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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0759400 |
| Transcript ID | LotjaGi1g1v0759400.2 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | F-box protein interaction domain protein; TAIR: AT1G33530.1 F-box family protein; Swiss-Prot: sp|Q9C800|FB34_ARATH Putative F-box protein At1g33530; TrEMBL-Plants: tr|A0A072UAB3|A0A072UAB3_MEDTR F-box protein interaction domain protein; Found in the gene: LotjaGi1g1v0759400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:133254573..133262407) extracted from Lotus japonicus Gifu genome v1.2.
TAAAAAAACATTGGGCTGTTGCAGGCCCATGCGTGCTGAACAAAAGAAAATCTTAACATTACATTGTTGCAGATCTGATC TGAGGATCAAATCTTTCAAATAAAAATAAAAATCTAGTCTGAGGAGGGAGGATTTAGGGTTGGTATTTGGGAACACGATT GATTCACTTTTCTTGTCTTCTCCAATCTGACATGGAAATCGAGTTTGTTTTGCCTTTCGAATTGTGGATTGAAATTTTAT CTTGGCTTCCTGTGAAGACCCTGATGCGATTCAGTTGTGTTTCCAAGTCATGGAAATCACTCATCTATCAAGACAGAGAC TTCAAGAAACTTCACTTGGACAGATCACCTAAAAACAACAATCAAGTAATCCTCACCTTACAAAAACCACTCTTCTCTGG CCGCACCTTCTTCCCGTTCCCCGTGCGTCGCTTGCTCCAGGACCAGGAGCCCTCCTCATCCTCCATTATCGACGACATCC CTTTTGAGGAGGAGGACGAGGACGAGGAGGACAACTACCACGATACCATTGGATCATGTAACGGCTTGGTCTGTTTGTAC GGCATTAATGATCATGGCTTGTGGTTCCGCCTCTGGAACCCTGCCACGCGCTTCAGGTTCCACAAGTCGCCACCCTTAGA CGCTGTTATAGGCTCCACTCTTCATTTTGCCTTCGGCTATGATCATTCACGCGACACTTATAAGGTCAGTTTAGTTTATA TCAATCATTATTATTTTTATCAAATTTCTGTTTTTTCTTTTTATATTATGTAAAATAGCGGTGAATGAATAGTGGAGTAG CGTTCAGATGAACGCCCTATGCTATATATATTCTTTTTGGGTTAATTTTATCATTTTCTCTTTGCTAGGTGGTGGTGTTG TGTTCTATATATTATGGCCGCCGTCTAGGGGGGCAACTTCTCACAATGGTTCATTGCATCGGTGATAGTTGTTGGAGACA GATTTCGAGGGACCCTGGCCTCCCAGTTGAGCTAGATCATACCAATGGACTGTTTGTAGGGGGCTGTGTTAATTGGGTAG CACTTGACGACCTCCAACGACGGATTGTTTCCTTTGACATTCATGACGAGACGTACCAGTCGTTGTCACTACCTAAGGGT ACTAGTGAGTTGCCTTACGTTGAGATACAGGTTTTGGGGAATTGCCTTTGCCTTTTTCATGACGATAATAGAACTCATTT TGTTGGGTGGAAAATGACAGAGTATGGAGTACCAGAATCTTGGACTCGTATGTTGAGTATCAGTTATCAACATTTTCAAT GTAATGATGTCATTCTGCGTCATCGATGGCTGGTATGCTTGTGTGGAGATGGAAACATCCTTATGCTCGCAAAAGATGAG GGCGGTTTGGTTATCATATTTAATCTAAGTGATAATAGTGTGAAATATATCAAATTCCCACAAAAAGACTTTGGTTGGGT GCTGAGGATTACGTAGAGAGTCTGATTTCACCTTGTTAAGATTAAGCTCCTTGGTGACAATTTGTTTTTCTGAATTTATC