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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0754100 |
| Transcript ID | LotjaGi1g1v0754100.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Auxin-responsive protein; TAIR: AT3G62100.1 indole-3-acetic acid inducible 30; Swiss-Prot: sp|Q9M1R4|IAA30_ARATH Auxin-responsive protein IAA30; TrEMBL-Plants: tr|I1JQX8|I1JQX8_SOYBN Auxin-induced protein; Found in the gene: LotjaGi1g1v0754100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:132711336..132715151) extracted from Lotus japonicus Gifu genome v1.2.
GGCGGCTTGATCTGTCATCTAGCAAAGTTCCAAAATGGGAAAAGCCACTAGTTCTTCCTCTTCTTCAATTAGCAGCACCA ACAACCCCCGCTTTGTTCTTTCAACTGCATCCTCTCTCACACAATTCAACACACAAGAACTTCCCACAGATCTTAGGCTT GGACCAAGCATTTCAGCCTCTATGTTAAGGTTTGTGCTCAAAATCAGCTTCTGTTTCCTCATAATCAACTCAGAAACCCC ATGACTATTTCCATAAGCTTCTCTCAAGAATTGATTTTGGCTTTAGAATTTTTTCTAATATGATTTCCAAATTTGTGTTA ATATTATGAAGATCCTTAATGACTCTTCTATATTTATATCAAATGTGTTGATCTATGTCATTCTTTAATTTTTGTAGGGG GCAATGGCAACCAAACCACCCATCTGGGAGAAACTCACAAGGTGCTGAAGTAAATGATTGCAGTGATAGCAGCTTCTTTG TGAAGGTGTACATGGAAGGCATTCCAATTGGCAGAAAACTCAATATACTAGCTCATGGTGGTTACTATGAGTTAGTAAAG ACTCTTGAGAACATGTTTGACACTACCATTCTATGTAAACTCTATTGCTATACTCTTACATTGTATGATTTTGTTTCGAC ATTAGTGAAATGACATTGGAAATTGAATCTTTTGATCAGGGGGAACAGAGATGGATGGAGTTCAACCAGAGAGATGCCAT GTGCTAACTTATGAAGATGAAGAAGGGGATTTGGTCATGGTTGGGGATGTCCCTTGGGAGTAAGTTAACTCTCTCTATCT TTGAGGAGCACATTGTATATAGATATATATCTTCTATTTTATGCATTAATGTATTTTCTCTTTTGGTTGTGTAGGATGTT TTTATCCACTGTAAAGAGGTTGAAGATCACCAGGGTAGACACATTCGGGTGTTGAAGATCACCATGGTTTCAAATTTTGT TCTCTTAGAGTGAGATTCAATAGTATGGTCACTGATCTGAAAATTTAGAAAATCTTAGCTGAAGTCTGCAGAAAGTTATA GATGTATATGATGCATAGCTCACTCTGATCTTTCTTTGAAGAAAATGGAAAAGAATAGTGTTGTACATTATTTCCTCTTT TGAGCTATTGAGCTACTAGCATTACTTTCATTCTAGAAGTAAGCTTCTAACCATTAACTAGTCTTTCTCTTTGTTTGCCT ACTTACATGGTGTTTGGATATGTATTGGACACAATTAAACTTCAAAACACGTTAGGTAAGAAGCTACATATTCTAATTCT AACAAATAGATTAAAATGATTTTATAGTCTAAACTTGAATTCCAGATGTGCAAACTCAAATTCTGAAATGTATGTACAAA ACTGGTAGTCTACCTTTCAGCTTGGTCCCTTACCTGTAGCCACAGGAAGGTGAGGGAAATTTATTCAAATGACAAGAAAC AACGAATATGATTCTTTTTACTTTTGAGAGTATCTACCAGCAATGAGGAATGTGCAGGCAATAGTGGTAGTCTTCTCTAA AAAAAAAGTGGAAATGTATGCATTAACTTGGTCCCTTGGTGGAAGTTTTGAACCAGGGAGAGGGAGGAGAAGCTCAATGC CATCAAACTGAGAAAAGTTATTTGGGAGCGTCAGAAGAATCAAGGGCATGATGATTTTCAGGTGAAGCTGGTTGTGATTT TAATCTGATCTCACGTTGATACTCATCTGCTGCAATCTGGTAAAAATCATCAATGCCATATGTGGTTGGTCCTGCTTCAT CATTCACACACAACACAAGAGATGCTCAATTGCTGATTAAAGTACATGGTACATGCTTCATATACATCTTTTGATTGCTT ACCTCATTTACTCTTCATGGAGGGATCTACAATTGCTGATTAAAGCATCTACAATTGTTTCTCTATGAGAACATATTGTA GATGCTTTCAAAAGACAGCAAAAATTAAATAAACAGACAGCAACTAAGATAGGATATAACAACCCTCTTTCAATATTGGA ATGCAATTTAGTTTAAGAAGGTTTCTACGAATCACCCTAACAAGTAAAAGGATTTATTTTTCAAAATTTTCACAGTTGAT AATATTGAGAGCAATGAGGGATCATCTGTACAACTTTAATGAGCCTATCTACATTACATTACACTTCCAAGATGTAAAGA AATGCTATTAATTTAGTCCTCAGGCATATATCTAAGTCTTTTTTTTATAAGCCAAGGCATTGCATTCAAAACAGCACAAG GGGTTCTAACCCGAATACAATGAGAAAAAGAAGACTAGTCAAAAAAGGACTAGAACTTGAGAAAGCAGAAGATACATGAG