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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0765100 |
| Transcript ID | LotjaGi1g1v0765100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Phytochrome A-associated F-box protein; TAIR: AT4G02440.1 F-box family protein; Swiss-Prot: sp|Q8LEA8|EID1_ARATH Phytochrome A-associated F-box protein; TrEMBL-Plants: tr|A0A0S3S0C7|A0A0S3S0C7_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0765100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:133755621..133759031) extracted from Lotus japonicus Gifu genome v1.2.
CTCCAACTGAATCAGAGAGTTAACCGGAAGATTGATATCCAGAATCACCAGATCTCTCAGAAACCACCGCCACCGCCACC GCCACCGCCACCATGCCGTTGTTCTCTGCATTGACCGACGACATCGTCCTCAACATCTTCGCCAAGCTGGAAGACGATCC TCGTGATTGGGCACGCCTCTCCTGCGTCTGCACCAGATTCTCTTCTCTCATCACCGATTTCTGTTGGAAGAACAAGTGCT CTCGCTCCATCCCTCCCGATCTCCTCTCCGCCACCGATCCGCCGCTCTCCCTGCACAAACTCTGCCTCTGCTGCCCCGGC CTCCTCCACGCCGGCCTCCTCTTCGACACCTCCGATTTCGGTCTCGATCGTGACCTCGGCCCCGACCACCACCACCACCA ACAACAACCACTCACCCTCACACCACCGCCGCCGCCACCACCACCACCCTCTCAACAACCCGAATCCTCCGGTTGGTCCC TCTTCGATGACCTTTTCTACGACACCGTCTACGCCGCCTCTGAATCCATCCAACCACCACAACAATCACAACCACCGCAA CCCTCGTCGGAGGAGGTGGTGCGTCAGGGTGTTGTTGCGGAGGCGCGTGAGACAAAGAAGCGGAAGGTATGCGGGGCGCG GGGGTCCCATTTGGCTACCGGGACATGGAACCTGAGCAGGGAACAAGGGAGCAAGCTTCTCGCGAGGCAGTTTCGCGATG ACTGTCTCTACGTCTGCGATTGGCCTGGTTGCGTTCACTCTGAGGAGAAGAGGAAGTACATGCTCTTCAGAGGGGTTTTC AAGAATTTCAAACGGACGAGGGTTTGGAGGACCATCAATGATGGGAATCGGAGGAAGCTTGATCTGCCATGTGCGTTCTG CGCGTGTAAACACACCTGGGATCTGCACTCTGCTTTCTGCTTGAGGCGGGGTTTCGGGTTTCATGATGATGGGGAGCCTG TGGTTCGAGCATTTGTCTGTGACAATGGCCATGTTTCTGGAGCTTGGACCGATGTGCCCATGTACGCTTGATTGATTGAT TTCATTACTGGTTTTATTGCTGTTCTGCATTTCTGCATTTATCCAACTTTTCATTCTTTCTTTCTGAGATTTTCTCGGAA GATTGTAGATGTGAAAATAGAAGGAAAATTGTTAGAGGTTGTAGGAATAAAATAAAGGATGGGGAGCAATACCCTTGTTT ATGTTTCTTAGTTTTGCATTTGGATTCCATTATGTATGTGAGTCTTATCCCAAATTTGTGTGATTTAAGAGTTCTTCTAA GAAGAGAATTCAATTCATGAGAATGTAGCAGCAATAGGGTATGCTAATGCTTCTTAGATTGTGTATTAGTGCATGTTTAG AAATCCTTCTATACTTAGTTCTAAAGCCAGAATCAATTATGGTTTCTGGTGCTGCAATAATTGATTTCGAGGAAACATAA GCTAATCCGAACATGATATTATGTTAGTAATTTAGATTTTCTTGACTATAGCAATTGCTTAAAACAAGAGCCTAAAAGTT ACCTTGGTTTCTTCCTTCCTTATGATCCATTCAAAATTTCAGATGGGGAGGAATCTTTGTTTTGCCATTTGGTAACTGAG GTACTTGGTTCATAACTTCATATCAATATTGTTGCTGTGTGGTACTTGGTTCATAACTTCATATCAAATTGTAAATCTTG CTTGTGGAACTGTGATTGGCATCATCCATCTGTTTGCAGGGGGTTTCTGGTATCCCCAAGATGACTTTCCATATTTTGTG