TTAAATTATGTAAGAGATGATTAGTGTTATTTAACTTTACTAATTTGTTGGTGACTCTATTGGCTGTTGTTAGTTATTTA AAGCTTCTTTTGTGCTTGAAAGGGTTGATTAAGATGCTAGTTATAATAATTTGTCCATTAATTTTTAGATAAAAATGATT ACTTTTAGAACATAATTTTAAACCTAAGTATAGTTAGTTATTTTGTGCTTATCAAAACTGTAAATTCATTTCCTTGCATT AAAGGAAAAAATCATTCAAATGCAAGTGTCATAAAGCATTTTTGAATTATTTTTTACTGTCATCCATCCATGTTACAATC TTAGTCAGATGTAGATGTCAACGTATAATTTTTTACATCCAATTTAGTATTTGTTTAAGACAAAGTTGAAACCTGATGCA TAAGGGTAGACTTGTGGCCAAAGACTTCATGCAGAGGGCTTGATTACTCTAAGGTGTTTGCACCTGTAGCTAGCACTACA CCATTTTGTGCCTCTAGCAACGAGTCTAAAGTGTTGCTTAAAATAGAATAGCTAACACTTGTTCAGTGTTTCCATAAAAT ATGTATTTTAGCAACACTCATTTCCTAACATAGGACAAGTGTTCCCTAAAATTTATATAGCAACAATTTTGTCATGTTAA TATTGTAAATTACATAGCTTAACATTTGATGAGTGTTGCTCAAAGTTAAGTCAATTTTAAAAATTAAAAATAAAATCTCA AAATGAAAATCAGATGAAATTGAAAGAATAGGGAAGTCTCTGGAAGCTTGCAGATTCTCGCGAAGACGAAGACGAAGCTC GCAGGGTTCGTCTCTCTCGCACTCCATGGAAGCTCACAGGGTTCGTCTCTCTCTCTCTCGCACTAATCAATGCTCGCAGG GTTGGTCTCTCTCGCACTCCATCGAAGCTTGCAGGGTCTGTCTCTCCTTCTCTCTCGCACTCCATCGAAGCTCCAAGATC CTTCTCTCTCTCTGTCTCGCACTCCATCGAAGCTCCAAGGTCCATCTCGTCAGTTCACTCCGTTCCTCTTGCGAACAAAA GGTACTCCTGGTATCTCTCTCTCTGACTCACTGACTCACTCACTCTCCCAATTCATATGGTTTCAATTTGATTCTAGGGT TTGGAACAATTTTAGTTTGATTTTAGGTTTTATTGAAATCATTGCTCTCTGATTGCTTGGGTTTGTGTTTTCTGCGATTT TGGTTTTGATGAGGTTTTGGTGTGGTTCTGTTAAAAGTGATATAGACAAGCTGGAATACCATCGATTTTGTAGAAATTGA TGATGAATTGTGATGAATTAAGAAATAAGCATCACACTTTTGTAAACGAAGCAAACATAGTATATCAATTGAGTGATGAA ATTTGGATGCAAACTCTAGTTAATGTGCTTCATTTGATTACAAAATTTTGACTACAATAAGCACATGCTAACTATGACAT ACAAGTTTCAGATTAAAGGTCAACCATTGCAGTAGCTAGTTGTTTTAGATTTATGATTTGACACCATTGCAGTAACTAGT TTGTTTAGATTCATGATTTGACAATTTTGGAGGGATCAACCATGTTTTTACTAGTTGGCTTTTGGTGCACTTGATACTGC TATTCAACTATGCTGGCTTTATAATTATGCTAGCTCTGAGACTAAGTTAGCTTAATATTTTTATCATTCCTTTGTCCCTC TTGTACTTCTCTACCACAACACTTTGCTTAGCCAATTAATTGAACACCAGATTGAGCAAAAACAGTAATATGGCTTCATT GATTTTGTATTTTTTTTTTGCTTTCTGAAAAACAATTTTTGCTTTCACATTTACTTGGGCTGAACCTAGTTAATGTATTA GTGCCTGCTAAAGTTGAGACTATCATGACAAGACCGCCTTCCCCACTTAAATTTCAAAAATAATCTCATCACCTTCCATT TTTTCAGAGACACAGCCCTAGATTTGTGTATCTTTCTGAAAGACAATTCATTCACACTTTACTGTGTGGATTCAAATAGT TTATTAATCTGGTCCATTGATTTGAAGTTTATCTCAAAAGATATTTGAGTATGGAAAATTTTAAAGTTACCATTCTGATT TTTGGTCTCTTCTGATTTTATGCTCCATTTTGCTCTCTTCTGATTCATTTTGATGCTTGTATTGTTCTATGTAGATTATT