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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0764200 |
| Transcript ID | LotjaGi1g1v0764200.1 |
| Related isoforms 5 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Small nuclear ribonucleoprotein; TAIR: AT2G47580.1 spliceosomal protein U1A; Swiss-Prot: sp|Q39244|RU1A_ARATH U1 small nuclear ribonucleoprotein A; TrEMBL-Plants: tr|A0A151TXR0|A0A151TXR0_CAJCA U1 small nuclear ribonucleoprotein A; Found in the gene: LotjaGi1g1v0764200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:133696562..133704214) extracted from Lotus japonicus Gifu genome v1.2.
CGCATTTTAATTTCAAGTTGAACCAAGAATCTGAATACCAGATTTCCCATGATGTTCTTTTTTTATATTTATTTCCCAAA TGGAGTTAAAAACAAAGTAGTACTAGTTCAAACATTTACGATTGTTTGGGCAACAAGATCAGCTCTGAGCACCAGTGATG CATGGAATCCCACCACAATATTATAATCAGGTTTGTTAATTTCTTGGACAACTTCAAGGAAAGATTATCACAACACAATA CGCCACTGCCTACAAGACATGCCTGTCTTTGACATATGCGACTATCAAATTCTTTTATGCTGATTTTATTCTTTTTAATT ATTTGTATCGGCCAAATAATCATCAAATTGAAAATGACCAAATCTCCCTCTGTTCACTTCATCTAAACTTACTTGCCACG CACGCTTGGTCTTTCATTAGAAAATTTAAAGACCATCATTCATTTGATATTGGTTGACAGCAAAACTATAGTTGTTTTCC TACTTGCATTCGAACTCTCGCCATGAGTTGGTTCCATGATACATAATAACTTTTTAGGATTAATACCTCCATATGCATAT TCATCTCGATCTCATAGCTCTTAATTTTATTTTTTCTTTAATAATTATTTATTTGTGTTCTCAGTTCTCACCATGATCTG AGATTCTCATATCTAAGATTTATGCAGCCATCTCATCGCTAAAGAGAAAAACTATTTCATTAAGGCTTAGCTCTAGACTT TATAAATGAGATTAGTCTTGATCTTACGTCTATTACATCGTGATCCTTATAATTATTATATATGCCTCAAATCCGATCCG GTCTAAACACAGATGGCTCACTAAAACATGTAGGGTCTCGTCCCATACCCTATAAGTTCTCTTGATTAGGGCGCCAACTT AGGGCATAACCCCATATTCAATCCAATCTTTTCAAGGAACTTTTCCCTCAATCATACACTACTCCTTGCACCAATATTTT TAAGGGTAAAATGTAGAAGGTAAATCTATGGCGGGATAATCCACCCTTTTATGTTGCTCAAGCTTTGATGGTAGACATTT TAGTTTCTAATTAGTGAAATTGGCGTACTTTCTTAAAAAAAAAATAGAAGAGAAGCGCAGAAAAAACAATAGGATGCGAA ATTACAAGGGATCAAAACTAATTTTAGGAAGGAAAAAAATACTAATTGTATTCAGTAAAATTAGAAGATGTTACACCATT GATCAGCTGCCAATCCTCATTCTACTGGTTTCTAAAACTAATATGAAGAGCAAAATAATGGGAAAATAAGCATTGATCTA GTTTCATCGTCATCAAGCAGAGGACGTCACTACAGAACACATCATCACCATCATCAATATTCCATGCTCTTCATGATAAA CAGAACAATCCAAGTTTCTATTATGCCATATGACTCTTTTTTTAACGAAACATTTCTTAAATTGGTTGAGATATTGATTA