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Field | Value |
---|---|
Gene ID | LotjaGi1g1v0759300 |
Transcript ID | LotjaGi1g1v0759300.1 |
Lotus japonicus genome version | Gifu v1.2 |
Description | DELLA 1; TAIR: AT2G01570.1 GRAS family transcription factor family protein; Swiss-Prot: sp|Q8S4W7|GAI1_VITVI DELLA protein GAI1; TrEMBL-Plants: tr|A0A151RYG0|A0A151RYG0_CAJCA DELLA protein RGL1; Found in the gene: LotjaGi1g1v0759300 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:133251009..133254512) extracted from Lotus japonicus Gifu genome v1.2.
CTCTATTGTATGTTCTACCTAGATCTAGAACAATGGCGATCCATAAAATTTCAACATAACAATCCGGTGTATTTTAATTT TAAATGAATGTGTTGTAATCCATCTAATAAATAAATGGATGGATTATTTACATTATTTTCTTTTGAAGATGGATTGGATT GAATTTTCTTATTGATGAGCTCGATGAATATGGCTTCATGGATTATTTTATAATGAAAGGATGAAATAGACAAGCAACCA GTATTTGATCTTCCACCCTTAATTAAGCAACCTCATGATATTGCTATGATTGTATTCATTTCATCCCCATTTCTTAATTT TTCTCATACATTACCATATTACAATACATCTATACCTTTGTACAAACAAGTTCTATGCATATGCCACCATCTTTAGCTTC CTTAGAGCTCCTGAGAAGCTATGGTAGCAGGTTCAAGATGCAAAATACAAGCACCTTAAGCAAAGGTAAAACTTGTTTAG CTCATCAGAAGATGTCAACTGTAGAAATAGTAAGAGAAGCTGGAGCAAGGTATGTCCAATACTCTTCCCATTGGAATGAT AATTTTTGCATCCCTATGCACCCTTATGGATTGAAGTACCTTGGGAATTTGTCTGAGGAAGAAAATGGAGATGTTGAACA GGTTCAGTTTCTCCTTGCTGCAGCTGAAAGGGTACGCTGCCAACAATTTGAACGTGCAAGCAGGTTACTCCTCCAATATC AATGGAATTCATCATCATATGCAAGTGGAAACACTGTTCAAAGAGTTGTCTTTCACTTCGCTGAAGCACTTAAAGAGAGA ATAGACCGAGAAACAGGAAGGATTACAAGGGGTCTGAGAAAAATGAAGAAATGGAATTAATTCAGAAGATGGGTGGTACC AACAAATCCCTTCTATGCCATCAAAAAATTCCTTTCAATCAAGTAATGCAATTCACTGGGGTACAAGCTATGGTGGAACA TGTTGCAGGTGAGACTAAAATCCATCTAATAGATCTTGATATAAAATGTGGGGTGCAGTGCATAGCTTTGATGCAAGCAC TCGCTGAGCGCCAGAATAGCATGGTAAAAGTAAAATTCTTTAAGATAAGTGCCATTGGACTTACAGCATGCAAAACCAAG ATAGAGGACACTGGAAAACGGTTAGCGAGTTTTGCTGAGTCCTTGAACTTGCCCTTTTCATATAAGCATATTCTAGTCAC AGACATGGCAGAATTCAAAGATCATTTTGAAGTTGAAGAGGATGAAGCTGTGATTATTTACTCTGCATATTTTCTAAGGA CCATGATATCAAGGCCTGATTGTTTGGAAAACTTGATGCGGATTATTAGAAATATCAAACCATCTATAATGATAGTGCTT GAAGTGGAAGCAAACCATAATTCACCCTCCTTTGGGAATCGTTTCATTGAGGCAATGTTCTACTACTCGGCTTTTTTGGA TTGCTTATATACTTGCATAGAAGATGATGAGTGCAGAGTATTCACTGAAGCAATATTATCTGCAGGGATAAGAAACATTG TTGCTATGGAAGGAAGGGAAAGGAGGGTTAGAAATGTGAAGATAGATGTTTGGAGAAGGTTCTTTGCAAGGTACAGAATG GTGGAAATTGAATTTAGTGAGTCATCTATGTACCAAGCTGATTTGGTTGCTAGAGAGTTTGCTGTTGGGAAGTTCTGCAC TGTAGACAAGAATGGCAGGTCTATGATAGTGGGATGGAAGGGGACCCCAATGCATTCAATCTCAGCTTGGAGGTTTCTTT GACAAAATTATGGCCCATTTGGAAGAGATCATTAGATTTGGCACCCCACTCATTAGAAATGTCACCCCACTTACGGAAAC TTAGTTTCCGAAATATTTCAAAAATAAAGTTTCCGAAGCATTTTTTCACTCAAAAGTGGGGTGTTACATGTATTTTGCAC TACAAATCACGAATTAATTTCGGAATCTAAGATTCCGAAATAATTCGGAACTTGAAAATCCGAAAATTGGTAGTGTGAAA TCTATTGGTTGGGGTGGCAAATCCAGCTCTCTTTGGAAGAGCTTATTTGAGATTATTTTATAGCATAAAGTGATAAACAT TTATTCAAGTGTTTGAGATAGCCTATAACATACATATAAGTTGTTTTGTGCTTATTTTCATAAGTTGTTTAGATTAACTT ATGAATAAGAGTTTATGCTTATCTGTCATTAGAACTTATCCTTAGTAGCACCTCGTTTGTACGCCAATTTGTGTTGAGGT TCTTTTACAAGCAGTCCTCTTATAAGATCCCTTGCTGCGAAACTGACAACAGGTGCTTCGGGAAATCGCAGGGGCTGGCC