ACTTCCATTTTGGAAGTGGTAATAGTTTATAGATTCATTTCATTGAGCTTTCTTATATTTACCATTGAGAAATCATGCTG TTCTTATTGGGCGAGATAATCCAGATGACAGTTGCTTAAATTTATAGTAGAAAGCTCTCTAGTCTTCACTGTTAACATAT CTGGCAGTTGCTTAACCACTTTAAATTTATTCATTTTCAGTTTCATATTAAGCCTTAAATGTATTTACAATTTGTATCAA AACATATTTTGTTTACGGTTTTGCTTTCACATTGCAGGGTCATTGAAAAGGTATGATTGCAATATTGATTGCATAAGATG AATTTTTGGACAGAAGTGGCTGTGGTTCTTGTTGTGATCAGGTCAGTTTTACCCCCCAAAGATACATCATTGCAGTGGGA GCTGAATCAAATTGGGATAAAGTAAACCTTGAACTTAAAGGAACCAAAATTAAGGTCTCATCCCAAGAACCTTATTGACA AAAAGCTAAAAGGAGATTCAATTGTTGTAGTATATTTTAAAATTTCCTTTCACCTAAAGTTGCCTTATCTTAGGTAAGGA CTATTTTCACACTCCCCTTGCTAGTGGTTCTATATATACTCAGCCAAACATTTTTCCTTTTTACTGTAAAAGAAGTGGGG TCTGAAATAAGTGATTATCCTCTTCTAGTACTAAATTAAGTCTGATCATCTGTTGAAAGTTTTTTATTCATATATTTCTC CTGAAGCATTTCTTTACTAAAGGGTCTATCCCTTTTTTCATGCATTGTGTTTGTTTACATATTAGAGTTTTGTGCCTTCG AAATCTAGTTAAAGGCACTGAGCATCGAAATCGTTGGCTTGATGTTTCACTCTTGATATGGATTTTAGGGTTTTTGTGTC TAGTGTTTAATTCAACAACTACTAAACAAGTGCAGAGGAAGCATAATATTGTTCTGTTTAATGGTAGTTGCTTTACTTTT GTAATGGGTTTAGTATTTAAGAAAATTCAGGTTTCTATTTGTCTATTTGGTTTGCGTATTATTCCTAATCTAAAGAAATT AAAACCAGGAAATTTGAGATAAACTGTGTTATAGTTGCATGTGTCTCTTAGCTGGATAGTGAGTCTAACTTTTAGATGTT AATGTCCTATAATGATAATTCCTATGATTTCCATCTCAGCTTACATCGTCTTGTGACTTAAATCATAAACAGGTATTGAT TTTGCAGTAATATATTTTCTAAATTTGGATAATTTTCATATAAATAGGTAACTTTCGTATGTAATCAATGTATGGTATTG GTGAAATCTAAACTGTGCATTTTTATTTTTCTATTGAGGGGCTTGTGCAGGGTGTCCTGCAGGAGAAGAGGGTGTATTGA TTCATTTTGATTCTACCTTCTACGCTAGAATCAAACAAGCTACTAAAACCATGTATAATCACACCCTTTAATATGAATGG TATAGTCTTGATACATATGTAGTTAGCCTTTGATTCTTTCTTCTGGTTTTAAGGATGTTCAGTACCCTCCTAGTGGGCTA TTAGTATTGTATGCAGTACCCTCCTAGTGGGATGATCCAGCAGGGAGCACACAAGAAAGTTAATGCTTGAACTGTAGGTG TCATAATCATCTATCATGTGGGGTTATTTGCTACATATCGAGATTTTAAGTGGATTTTAGTATTTGGTACTGTATTTTTG TCTTTTTCTTCTCATATGTATTCTCTATATTTTTCTTATGTTAAAAGTGTATAGTGTCATGTCAGGTAAAAAAGAGAAAT TCAGAAGAAAGCTCTACTCAATGGACTACTGATATTTCTGAGGTTCAGCACCCAATCAAGTTATAGGTCGTTGCTTGTCT TTTGAGGTGAGAATTCTTGTTATTCAGAGTTCTTGTTAATTGGTATCAGATAAGTATCATGTCATTATCTAATCCATCTT CCAATCATGCTCATTCCTTCCCCCTTTCTGGTTTCAGTTCCAGTTTGCTGATGGGTGGCAGTCTCAGTTTTCTGTTGGAA TTTGGGTAAGTTAACTGCTTTATCACAACTTTACAAGCCATGAGAGGATAAAGCAATTAACCCTCCATTTGATAAGAACT