ATTAGTTGTTGAATTTTTTGGCGAGAAGCATAGCGCGCATTTCTGCAACATCAACAACCTCCTTGGTGTTCTCTGGTTTG TAGTAACCAGTGACAGGGTCCGGCACCCATGAAACCTTGTAAGTTGAAGCACCTTTATCTTCCCCTCCCATCTTTGTCAT TCCTGATCCTCTTGTTGCGCTTTGTGTTGCCGCAGCAGCAGAGTAACCGCGTCTGTTCAACAATCAATCAATCAATCGCA TGTTAGTTAAATAACCAAATTGAAAATTTCACAATCATAAGATGGAGAATCGAATCAATGTAAAAGTTCAGTACCTGGTG AGAGAGGTGGAGATTCCGTCAAGGAGTAGAGCAGAGAGAGCCTTGGTGTTAGCGAAAGAGCGAGCCATTGATGATGATTG ATGATTCAAATGGAGATGAAATGAAAAGCTATGGAAAGAGCTTATTTCTGTGATTGTATATGAATTTCTGAATCAGAGAA AAGAAGCTCCCCACAGCTGAAGTTGATCCAACTTTTGATGATTTTGTGTGTTGATGAGAGAAGGGGTGAGGGTGTTTATA TAGGGCGGGGATATGAGTTTACTAGTCAAATTAAGTTGGATGCATGATTTATTGTTAGACCAGAATATTAGCCGCGTGCA AATATGAAATTAATTGATGTGTAAGTGTAAGTAACCTATGGTTTGGTGCCACTTGTGAGTGATTGAGTCATGACGGTTGA GTCATGAGGGAGTGAGTTGAACTTGGTCTTGCTTTTGACTAGGCCCTCTTTTCTCTATGTAAGTCAGTCACCACCCGCAA CTTGGTGATTACATGCATGTGGACAACTGGACAAGGTAGTGGTCGATAAGAAGGAACTTCTAGAGAATATCGAGAACCTT CTTCCCAGCACCCTCGCTCCAAGTGGATGAGTCATGTCATGAGAGTATATGCTTGTTGTTAAGCATTAGAATGTTAATCA TTGCAACTTGAAGTTAAATTCAAATTTGCCAAATCCAAATCAATTCCTCAAATATAGTAAAGTACCATTCTACTTTATAC TTTGAAGATGCACCAAAAAAACCTAAACGAGTCACTCAATTGGCCCAAACCATCTTTGGGTTACATAAAATATTCTACTA TTCCCTTTATTGAAGGTTTATTATTCTAGTTAATAATTTCAGCATATTATTAGTTCAAGTTCTGGAATATCTTGGGTAAT TGGATGTGGCCAATTGCTAGTTATCTCTAAGTTTGGTTTAACTTATCTAAAGTAAGGTAAAATAAACATGATAATCATTG ATTGATTTAACTTATTGACTTTATGAAAGTAGATAAATACTATTAATAATTATGATCCTTACTTTACTCTTAACTATATG TTTAATAAACTCTACTATCTACCCGTTATACTTGACTCTATTGGTCAATCCAAGTCATTTAGTTACTACTAAGAGAATTT TTTTTCTTTTTTTTAATACTCAACTCCATCTTTTTAGTGCAAAATAACACAAAAAACATACTTTCTAGTCACTCACTCAT GAATAAATAAGATGACTTTTGTTGACTAAAAAGATCACATGACTTTTGCATTTTATGAGAGCTAAAAACAAATATATATA TATATATATATATATTTTTTTTTTGACAGGAATTAAAATTAACCATTACGAATTTTACAAGGATGAAAAATATATTTTAG GCCCATAGCAGAAGAAGGCCCAGAGCCCAAACACATTTGTTGTAGGCTTTGAAGCAGCGTCGTCTCCGGCAGTGGCTTAG GGTTTCGGTCGCGGAGAAGCCGAGTTTGTTTTCCATTCACAATGACAGAAGCGAACGCGGGTCCTGAAACCCCTCAGAAC AACACCATCTACATCAACAACCTTAATGAAAAGATTAAGATTGAAGGTCTATTCTTCATTCCCTGTTTCCTGTTTCTTCG AATCAACGCATGTTCTTCTTGTTTTGATAATTCAGTTTTTTGGATGCAGAGTTGAAGAAATCTTTGCACGCTGTTTTCAG TCAGTTCGGGAAGATACTTGAGGTGTTCGCTGCCAAGACGCTCAAGCACAAGGGTCAAGCTTGGGTGGTCTTTGAAGATC