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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0762800 |
| Transcript ID | LotjaGi1g1v0762800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Ethylene-responsive transcription factor; TAIR: AT2G47520.1 Integrase-type DNA-binding superfamily protein; Swiss-Prot: sp|O22259|ERF71_ARATH Ethylene-responsive transcription factor ERF071; TrEMBL-Plants: tr|D9ICY5|D9ICY5_SOYBN ERF protein; Found in the gene: LotjaGi1g1v0762800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:133553072..133556746) extracted from Lotus japonicus Gifu genome v1.2.
GAAAAATAGAGAGATATTGTTGTGTCGTGGCAAGCCACTGTCCTGAAGCAAAATTTTTGGTGGACCACGGTGTAAATCCT AACTGCCGGTTTTACCCCCAAGGGTTTACACAACTACGATCTAATCCGTGCACTCGAGGCAGACCGTATAGAGCCTTCAC AAAATATTGCCGAGAATAGAGAATGATGTAGAAGAAGAGAAAGAGAAAAACACGTAAAACACAAGGAAGAAGATGATTGA ATTACTCCTGATCTCAAACTCACGCCGCACCTTTTCATATAGATCTAGCTACTGGACAGTGTAACTGATGCTCATGCAAG AGTATTATAGGCAACTCAATAAAAGGATTTTATTGACCATTTAATTTCATTTTGAATGCTGAATCAATGGCCTTGACCCT TGGAAACCATTGACAGAAATGCCATGCAAAACCAGTGGCGGAATTACTGAATTAGTGAATGATTTCACTGAAATAGGCAA TAAGGAAAATTAATAAATGGCTCTTGAATGTCATTATCCAACAATGCTGGCTTGCCACGGCACAACGATGTATCTCTCTA TTTTTCCTACAATCTGAAGCAAAGGTTTTTGTTCATTGCTGATGCTGATCTACTACTCTCCTTCAAACATGGAAAAGGGA GTTATATTTTCTTAGCCTTTTTGTGGATTTTATTTTAATTTCATCAGTACAATGATTTTAAATTTTGAAGAGGATAGAAG TGTTTTTAACCATCCGATTGTCATGCCTTCTTGTTTGAAGATTTATACCTTGAGCACACCTTGCATTAGAATCTTTTCCA TATGGCTACAGGATGATCAAGCAGCTTCAAAGTTCCAAGGTATGGAAGCATTATTAATGCATTTTGGGTTTAGTCTATGA AAAAATTGGTTTATCATGATTTATTTCCCTAAGATGAATGTCCAAACCGGTAAATCAATGAACCCAATTCCTTAAGGCAT ACATGGTGGAAAGAAATATGGTAAATAAAATAAAATAAAAACCTCTTGATCATAGCGCGCAGTCACTATCAGAACATTAT TTACAGGTTTATGACGATATGAATGTGCCTTTAGTGATGGAAATGTTATAGGTTGACTACTTACTCTCTTTTGATGGTCT ATATGGTTTGAATGATCTGAGGATAAACTCTCTTAAGTTAAACATGGGGTGGACAGAAATTTGAGCTAAACACGGATTAG AAAGAAAGCAGAAGTTCGAATACTCAATTAAGATATATTCTTTGGAGTGATCTTAGCCTTGGTTAATAGCATGAGAAAAA AAAATGATAATAATAAAATTGGCGTTCAATTTTTTAATTTTGTTATTCTCATGGCTGTGCCACATATAGATTCTTGAACC TGAATGATATCAGCATGATTGACTGTAAAGATGTTGAGTTATGTGAATAATTCATATTATGTTGATGTTTATGTGCACCT GAGTAATTCATATTATGTTGATGTTTATGTGCACCTGAGTAATGGTATGAGAAGTTAATAGTACTTTGATGAAATATGAA