AGAAGGATAGCTAGCTTCTTAATTTTATTTGATAAGAAACTTGAAAGAATGAAAGCTAGTATTCTGTTTTTCCATGAAAG ACTTGATGCCTATAATTCAGAACTGTGAAAACATAACAAACACTAATATCTTTGAGGGCAAAAGCAGAACATAACTGATT TTTGAAAGTAAATATAAGAGTTGATATATATAGGTAGTGATATATGGCAGGGACGTATGTGATGAATTATTTAGCCTTTT GCAGGGTTGCTTAAATTATGCTTTTCTCCTTTTCCCAATGCAACTACTTTTTTTTCTTAGTAGTTACTATATATGAATCA TTTTTCTTATGCAGAAGGTTATCTAAGTGGATATGAAGAATTGTAAGAGGAGTAGAATGGACTTTGATTAAGCTACTTTA GGATGTATTTTTGCCATTGTCTTGCTTGGAACTATAACATTTAATCAAATTAGTTTTCTGTTGACTATTTTATGTATGTC TATGGATTAAGTTTTAAACTCATTTTAAGTGCTACTATTACAGAACATGTGATGTTATGATTGATCAACTTAGTATATAA TTCATGAATTATTTCTTGATTAGCTCTCTATTGTGTGTAACTCTTTTCAACTCTTATTTTCTTTTACTAGCTTTTACATC ATTTTAGGTGTGCTTTTAATAAAAATTGCTAATTTCAGTAAAATTTAGTTGTGCTAACTTTCATGATTTAACCATATTAA AGTGTTGTCTTAGTAACTTTAGGCAACACCGCATAAATGATTCTACACACATGCTTAGGTTACAATTTGAAACTGATACC TTAGCTATTTGTGGCAACAATTGGTAAGTGTTCATCAAAGGTGGATTCTACACACATGCTTAGGTTACAATTTGAAACTG ATACCTTAGCTATTTGTGGCAACAATTGGTAAGTGTTCATCAAAGTTAGTAACAGCTTGGAAGTGTTGCGAAAGGATCCA CCTATAGGCAACACTTATCGAATGTAAAATAAATTTAACTGTTGCCAAAACCATTTAATTGTTTCCAAAAGAATAGGTAA CACGGGCATATCCAACACTTCAACTAACACTTCAAAAGTGTAACCTTTGAGTTTAGGCAACACTTTTAGTACCTTATTCA ACAGTTTTGAAGTGTTGCGAAAGGTGAAAATTGTTGTAGTGTAGGCTTGAGACAGTGAGGTTCATGGTAGACCTAGCAAG CTGGACAAAATGAAAATTGTGGCAATTGGATGTGAAATCAGCCTTTCTAAATGGTCCATTAGAAGAGGAGGTTTTTGTGC ATCAACCTCCTGGCTTTATCAGCAAAGGAAATGAAGATAAGGTGCTGAGATTGAAGAAAGCACTCTATGGTTTCATTGTC CTCACATGCATAAGAGGATATTATCACAATCTAAGGTGAAGAAAATCTTAAAGCACAAAACATACATGTAAATAAAGAAG TAGCTGAGTTTCATTGTCCTCACATGATTAATATAGCCAAGAAATAAAATTAAATAGAAACTATGGTTTCTGGCAGCCTC TTAATGAAAAATCAGAAACTGTGTAATTGATAGTTATTCTTTTTCATAGTCTTAAGCTATGTAAAAGGAATAGTTAATAA AAGAAAATTAAACCGCAAATATAGTTGTAGCCTAGTGACTTGTTGATGATGTTAGATACAATTTACATGCTCATAATAGT TTCACTGTGAATTAAAATTGATGGCACGTACTTAGGTTCGTGTATGATTTTGAACAATGCAACATAATGTTTCCCAACTT AAATGCTCCTTTTTTAGTCCTTTGACCAGTGATCAGAATTGATTTTATTGCTATGGAAGAGGAGGAGGAGGTATATGAAG TTTTTGCAGGCAAATCTAGGTAAATCGCCTGGCATAATTTACTGGTTTCTGCCTCCTTGTAAAGTTGCTATTTACAATTT TACAATTAACAATGATGGATGTATCTTTTTTTAATCTTGCATCCTCAAGAATTGGATCTAAGTTCATGTGCATTCATCGT ATGAACGTTGCATGATAAGTCAACTGGAGAGGCAACACTTCTGCATTATCTGAATTTGAATGTCTATATATATAT