AGCATGAAATAGGAAAAAGATGAGAAACCAGAAAGAATGCCAAAGAAATGACAACCAATCCCTTCATGGAAGTATCATGC ATAAGTCTTTTATATGATCACACTTAAAGAAACGATCTCTAAAAGATTGCAAATGAAAATTATTTATCCTGTTTTCCCTC TATTCACTCCTTTAGGCCATGTTTGGATTGATATTAGGAGTGGAATGAGATGGAAAGGGAGTGTTATTATGTTCCATTAG TTGATTTTGTTAATGATGGAATTAGATGTAATGTGATGAAATTCATTCCATCACGTTCCATTACTTACCATCAATTTTCA TACCCTCAATTTGGATGAAAGGCAATGAATAGAAACACTAAAAATTAGTAGTGTTTTAAAAATAAAGGTATAGTATAGTA ATAAAAAAAATGTTCAATTCAACACAAAGAAAATCGTAAATTTGTTATGCTTCACCATAAAATATTCAAACAAAGTGAAA ACATTTTTATTCTATTCCATCATATTTCATTCTTTCCATAAATCAAAATGTATCCCCTAAACTATTGCATACCACAAATA ATTACTTAATGTTGGAGCATTTTATTTAATAATAATAATAATAACATGCATGAAACACTCTTATGGATAATGCACAACTA TTGAAATTATAATGTAATTCCATTCCATATTGTATTTATCGGTTGCTTGCACAGCAAGCTAAACCTTGTTCATAGAGTTT GTTAGTCTTAACTAGTGTTAGTTAGCACAGGTTAGAGTTAGTTACTTAACTTTACCATAGTTAGGCTTTAGTATATAATT TACTCTTTTCTATACTGCCATCTGCATGCCTCTTGTGTTGATACGCGCCAATCAGTCACATGATTTAACATTTTCTATGG TTCTTCCCTGATTAGCTGACATTCTAAGAAGCAGAGTACGATCTCTCGTTCATCTTCAGAAGCAGAATATCGTACCCTTG CTTCCACAAAATGGCTTCTCTATTTGCTTCAAGATTTGCATCATCCTTTGTCAGGTCTCGTGACCATTCATTGTGACAAT CTTTCTGCCATACACATTGCACAAAATCCAACATTCCATGAGCGCAAAGATCAGCTGGCAGATCTTCACACCAAGGCTCT TCATCCAGCTCCATTTAGACACTTATTGTACTGAGTCTCAAGGATCTATATGTCTCAGTTTGAGGGATATTGATTCTTGG CTAGAACAGTTTCCAAGACCAACATACTAGTTGTTGAAGGGTATCTATTTGAACTTCCTGACATTATGAGAGCAATAATG CAAGCATGCAAGAAAGCTAGGAGTAATGGTGTCTTGGTCGCAATAACAACTTCAGATGTATCCTGCATTGAGAGACATTT TGATCATTTCTGGTACAGCAAGCTAAACCTTGTTCATAGAGTTTGTTAGTCTTAACTAGTGTTTGTTAGCTCAGGTTAAG AGTTAGTTAGAGGGAGCCATAGTTAGACTTTAGTATATAATGTACTCTTTTCTTCA
CDS sequence (LotjaGi1g1v0754100.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGAAAAGCCACTAGTTCTTCCTCTTCTTCAATTAGCAGCACCAACAACCCCCGCTTTGTTCTTTCAACTGCATCCTC TCTCACACAATTCAACACACAAGAACTTCCCACAGATCTTAGGCTTGGACCAAGCATTTCAGCCTCTATGTTAAGGGGGC AATGGCAACCAAACCACCCATCTGGGAGAAACTCACAAGGTGCTGAAGTAAATGATTGCAGTGATAGCAGCTTCTTTGTG AAGGTGTACATGGAAGGCATTCCAATTGGCAGAAAACTCAATATACTAGCTCATGGTGGTTACTATGAGTTAGTAAAGAC TCTTGAGAACATGTTTGACACTACCATTCTATGGGGAACAGAGATGGATGGAGTTCAACCAGAGAGATGCCATGTGCTAA CTTATGAAGATGAAGAAGGGGATTTGGTCATGGTTGGGGATGTCCCTTGGGAGTAA
Protein sequence (LotjaGi1g1v0754100.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGKATSSSSSSISSTNNPRFVLSTASSLTQFNTQELPTDLRLGPSISASMLRGQWQPNHPSGRNSQGAEVNDCSDSSFFV KVYMEGIPIGRKLNILAHGGYYELVKTLENMFDTTILWGTEMDGVQPERCHVLTYEDEEGDLVMVGDVPWE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 5 | 151 | 147 | 1.3E-69 | – | |
| PANTHER | 5 | 151 | 147 | 1.3E-69 | ||
| MobiDBLite | 51 | 70 | 20 | - | – | |
| Pfam | 66 | 151 | 86 | 3.9E-20 | ||
| SUPERFAMILY | 71 | 151 | 81 | 1.32E-12 | – | |
| Gene3D | 71 | 151 | 81 | 1.0E-24 | – | |
| ProSiteProfiles | 77 | 151 | 75 | 22.654 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Cellular component | Nucleus | A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. |
Expression pattern of LotjaGi1g1v0754100.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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