TCTCTTCTGCTTCCAATGCACTTAGGCAAATGCAAGGTTTCCCCTTCTATGACAAGCCCATGGTACCTACCATATACACT TGTTTTCTACTATTTATTTATTTGTTGTGTTTGGTGTAGTTTTAATTAGGAGTAACTTCACTAGGTAGAATTATGTGGTT TTGTTTGCTTCTAATATTTAATAATGCTACTTATTAGACTTGAAATCGATAACAATCGTCATCTTGGCTTAGGTTTCATG TCAGAAAATTGTTAGAAATTTAGCATAACTTATGTGCCCACATGATTAGAGAAAGAGAAGAACAGCTTTCTAGAACATTG CCTTATCTAGTAGCAACTCTATTCTCCTCAATAGATGTTAGATTATTCATTTGAAATGGACTATAAGATGATAGGAAGAA GTCGAAATGTCGAATGTCTGAACATGTCAAATGTAGCACGAAATGGCTATTGCCTTGTGTCAAGTGGCTATCGTGTTTGC TATGCAGTTACTGGTGTAAGTTCTTTTTATCAGTTAGGCTGCCGGTCCCTCACCTCTCCTCACCGAACAAAATAGCAAGA TGTCTTCTTGGTTGGAACAATGGATTTTAGTTATAGAAATAGTCTAGGAGGACTCTTTTAAAGACTGATGCTAAGGACTA GCTGATCACAACGTCTTGATGTTTATCCTTAATGCTGAGGATCCATTAACTACAATTGTGATTAATTTGATAAAGAATCT TCAGCGGTTTGCCATTTTGAGCTAAGTAAACTATCAATAGGTCCCAATGGAAAAATTTCACTATAATTCTATTGAACTAG TTTATTTGTTTGTTTATGAATGGGGATTACCAACATGCATGGCTGAGGTTAATTGTTGGGCTGAAGGTGGTGATTAGGTG AAGCCCTTCCCGGAATAGGGATTCTAGGATTTGAGCTCTTAACAGAACATTGCATGTAATTATGTAAAGTTATCTTGTGA TCATAATTTGGAGTCGACAATAATTGCAATTTGCAACTAACTATTGGTGGGTTCTATTGAACAAGCTGTAACCGCAAGTT CATGGATCATATCAGATTTTGGATTTATTCAGCAGAGGAAAAAAAAAAAAATAGTTTTTTGTGGTGCGCGATATGTCTTC ATGATGTGGCTTTGGTAAATCAACGAATATTTTTATCTGAATGTTCTCAGGCTATGCAAGTTGTTTTTATATCATTTTCT GCTACAACCATCAATGCTATTTCTAGCTCTCTTTGTGCTGGTGGGGTTTTAATTGTCCGTAAATATGATATATTTGCTAG CATGTGATGTGATATGGTTCAATGGCCTTATTAGCTTGACATGATAGATTGCTTGGACATTTAATTCAACAAGTCCTTAT TAGAAATGTTTTCATAATTTTTCTCTTTAGTCACTGCTACTGATTCAAATATGCTGTTTTTCCCCCTGTTCTATGCAGAG AATACAGTATGCAAAGGCTAAATCTGATATCATAGCAAAAGCGGATGGTACTTTTGTTCCTAGGGAAAAACGTAAGAGGC ATGAGGACAAAGGTACAACACTCTGAGCTTTTTTTTAATGGATATTAAACTGTATGTTTGAACCCACATTTGAACAAAAA CAAAGTAAACTAAAGCTTATTTCCTCTTCTAAATTGGGGCCCAAGGCACTAAATGCCCATTAATGACAGTAAGGGCCAAT AGATTTCGTGGAATTGTCTCCCCCTTTAAACTAAATGATTTGTACTTTTTCCTTTTTTTTTTGGGTTGGAGGAGGGCCCT TTAGGGTTCAAATCGATTTCACACTTTTGTAATTGATAATATCGAAGAAGGAAAAGTTATAATAAACGTGAACTGTGACT CTCACCTACCTCTAGGCACCTAAGGCAAGTGTAGTTTTGTATTTCACCAATTTGTGTAATTTTATGTATCCCCCTGCTTG GGATAGTCTTATACAATACTTTTGAGCATCAAGGATGGATGCAACTCTTTTGCTCAAAAGCTGTGTAGTATGGACCATAT