CDS sequence (LotjaGi1g1v0759400.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAAATCGAGTTTGTTTTGCCTTTCGAATTGTGGATTGAAATTTTATCTTGGCTTCCTGTGAAGACCCTGATGCGATT CAGTTGTGTTTCCAAGTCATGGAAATCACTCATCTATCAAGACAGAGACTTCAAGAAACTTCACTTGGACAGATCACCTA AAAACAACAATCAAGTAATCCTCACCTTACAAAAACCACTCTTCTCTGGCCGCACCTTCTTCCCGTTCCCCGTGCGTCGC TTGCTCCAGGACCAGGAGCCCTCCTCATCCTCCATTATCGACGACATCCCTTTTGAGGAGGAGGACGAGGACGAGGAGGA CAACTACCACGATACCATTGGATCATGTAACGGCTTGGTCTGTTTGTACGGCATTAATGATCATGGCTTGTGGTTCCGCC TCTGGAACCCTGCCACGCGCTTCAGGTTCCACAAGTCGCCACCCTTAGACGCTGTTATAGGCTCCACTCTTCATTTTGCC TTCGGCTATGATCATTCACGCGACACTTATAAGGTGGTGGTGTTGTGTTCTATATATTATGGCCGCCGTCTAGGGGGGCA ACTTCTCACAATGGTTCATTGCATCGGTGATAGTTGTTGGAGACAGATTTCGAGGGACCCTGGCCTCCCAGTTGAGCTAG ATCATACCAATGGACTGTTTGTAGGGGGCTGTGTTAATTGGGTAGCACTTGACGACCTCCAACGACGGATTGTTTCCTTT GACATTCATGACGAGACGTACCAGTCGTTGTCACTACCTAAGGGTACTAGTGAGTTGCCTTACGTTGAGATACAGGTTTT GGGGAATTGCCTTTGCCTTTTTCATGACGATAATAGAACTCATTTTGTTGGGTGGAAAATGACAGAGTATGGAGTACCAG AATCTTGGACTCGTATGTTGAGTATCAGTTATCAACATTTTCAATGTAATGATGTCATTCTGCGTCATCGATGGCTGGTA TGCTTGTGTGGAGATGGAAACATCCTTATGCTCGCAAAAGATGAGGGCGGTTTGGTTATCATATTTAATCTAAGTGATAA TAGTGTGAAATATATCAAATTCCCACAAAAAGACTTTGGTTGGGTGCTGAGGATTACGTAG
Protein sequence (LotjaGi1g1v0759400.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEIEFVLPFELWIEILSWLPVKTLMRFSCVSKSWKSLIYQDRDFKKLHLDRSPKNNNQVILTLQKPLFSGRTFFPFPVRR LLQDQEPSSSSIIDDIPFEEEDEDEEDNYHDTIGSCNGLVCLYGINDHGLWFRLWNPATRFRFHKSPPLDAVIGSTLHFA FGYDHSRDTYKVVVLCSIYYGRRLGGQLLTMVHCIGDSCWRQISRDPGLPVELDHTNGLFVGGCVNWVALDDLQRRIVSF DIHDETYQSLSLPKGTSELPYVEIQVLGNCLCLFHDDNRTHFVGWKMTEYGVPESWTRMLSISYQHFQCNDVILRHRWLV CLCGDGNILMLAKDEGGLVIIFNLSDNSVKYIKFPQKDFGWVLRIT
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 4 | 45 | 42 | 4.4E-9 | – | |
| SUPERFAMILY | 6 | 80 | 75 | 1.7E-13 | ||
| ProSiteProfiles | 7 | 47 | 41 | 11.087 | ||
| SMART | 7 | 47 | 41 | 2.9E-8 | ||
| Pfam | 7 | 45 | 39 | 1.9E-9 | ||
| PANTHER | 12 | 318 | 307 | 4.9E-43 | – | |
| PANTHER | 12 | 318 | 307 | 4.9E-43 | – | |
| TIGRFAM | 114 | 334 | 221 | 3.0E-20 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi1g1v0759400.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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