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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0756800 |
| Transcript ID | LotjaGi1g1v0756800.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Ribosome biogenesis protein BMS1; TAIR: AT1G06720.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein; Swiss-Prot: sp|Q14692|BMS1_HUMAN Ribosome biogenesis protein BMS1 homolog; TrEMBL-Plants: tr|I1LQB2|I1LQB2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0756800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:133010154..133013022) extracted from Lotus japonicus Gifu genome v1.2.
TTTTGTTTTCTGTGTGACTTGACTAATCAAATTGCAAACAAGTTGTTAGTTGCATTACTTCAGTATGTTAGTTACCTTAA TTTTGATCCACATTTGATGATGACCCTGGGACACCAGAGGAAGATGGTGGTAATGAAAATGAAGCCAAGTTTCGTCGAGG TCAGCCTAATGAAACCAGCTACTTTGACAAGGTACAACTTGTTGCTTGCATTTAGTGTAAACTACCGTTTTATAGAATGG CTACTAATTCGTGTGTTTTGCCAGTTGAAGGAGGAGATAGAACTCCAGAAACAAATGAATATTGCTGAACTCAACGATCT TGATGAGGCTACCAGATTGGAGATAGAGGGTTTCCGAACAGGGACATACGTAAGATTGGAGGTCCATGACGTTCCTTGCG AGATGGTTGAATACTTTGATCCCTACCATCCAATATTGATTGGAGGAGTCGGTTTAGGGGAGGAAAATGTTGGATACATG CAGGTCAGTAGTAGGCTTTTCTAAAGCATAGCTCCTCCTCATAGAGTTTGTGGTAACAATTGTTAGAAAATTTTAGTCAA GAAAATTATTGATATATGCCAAAGATGTCTATGATTAAGGACACTATCATAAGGGAAATTTGTGTTGATCCAGTCAGTGG TTGGGTTTTCTAATTGGTCATTTGTTTAGTGATACAATTTCAAGTCTAAAAGATATGTCACTATATTTGGTAGTAGATGA TCAAAATGAATATCCTGTAATTAGGTTTGGAATAGAGCTTGATGGTTTGGGTAGGGGTTCCTTTTGTTGTTCCAGGAAAA TAATAACTTGTCTTTATTTTATGGATGTTGGCATGGGCCATCTGTATGGAAGGTAAGGAACATAATGAGTTGTTTGTATA GAAGATGAAAAGTTGGTTTCTAGAACATGTAATGAATTGTTAATAATATTATTAAGTTTAATGAGTTGATGAAACTTTCT TATGTTTCCCCTTTCTTTTAAATTCATCTGTTCCCCCCCCTCCCCCCCCCCCCCCCCCTCTTTCCTCTTTCTGCTTTTCC AATCTTTTTTTCGCTTTCTCTTACCTTCCAGGCCAGGTTAAAGCGACACAGGTGGCATAAGAAAGTCCTGAAGACTAGAG ACCCAATTATTGTTTCTGCTGGATGGAGGCGTTACCAGACAACTCCTGTTTATGCTATTGAGGATCACAATGGAAGGCAC CGTATGCTGAAATACACTCCAGAACACATGCATTGCCTAGCTATGTTTTATGGTCCTCTTGCTCCTCCCAACACCGGAAT AGTCGCTGTTCAGAATTTATCAAACAATCAGGTCGGGTTGTTTCTCTTGTTGAATAGATTTTGTTAAAGTCCTCTCAAAA TGTGCACTCTATTTTTGTACCTTTATTCTTTTTTTTTCCCCCTCTAGTATTTGTGTTTAGTGTCTGAAATGTTGTATTTG