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LotjaGi1g1v0764200.6

Overview

Field Value
Gene ID LotjaGi1g1v0764200
Transcript ID LotjaGi1g1v0764200.6
Related isoforms 5
Lotus japonicus genome version Gifu v1.2
Description Small nuclear ribonucleoprotein; TAIR: AT2G47580.1 spliceosomal protein U1A; Swiss-Prot: sp|Q39244|RU1A_ARATH U1 small nuclear ribonucleoprotein A; TrEMBL-Plants: tr|A0A072UF39|A0A072UF39_MEDTR Small nuclear ribonucleoprotein; Found in the gene: LotjaGi1g1v0764200
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:133701514..133703620) extracted from Lotus japonicus Gifu genome v1.2.

ATGCAGAGAATACAGTATGCAAAGGCTAAATCTGATATCATAGCAAAAGCGGATGGTACTTTTGTTCCTAGGGAAAAACG TAAGAGGCATGAGGACAAAGGTACAACACTCTGAGCTTTTTTTTAATGGATATTAAACTGTATGTTTGAACCCACATTTG AACAAAAACAAAGTAAACTAAAGCTTATTTCCTCTTCTAAATTGGGGCCCAAGGCACTAAATGCCCATTAATGACAGTAA GGGCCAATAGATTTCGTGGAATTGTCTCCCCCTTTAAACTAAATGATTTGTACTTTTTCCTTTTTTTTTTGGGTTGGAGG AGGGCCCTTTAGGGTTCAAATCGATTTCACACTTTTGTAATTGATAATATCGAAGAAGGAAAAGTTATAATAAACGTGAA CTGTGACTCTCACCTACCTCTAGGCACCTAAGGCAAGTGTAGTTTTGTATTTCACCAATTTGTGTAATTTTATGTATCCC CCTGCTTGGGATAGTCTTATACAATACTTTTGAGCATCAAGGATGGATGCAACTCTTTTGCTCAAAAGCTGTGTAGTATG GACCATATAAGGTTACTTGTTTTATTTAATGCATTATGTAATCAATAAATGTGAGTCACCTTGTTTCATTTTGTTGCAGG CAACAAAAAACGGAAGGACCAAAATGATGCTAATTTAGCTGGGATGGGTCTTAATCCTGCTTATCCTGGTGCTTATGGTG CAACACCTGTAAGTTTCTTCTGCTGTTTTAATTTACATTTTTGGTCAATGATCATGTTAACAATCCATTAGTATGCTAGT CCTTTGTGTCATTTGAGTTGAGCAACTTTAGAGTTCTTTCTATTTTATAGTACTTTGTCTCTTTTTTTGCCTTTCAAACA TATTTTTGATTTTCTGGTAGAAGAAGCCTTCAGGAATAGAAAACAAAGAAAATTTCTTCCAGTAAAAAAGTGAGATAGGC AGAAATTAAGGTCATACTCTATCTTGTTTCAAAGCAAATTATTCAAATACACCAAAAAGATGAACAATTTTGTTTCATGT TCTTCATGGCAACCATGTTTACTTAGTGTTTGGTAGACAGTTAAGAACATGGCATATGGATTCTATTCTATGTTTTGTAT TTCTTAAAAATGGAACATAACTGGACATAAGAGTCAAAAAATGGTACACGATGGTTCCTTAAAAAGGGGTTGAATCAATG AAAACATAGTAGAACACTATTAATAACTTTTTATTGACAAAGTACCACTCATCATTCTTCTACTGCTCCTAAGGTTATGC GGCTTGAACAGTCTCCCCATTTCAGTAATCTCACTGCAATCCCTTTTCCTTCTCTCACTCCATTCATTTCTTCTCTTTAA TTACTTCACACTTTTCACAACAGCACGTCATCACTCATCACCAAAGAAGAAAAGCTACAAAACTCACCAAATTTTCTTCT TTACCAAGCAGTAACCATTACAGATTATTATTACAATTTATTTATCTTATTTCTTCCTCAACTTTTTTAGTTCAAGTTTG GTAAAAGATGTATTTGAAGAGTCAAAATGCTCCGGAAACATATTGAGATAGAATCCATGTACTAACCCAACTAAACGTTA ATCAGAATAAGGATATATGTAATTGAAGACATTGTTCTGTTTTGTTCATTTATGTCTTGAAAACAGAACAATACATATGG CTCTGTTCTATTCTATAATTACTGATTGCGTTTACAAGACATTATTAAATTGTATTCCATTCTGTTATGTAAGCATACCA GACACTACATTAGCTACTTCTACATTTGTTGCTTGCCCTTTCTAATATATCATCTCTCCCAGATACCTTATCCAGGTGGT TTAAAATCTATGGTACCTGAGGCTCCTGCGCCTCCCAATAATATTCTCTTCATTCAGAATCTTCCCAATGAGACAACTCC CATGATGCTGCAAATGCTCTTTCTTCAATATCCTGGATTCAAGGAAGTTAGAATGGTTGAAACAAAGCCAGGTATTGCCT TTGTGGAATATGGAGATGAGATGCAATCCACAGTGGCCATGCAGGCCCTGCAAGGTTTCAAGATAACCCCACAAAACCCT ATGTTGATAACTTATGCCAAGAAATAG
Download Genomic Sequence

