMART | 269 | 381 | 113 | 4.3E-41 | ||
| ProSiteProfiles | 269 | 404 | 136 | 34.608 | ||
| SUPERFAMILY | 271 | 400 | 130 | 4.05E-30 | ||
| Pfam | 274 | 379 | 106 | 5.6E-29 | ||
| Coils | 433 | 453 | 21 | - | – | |
| MobiDBLite | 523 | 566 | 44 | - | – | |
| MobiDBLite | 523 | 552 | 30 | - | – | |
| Coils | 524 | 544 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). |
Expression pattern of LotjaGi1g1v0748600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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