TGTGTTGTGAATTCTTCTAACACTTGTGTACATAATTTTTTTTTTTGAAAGTGCATAAAATTATTTGAAAATGAGTATGT TGTTTCTTGCTTTCATATGTATGATGTGTTCATATATGGAACTAGCTTGGAAATGATTTCAAATTTAAAATTAAAGCCTT AAGGAAGGCTAATGTGATTCTTCTGCAAATGAAAAAAAAGAAGAAGGTTTTTGTTTATAAAAAAAAAGTTTGTCTAAATA GAAATCACACAATAATAATGAGTAATCATTTAAGAAGTTCAATATATTTGATGTTACGCATGCTAAACTTCACATGATGC TAATGTGTGACAGTATATATATGAGTTGTTTTTAGCATATCGATATTGTATTTTCTATCATATCATAAATTATATCTTTC ATTTCTCTTATCTCTTAGGTAGAGATATAAAAATGTTGATAAAACATTATTCTTTTTTAAGTAAGCTTTCACTATTCACT TATTAGTTATGGGAGAACCTAATATGCACCATTTTTAGGTGGTGTAATTTTACACCACCTACTTTGACTTAGTATAACAG ATCAACACATTATATTTTTTAAGAAAAAAACATCATTAAAAATTTGTCATATATTAAATATCTTTAAAAAAAGATGTGTT GACCTATTATAGTAGGTTAAAAAAGTGGTCTAAAATTAGACCCGTTTAAAAGTGGTGGTCATTGAAGAGTTGTGATTAGG GGTTGGTGAACCGTACACGTAAGAAGTTTCCTAATGAATTGCCAGGATCAGATCAAGTCAATTACTGTGTACAGACAAGG TCTATCTGTCACGTCACGTCTTATTTTCAACCTACAAAACCCCTCTCTTCCCCTCCCATTCATTCTCAATTCTCATACCA AAACAAAACACACAACTCCTTTCCCTTTCAAGAAAACAAACTCTTTGAAAACAAACTCCTTTTCCTTTCCATTAATTTCA GTATCCCTCTCTACTTCGATCCAGTTATTTCACGCATCTTATATACTATAATCTTCGAATCTTCACAAGCATGTGTGGCG GTGCTATCATAGCTGACTTCATCCCTCACCACGGCTCTCGCCGCGTCACCGCCTCTGAACTCTGGCCTAACACATTTGCC AAACACAATGACTCCCAGTTCGATTCTTCTCATCATCCTCAGCACCACCAATGTTCTGATTCAGCCCCTCTCAAAAGGTC CCAACCTTCCCCTGCAGCTACAGGTCAGTATCCTGTTAAAATATTGTTTGTTTTGTCTATCAATTAATCAAGTTCAATGA GTTGAAAGCTTACATCACATTTATGGTGACTGCAGTGAACGAGCAAGTTGACAAGCCATTGAAGAGGCAGAGGAAAAACC TCTACAGAGGGATTAGGCAGAGACCATGGGGTAAATGGGCTGCAGAGATTCGTGATCCCAGAAAAGGGGTTCGTGTCTGG TTGGGTACTTTCAACACTGCTGAAGAAGCTGCAAGAGCCTATGATAGGGAAGCTAGGAAAATCCGTGGCAAGAAAGCTAA AGTCAACTTCCCCAACGAGGATGATGACCACTTCTCCATTCAATTCCAAGCACCTCCCCTGTTTCAACAGGGTTGCGGTT TGAACAGCAACGAAGTCAATGTCCCCAAAACTCAGACTTTTCAGTTTGCTTATGATCTGAACCAAGAAAGTTGTGCTGGG TTTGGATCTGCTTCGGGGTCGTCAGTGGAAGCAGAAGAAGAAGGGGTTGGAAATGAAGAGAGAAAGACGAACCAGGTGGA GAAGCTTTCTGAGGAGCTTATGGCGTTTGATGACTACATGGGGTTTTATCAGGTTCCGTACTATGAAGAGCAATCCAATG CTAGTGTTCATGAAACTGTGGTAGGGGATCTATGGAACTTCGATGCTGAGGAATGAGGATGTTCCTGTTACTTCTTCAGC CATGTGATCTTATGTGCAAGTGTATGCAAACTGACGTTGTTGGTCAAGTGTTGTTATTTTGATTTTCAAGTGTTCTGCAA TTTTCATTTTACATTGTTCACTTTTATTCTTATGAATGTCATTTTCTCATATACAAATGCCCTGTTTACTTTCAATTACT ATTTTACTATAATTTTTCCTTTCCTGTATGATCAGGATTTCACCATCCTCTTCTTATGTATGTGAAAACTCTCTG