ATTTATCAGGCAACATTTAGGATTACTGCAACTGCAGTTGTACTTGAGTTTAATCATGCAGCAAGGATAGTGAAAAAAAT AAAATTGGTCGGTTACCCATGCAAGATATTCAAGAAGACAGCTCTAATCAAGGAAATGTTTACTTCGGATCTTGAAATAG CTCGGTTTGAAGGTGCGGCCATTCGAACAGTCAGTGGGATAAGGGGGCAGGTCAAGAAGGTATCTGAGTTGTCACTTGAA GACAATCACATTACTGATTATTTGTCCCATTAGTTAACTAAAAGACAACTAATGTTTCAGTTGGATAGTTAAATTTTGTA ATCTATTTTGTGCTGAGTTATTTTTAATTTGGCAGGCTGCAAAAGAAGAGATAGGTAACCAACCAAAAAGGAAGGGTGGG ATAACCAAAGAAGGAATTGCTAGGTGCACCTTTGAGGACAAAATTTTGATGAGTGACATTGTTTTCCTGCGTGCATGGAC TCAAGTTGAAGTTCCTCAGTTCTATAATCCATTGACAACGGCATTGCAGCCTCGTGACCAGACCTGGAAAGGAATGAGAA CTGTTGCAGAATTGAGAAGAGACCACGATCTTCCTGTGCCTGTAAACAAAGATTCTCTTTACAAGGTATGTTCCAATTTG ATACCCGTAGGTCCCCCCCCCCACCCCCTCTTGGCGCTTTAGATATTTTTCTCCTCCCATATGGTTGTGTCTGTACTTAT TTTCCTTTTTCTTTGTCCTTGGCAGAAAATTGAAAGAAAACCTAGAAAGTTCAATCCATTGGTGGTTCCTAGGAGTCTAC AGGAAAGACTTCCTTTCGCATCCAAACCCAAGGAGACACCCAAGCGAAACCAGCCATTACTTGAACAGAGAAGGCAAAAG GGTGTTGTCATGGAACCTCGCGAGCGAAAAGTTCTTGCTCTTGTTCAGCACATCCAGTTAATAAATCATGACAAGGTAAG CATGTCGTCTAATTGATTTTTGCTGGCCTTTTCTTATTTGAAATTTCTATCCGAGATTTCTTAGCTGATAGTGAAAAGAA TTAGGGGACCATATTCCATTGCAAATAAGTATTTCAGCCACTTTATGGATGTTTTTTTTTTATATTCAAAGTTGAGGATG ACTGGCAACACAGTAAATTTGGCACAGTATTTTACTCAATTATGACTGGGAACACATTTTTATGATGCTCTCAATTATTA TTATTTTTCTCATTTTAAAGTTCTATCTGGCATGCCTTTTGACATTGTTTTTCCTACGAGCTTGTAGATGAAAAAGCGAA AACTTAAGGAAAACGAAAAGAGGAAAGCACATGAAGCAGAAAAAGCAAAAGAAGAGCAGTTATCGAAAAAGCGCCGTAGA GAGGAAAGACGAGAGAAGTACCGAACACAAGACAAGTCGAGTAAGAAAATGCGGAGATCAGAGGCTTGA
CDS sequence (LotjaGi1g1v0756800.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAATATTGCTGAACTCAACGATCTTGATGAGGCTACCAGATTGGAGATAGAGGGTTTCCGAACAGGGACATACGTAAG ATTGGAGGTCCATGACGTTCCTTGCGAGATGGTTGAATACTTTGATCCCTACCATCCAATATTGATTGGAGGAGTCGGTT TAGGGGAGGAAAATGTTGGATACATGCAGGCCAGGTTAAAGCGACACAGGTGGCATAAGAAAGTCCTGAAGACTAGAGAC CCAATTATTGTTTCTGCTGGATGGAGGCGTTACCAGACAACTCCTGTTTATGCTATTGAGGATCACAATGGAAGGCACCG TATGCTGAAATACACTCCAGAACACATGCATTGCCTAGCTATGTTTTATGGTCCTCTTGCTCCTCCCAACACCGGAATAG TCGCTGTTCAGAATTTATCAAACAATCAGGCAACATTTAGGATTACTGCAACTGCAGTTGTACTTGAGTTTAATCATGCA GCAAGGATAGTGAAAAAAATAAAATTGGTCGGTTACCCATGCAAGATATTCAAGAAGACAGCTCTAATCAAGGAAATGTT