TACGACGTTAAACAACGTCGCTCGGTTCCCAGATCCTTTAAAAGGAGTTTTAACAAACAACAGTTCGTATAGAAAGATTC CAAAAGTCCACCAATCAACTGCACTCCCATGACCTTCACCCTCAATGAACTCTCAAAGGAAATTGCAACCATGAAAGCAT CCATTGAACAATTGAAGCTTGCCTCTTCACAAGCACAAAAAGATCAAGCAAATGCCATGAGAGAAAGAGAGGAGAAACTA AGTTATTACAAAACAGCCAAGGAAGAAACAGAGTTGAAATTAGTGGCTTTAAAGAAGGAGTATGACCCTGAACTAATACC AAATCTGGAAGCCAAACTTGCTGAATTCAAGAGCAGATGAAAGAAGCTCATGATTCTGAGATGGATTCTGTGAAACTAAT AACTCTGGAGATTAAAGAAGCCAAAGAGATACTGCAGCAAGTTTCTGAAGAAGAAACTTCCCTGAGAAACCTTGTAGCTT CACTTAAGGCAGAATTAGAACAAGTGAAGAAAGAGCAAGAGGGACTGAGAGAGAAGGAAAAAGAAGCAGAAGCTCTTGCT GCTAACTTAACTGGTGAAATACAAAGCAACAAGGAAGAGACAGAATCTATGGAGAACAAAGATTCTAATGCTTTTAATGA GACAAACTTGAAAATTGAGCAGCTTTCACTTGAGACAGAAAATGCAAGAAGAGAAGAAGAAGAAATGAGAGCAAAAGCTC AAGAGCTGAAACAAGAAGCTGAAAGTTCGCGAGCTGTAGCTGAAGAAATGGAGCAGGAACTAGAGCTTTTCTTGAAAGAA GCCGAAGAAGCGAAAGTGGCAGAACAAAAAGCCATTGAGGAGATGAAAATGCTGTCTGACGCACAAGGTGGAAGAGTCTC AGTTTCAGACAAAACAAACCATTGGAAATATGTTTACAGACTCTAATTAAGGCTAAAGGTACAAAATAATCAAGAAGTAC TTATTCTAATAGGGTAATAGATTCCTTTTTAAGCACAGCAAAGCTAATATAGACAAGATGGTCAGCATATGTGGTAGATG GAAAGGTTAAGACTCTTAATGTTGAAGAAGCTCCATCTGATGTCAAGGTTTCTGGCGCAGACACAATTTTGGGACAGATT TGAAGTTTCTGTTTGTATGCTTGTAGTAAGTTACCCATAATCAATAAAATGTACCTGATGCTTC
CDS sequence (LotjaGi1g1v0759300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAATTAATTCAGAAGATGGGTGGTACCAACAAATCCCTTCTATGCCATCAAAAAATTCCTTTCAATCAAGTAATGCA ATTCACTGGGGTACAAGCTATGGTGGAACATGTTGCAGGTGAGACTAAAATCCATCTAATAGATCTTGATATAAAATGTG GGGTGCAGTGCATAGCTTTGATGCAAGCACTCGCTGAGCGCCAGAATAGCATGGTAAAAGTAAAATTCTTTAAGATAAGT GCCATTGGACTTACAGCATGCAAAACCAAGATAGAGGACACTGGAAAACGGTTAGCGAGTTTTGCTGAGTCCTTGAACTT GCCCTTTTCATATAAGCATATTCTAGTCACAGACATGGCAGAATTCAAAGATCATTTTGAAGTTGAAGAGGATGAAGCTG TGATTATTTACTCTGCATATTTTCTAAGGACCATGATATCAAGGCCTGATTGTTTGGAAAACTTGATGCGGATTATTAGA AATATCAAACCATCTATAATGATAGTGCTTGAAGTGGAAGCAAACCATAATTCACCCTCCTTTGGGAATCGTTTCATTGA GGCAATGTTCTACTACTCGGCTTTTTTGGATTGCTTATATACTTGCATAGAAGATGATGAGTGCAGAGTATTCACTGAAG CAATATTATCTGCAGGGATAAGAAACATTGTTGCTATGGAAGGAAGGGAAAGGAGGGTTAGAAATGTGAAGATAGATGTT TGGAGAAGGTTCTTTGCAAGGTACAGAATGGTGGAAATTGAATTTAGTGAGTCATCTATGTACCAAGCTGATTTGGTTGC TAGAGAGTTTGCTGTTGGGAAGTTCTGCACTGTAGACAAGAATGGCAGGTCTATGATAGTGGGATGGAAGGGGACCCCAA TGCATTCAATCTCAGCTTGGAGGTTTCTTTGA
Protein sequence (LotjaGi1g1v0759300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MELIQKMGGTNKSLLCHQKIPFNQVMQFTGVQAMVEHVAGETKIHLIDLDIKCGVQCIALMQALAERQNSMVKVKFFKIS AIGLTACKTKIEDTGKRLASFAESLNLPFSYKHILVTDMAEFKDHFEVEEDEAVIIYSAYFLRTMISRPDCLENLMRIIR NIKPSIMIVLEVEANHNSPSFGNRFIEAMFYYSAFLDCLYTCIEDDECRVFTEAILSAGIRNIVAMEGRERRVRNVKIDV WRRFFARYRMVEIEFSESSMYQADLVAREFAVGKFCTVDKNGRSMIVGWKGTPMHSISAWRFL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
ProSiteProfiles | 1 | 301 | 301 | 47.48 | ||
PANTHER | 9 | 301 | 293 | 1.5E-135 | – | |
PANTHER | 9 | 301 | 293 | 1.5E-135 | – | |
Pfam | 18 | 301 | 284 | 4.4E-66 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0759300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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