CDS sequence (LotjaGi1g1v0764200.6) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGCAGAGAATACAGTATGCAAAGGCTAAATCTGATATCATAGCAAAAGCGGATGGTACTTTTGTTCCTAGGGAAAAACG TAAGAGGCATGAGGACAAAGGCAACAAAAAACGGAAGGACCAAAATGATGCTAATTTAGCTGGGATGGGTCTTAATCCTG CTTATCCTGGTGCTTATGGTGCAACACCTCATCTCTCCCAGATACCTTATCCAGGTGGTTTAAAATCTATGGTACCTGAG GCTCCTGCGCCTCCCAATAATATTCTCTTCATTCAGAATCTTCCCAATGAGACAACTCCCATGATGCTGCAAATGCTCTT TCTTCAATATCCTGGATTCAAGGAAGTTAGAATGGTTGAAACAAAGCCAGGTATTGCCTTTGTGGAATATGGAGATGAGA TGCAATCCACAGTGGCCATGCAGGCCCTGCAAGGTTTCAAGATAACCCCACAAAACCCTATGTTGATAACTTATGCCAAG AAATAG
Download CDS Sequence

Protein sequence (LotjaGi1g1v0764200.6) extracted from Lotus japonicus Gifu v1.2 Proteins.

MQRIQYAKAKSDIIAKADGTFVPREKRKRHEDKGNKKRKDQNDANLAGMGLNPAYPGAYGATPHLSQIPYPGGLKSMVPE APAPPNNILFIQNLPNETTPMMLQMLFLQYPGFKEVRMVETKPGIAFVEYGDEMQSTVAMQALQGFKITPQNPMLITYAK K
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR10501:SF46
2 161 160 9.0E-89 –
PANTHER
PTHR10501
2 161 160 9.0E-89 –
MobiDBLite
mobidb-lite
17 47 31 - –
MobiDBLite
mobidb-lite
19 43 25 - –
SUPERFAMILY
SSF54928
81 160 80 3.9E-17
IPR035979
Gene3D
G3DSA:3.30.70.330
81 161 81 7.0E-21
IPR012677
CDD
cd12247
85 157 73 2.30614E-41 –
ProSiteProfiles
PS50102
87 161 75 12.356
IPR000504
SMART
SM00360
88 157 70 2.4E-10
IPR000504
Pfam
PF00076
89 148 60 5.0E-13
IPR000504

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003676
Molecular function Nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0764200.6, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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