TACTTCGGATCTTGAAATAGCTCGGTTTGAAGGTGCGGCCATTCGAACAGTCAGTGGGATAAGGGGGCAGGTCAAGAAGG CTGCAAAAGAAGAGATAGGTAACCAACCAAAAAGGAAGGGTGGGATAACCAAAGAAGGAATTGCTAGGTGCACCTTTGAG GACAAAATTTTGATGAGTGACATTGTTTTCCTGCGTGCATGGACTCAAGTTGAAGTTCCTCAGTTCTATAATCCATTGAC AACGGCATTGCAGCCTCGTGACCAGACCTGGAAAGGAATGAGAACTGTTGCAGAATTGAGAAGAGACCACGATCTTCCTG TGCCTGTAAACAAAGATTCTCTTTACAAGAAAATTGAAAGAAAACCTAGAAAGTTCAATCCATTGGTGGTTCCTAGGAGT CTACAGGAAAGACTTCCTTTCGCATCCAAACCCAAGGAGACACCCAAGCGAAACCAGCCATTACTTGAACAGAGAAGGCA AAAGGGTGTTGTCATGGAACCTCGCGAGCGAAAAGTTCTTGCTCTTGTTCAGCACATCCAGTTAATAAATCATGACAAGA TGAAAAAGCGAAAACTTAAGGAAAACGAAAAGAGGAAAGCACATGAAGCAGAAAAAGCAAAAGAAGAGCAGTTATCGAAA AAGCGCCGTAGAGAGGAAAGACGAGAGAAGTACCGAACACAAGACAAGTCGAGTAAGAAAATGCGGAGATCAGAGGCTTG A
Protein sequence (LotjaGi1g1v0756800.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MNIAELNDLDEATRLEIEGFRTGTYVRLEVHDVPCEMVEYFDPYHPILIGGVGLGEENVGYMQARLKRHRWHKKVLKTRD PIIVSAGWRRYQTTPVYAIEDHNGRHRMLKYTPEHMHCLAMFYGPLAPPNTGIVAVQNLSNNQATFRITATAVVLEFNHA ARIVKKIKLVGYPCKIFKKTALIKEMFTSDLEIARFEGAAIRTVSGIRGQVKKAAKEEIGNQPKRKGGITKEGIARCTFE DKILMSDIVFLRAWTQVEVPQFYNPLTTALQPRDQTWKGMRTVAELRRDHDLPVPVNKDSLYKKIERKPRKFNPLVVPRS LQERLPFASKPKETPKRNQPLLEQRRQKGVVMEPRERKVLALVQHIQLINHDKMKKRKLKENEKRKAHEAEKAKEEQLSK KRRREERREKYRTQDKSSKKMRRSEA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 420 | 420 | 3.2E-216 | – | |
| SMART | 1 | 257 | 257 | 9.8E-113 | ||
| PANTHER | 1 | 420 | 420 | 3.2E-216 | ||
| Pfam | 16 | 258 | 243 | 3.0E-83 | ||
| MobiDBLite | 323 | 350 | 28 | - | – | |
| MobiDBLite | 336 | 350 | 15 | - | – | |
| Coils | 371 | 408 | 38 | - | – | |
| MobiDBLite | 373 | 426 | 54 | - | – | |
| MobiDBLite | 383 | 426 | 44 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Ribosome biogenesis | A cellular process that results in the biosynthesis of constituent macromolecules, assembly, and arrangement of constituent parts of ribosome subunits; includes transport to the sites of protein synthesis. |
Expression pattern of LotjaGi1g1v0756800.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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