AAGGTTACTTGTTTTATTTAATGCATTATGTAATCAATAAATGTGAGTCACCTTGTTTCATTTTGTTGCAGGCAACAAAA AACGGAAGGACCAAAATGATGCTAATTTAGCTGGGATGGGTCTTAATCCTGCTTATCCTGGTGCTTATGGTGCAACACCT GTAAGTTTCTTCTGCTGTTTTAATTTACATTTTTGGTCAATGATCATGTTAACAATCCATTAGTATGCTAGTCCTTTGTG TCATTTGAGTTGAGCAACTTTAGAGTTCTTTCTATTTTATAGTACTTTGTCTCTTTTTTTGCCTTTCAAACATATTTTTG ATTTTCTGGTAGAAGAAGCCTTCAGGAATAGAAAACAAAGAAAATTTCTTCCAGTAAAAAAGTGAGATAGGCAGAAATTA AGGTCATACTCTATCTTGTTTCAAAGCAAATTATTCAAATACACCAAAAAGATGAACAATTTTGTTTCATGTTCTTCATG GCAACCATGTTTACTTAGTGTTTGGTAGACAGTTAAGAACATGGCATATGGATTCTATTCTATGTTTTGTATTTCTTAAA AATGGAACATAACTGGACATAAGAGTCAAAAAATGGTACACGATGGTTCCTTAAAAAGGGGTTGAATCAATGAAAACATA GTAGAACACTATTAATAACTTTTTATTGACAAAGTACCACTCATCATTCTTCTACTGCTCCTAAGGTTATGCGGCTTGAA CAGTCTCCCCATTTCAGTAATCTCACTGCAATCCCTTTTCCTTCTCTCACTCCATTCATTTCTTCTCTTTAATTACTTCA CACTTTTCACAACAGCACGTCATCACTCATCACCAAAGAAGAAAAGCTACAAAACTCACCAAATTTTCTTCTTTACCAAG CAGTAACCATTACAGATTATTATTACAATTTATTTATCTTATTTCTTCCTCAACTTTTTTAGTTCAAGTTTGGTAAAAGA TGTATTTGAAGAGTCAAAATGCTCCGGAAACATATTGAGATAGAATCCATGTACTAACCCAACTAAACGTTAATCAGAAT AAGGATATATGTAATTGAAGACATTGTTCTGTTTTGTTCATTTATGTCTTGAAAACAGAACAATACATATGGCTCTGTTC TATTCTATAATTACTGATTGCGTTTACAAGACATTATTAAATTGTATTCCATTCTGTTATGTAAGCATACCAGACACTAC ATTAGCTACTTCTACATTTGTTGCTTGCCCTTTCTAATATATCATCTCTCCCAGATACCTTATCCAGGTGGTTTAAAATC TATGGTACCTGAGGCTCCTGCGCCTCCCAATAATATTCTCTTCATTCAGAATCTTCCCAATGAGACAACTCCCATGATGC TGCAAATGCTCTTTCTTCAATATCCTGGATTCAAGGAAGTTAGAATGGTTGAAACAAAGCCAGGTATTGCCTTTGTGGAA TATGGAGATGAGATGCAATCCACAGTGGCCATGCAGGCCCTGCAAGGTTTCAAGATAACCCCACAAAACCCTATGTTGAT AACTTATGCCAAGAAATAGATAGAGGTTTCTTCAACTTATGGTACGAGAAGGGCAGGAATCATATATCTTCGACAATTTT TAATCTATCTAATGTAATGGTGTATCGTCTTTATTGGTGTTTACCCGTAGCAGCTTTGATTTGTGTAATGGTTACAGTTT AGAAAATAACTTTCACATTTTTATAAAAAAATCTGTATTTAATTCATTACTAACCGGTTCAAGTATATCCATTACAAATT ATGCCCCTTTCTCTAGATTTTGCATTTGTCTTACTTGATGAAGACTGATGGATCAACTTAATTGGTTTCATCAATTTGAG ATGCATGGTTCCGGTGACTTAGAATGAAAACAGAACAAGGTAATGGCATTAGCTCCACACTGACAGTGAATGCCTGTTAA CAATTATTTGTTTTTGCCATGTGACTGTGTTCAGATTCGAGCAAATGAGTTGAAAGATTATCAGGATAAGGAAGTTCTTT TTTAGTGGGTTCATGTTCCTTTTTTTCTGAAGCATGGTAAAAAACAGGAAGTGATGTAGAATTTTAGCTGTGTGGGAGCA TGATAGAGTTGAGTGACTTTAACCAATACGTGTGCATGACTAAATCAAAAGTA