CDS sequence (LotjaGi1g1v0762800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTGTGGCGGTGCTATCATAGCTGACTTCATCCCTCACCACGGCTCTCGCCGCGTCACCGCCTCTGAACTCTGGCCTAA CACATTTGCCAAACACAATGACTCCCAGTTCGATTCTTCTCATCATCCTCAGCACCACCAATGTTCTGATTCAGCCCCTC TCAAAAGGTCCCAACCTTCCCCTGCAGCTACAGTGAACGAGCAAGTTGACAAGCCATTGAAGAGGCAGAGGAAAAACCTC TACAGAGGGATTAGGCAGAGACCATGGGGTAAATGGGCTGCAGAGATTCGTGATCCCAGAAAAGGGGTTCGTGTCTGGTT GGGTACTTTCAACACTGCTGAAGAAGCTGCAAGAGCCTATGATAGGGAAGCTAGGAAAATCCGTGGCAAGAAAGCTAAAG TCAACTTCCCCAACGAGGATGATGACCACTTCTCCATTCAATTCCAAGCACCTCCCCTGTTTCAACAGGGTTGCGGTTTG AACAGCAACGAAGTCAATGTCCCCAAAACTCAGACTTTTCAGTTTGCTTATGATCTGAACCAAGAAAGTTGTGCTGGGTT TGGATCTGCTTCGGGGTCGTCAGTGGAAGCAGAAGAAGAAGGGGTTGGAAATGAAGAGAGAAAGACGAACCAGGTGGAGA AGCTTTCTGAGGAGCTTATGGCGTTTGATGACTACATGGGGTTTTATCAGGTTCCGTACTATGAAGAGCAATCCAATGCT AGTGTTCATGAAACTGTGGTAGGGGATCTATGGAACTTCGATGCTGAGGAATGA
Protein sequence (LotjaGi1g1v0762800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MCGGAIIADFIPHHGSRRVTASELWPNTFAKHNDSQFDSSHHPQHHQCSDSAPLKRSQPSPAATVNEQVDKPLKRQRKNL YRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDREARKIRGKKAKVNFPNEDDDHFSIQFQAPPLFQQGCGL NSNEVNVPKTQTFQFAYDLNQESCAGFGSASGSSVEAEEEGVGNEERKTNQVEKLSEELMAFDDYMGFYQVPYYEEQSNA SVHETVVGDLWNFDAEE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 254 | 254 | 1.6E-97 | – | |
| PANTHER | 1 | 254 | 254 | 1.6E-97 | – | |
| MobiDBLite | 32 | 66 | 35 | - | – | |
| MobiDBLite | 35 | 49 | 15 | - | – | |
| MobiDBLite | 50 | 65 | 16 | - | – | |
| Gene3D | 79 | 139 | 61 | 1.1E-30 | ||
| SMART | 80 | 143 | 64 | 4.4E-39 | ||
| SUPERFAMILY | 80 | 138 | 59 | 1.77E-22 | ||
| ProSiteProfiles | 80 | 137 | 58 | 23.775 | ||
| Pfam | 81 | 129 | 49 | 7.3E-12 | ||
| CDD | 81 | 138 | 58 | 7.74884E-34 | ||
| PRINTS | 81 | 92 | 12 | 6.0E-12 | ||
| PRINTS | 103 | 119 | 17 | 6.0E-12 | ||
| MobiDBLite | 189 | 210 | 22 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Molecular function | DNA-binding transcription factor activity | A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons. | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. |
Expression pattern of LotjaGi1g1v0762800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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