CDS sequence (LotjaGi1g1v0764200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGACAGAAGCGAACGCGGGTCCTGAAACCCCTCAGAACAACACCATCTACATCAACAACCTTAATGAAAAGATTAAGAT TGAAGAGTTGAAGAAATCTTTGCACGCTGTTTTCAGTCAGTTCGGGAAGATACTTGAGGTGTTCGCTGCCAAGACGCTCA AGCACAAGGGTCAAGCTTGGGTGGTCTTTGAAGATCTCTCTTCTGCTTCCAATGCACTTAGGCAAATGCAAGGTTTCCCC TTCTATGACAAGCCCATGAGAATACAGTATGCAAAGGCTAAATCTGATATCATAGCAAAAGCGGATGGTACTTTTGTTCC TAGGGAAAAACGTAAGAGGCATGAGGACAAAGGCAACAAAAAACGGAAGGACCAAAATGATGCTAATTTAGCTGGGATGG GTCTTAATCCTGCTTATCCTGGTGCTTATGGTGCAACACCTATACCTTATCCAGGTGGTTTAAAATCTATGGTACCTGAG GCTCCTGCGCCTCCCAATAATATTCTCTTCATTCAGAATCTTCCCAATGAGACAACTCCCATGATGCTGCAAATGCTCTT TCTTCAATATCCTGGATTCAAGGAAGTTAGAATGGTTGAAACAAAGCCAGGTATTGCCTTTGTGGAATATGGAGATGAGA TGCAATCCACAGTGGCCATGCAGGCCCTGCAAGGTTTCAAGATAACCCCACAAAACCCTATGTTGATAACTTATGCCAAG AAATAG
Protein sequence (LotjaGi1g1v0764200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MTEANAGPETPQNNTIYINNLNEKIKIEELKKSLHAVFSQFGKILEVFAAKTLKHKGQAWVVFEDLSSASNALRQMQGFP FYDKPMRIQYAKAKSDIIAKADGTFVPREKRKRHEDKGNKKRKDQNDANLAGMGLNPAYPGAYGATPIPYPGGLKSMVPE APAPPNNILFIQNLPNETTPMMLQMLFLQYPGFKEVRMVETKPGIAFVEYGDEMQSTVAMQALQGFKITPQNPMLITYAK K
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 241 | 241 | 2.7E-140 | – | |
| PANTHER | 1 | 241 | 241 | 2.7E-140 | – | |
| Gene3D | 7 | 105 | 99 | 2.3E-29 | ||
| SUPERFAMILY | 11 | 230 | 220 | 4.03E-27 | ||
| ProSiteProfiles | 14 | 93 | 80 | 14.812 | ||
| CDD | 15 | 92 | 78 | 6.56507E-50 | – | |
| SMART | 15 | 89 | 75 | 4.3E-14 | ||
| Pfam | 16 | 86 | 71 | 4.2E-10 | ||
| MobiDBLite | 103 | 127 | 25 | - | – | |
| MobiDBLite | 103 | 131 | 29 | - | – | |
| Gene3D | 161 | 241 | 81 | 1.7E-20 | ||
| CDD | 165 | 237 | 73 | 1.18305E-39 | – | |
| ProSiteProfiles | 167 | 241 | 75 | 12.356 | ||
| SMART | 168 | 237 | 70 | 2.4E-10 | ||
| Pfam | 169 | 228 | 60 | 1.1E-12 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. |
Expression pattern of LotjaGi1g1v0764200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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