ATTTAGTGTTTGTAGTGTGTGGATTGCATTCTATTGTGATTGCCAAGTTTATTCAATTTTCTCTTCTCTGCAGTAGGAGA ACTGCAAGGGGAAAAAGGTTATTGATATAATGATTTTTCATAGTGTGTTTGGATCTAAGATTTTTTCACTCAAGAAGTGA TTATACTTTGATGCTGCCCCTCATATCTTCTGACCTAATTCTGTGTTCACCATTGTTCCAAACATACACAGAGATTTAAG ACCAATTCACATTTTAAGTAGGAAGGTTTTGCAATTTCATGTAGGTAGGACCTTTCAACTTGTTTTGGAACAAAGTTGAG TAAGTGGGAACAAATGTGTATTCCATTTCAAAAGCATACATGACAGGTGACGACGAATAAAGGAATGCGAATGTAACATT GTTGAAGAGTAAACTACCTCATAAGAAACGAGAGGACGCCAACGACCCATTCTTGACTCAATTATTACTCAGTTGTCAGA GTATAGAGCCACTTCTGTTGACAAATGTGGCAATGTGATTTTGGGGGGGGTGAAAGAAGTTTGCAAATAATGGACCTAAA GCTTTAACATTCATATAATATTCTCCTATTTTATAGAGAGAATCAGAGAATTATTTTCATATTTGAAAAAGTTTAATTTT ACTGTCCCTATCCCTCCCAAGCAGCGCCGCAGCAAACCCATCCACCCACTCTAGTTGGGTTTTGGTCTTTTTCATCTAAT AGGTTGGAATCTTTTTCTGTTCCATCTACCATGTCTTCCTCCTTTTTCTCCATTCATGGCTTTCCTCCACCTTTGAACAT TTCCCCTTACCTTTTCATTCACTGCCTACGGGAATAGTGGCGTTTCTCTTATAGTCTTGTTTTTGTAATGGGTTATATTT TGCATCGTGTATGGCAACCCCTTCGTTTTTCTTGCTCTCCCTGCATCAAACTCTTTACAAAATACAAACTACACAATCCA GCTCGGGGGGGTCCTGAGCCAGAAGAAACTCCATAGGCTGACTCACATTACTCTCTCTTAGAGTGTGCACGAATCTCATC TCCCACTGTCTTATGAGTTATGAGCAGATCCCTAATGTTCCAAACCAACACGACATAGACATAATTGCTTGTGAGGAGGC TAGAGATCAAAGAGACAGCATGAAGTGAATTAGAATAACACACCAATGCATAAACCCGCGATCCCACGCAACCCACAAAC CATAGAAAATGGCAAGCAACTCCATATGAAGAATGGAGGAATCACTACCAACACTAATATAACAAAAAATCCAGTCCTTA TTTCCATTTGAATGCACCCTCCAAAACTCAAGCTATTGGGGGCATCGCCGTAGCTGCCATCACAGTTTCAAAACCACACT CAAACCTGTTAGAGCCTCCCCATTTTGCGATCAAGTCTGCTGGAAAATGTTCCTTTGCACCTCTATATCAGCTATTTGCA CATCTTCTTGCGTAATTTGCTCCTCAAAACAAAATTTGTTCCACATGTTCCAAATGATCCAAACCGCTGCCATAGTCTTG CTCTCATCTACCCAAACCAATCTCAAAGAAAGTGGGATGATTCAAGCCAAAACCCAAAGGGACCCGAATTCTCCTCGCAA AAGTAACAATCCCTAAGACAATGAAGCATTGTCTTTGGATAAAGATGAAAC
CDS sequence (LotjaGi1g1v0765100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCCGTTGTTCTCTGCATTGACCGACGACATCGTCCTCAACATCTTCGCCAAGCTGGAAGACGATCCTCGTGATTGGGC ACGCCTCTCCTGCGTCTGCACCAGATTCTCTTCTCTCATCACCGATTTCTGTTGGAAGAACAAGTGCTCTCGCTCCATCC CTCCCGATCTCCTCTCCGCCACCGATCCGCCGCTCTCCCTGCACAAACTCTGCCTCTGCTGCCCCGGCCTCCTCCACGCC GGCCTCCTCTTCGACACCTCCGATTTCGGTCTCGATCGTGACCTCGGCCCCGACCACCACCACCACCAACAACAACCACT CACCCTCACACCACCGCCGCCGCCACCACCACCACCCTCTCAACAACCCGAATCCTCCGGTTGGTCCCTCTTCGATGACC TTTTCTACGACACCGTCTACGCCGCCTCTGAATCCATCCAACCACCACAACAATCACAACCACCGCAACCCTCGTCGGAG GAGGTGGTGCGTCAGGGTGTTGTTGCGGAGGCGCGTGAGACAAAGAAGCGGAAGGTATGCGGGGCGCGGGGGTCCCATTT GGCTACCGGGACATGGAACCTGAGCAGGGAACAAGGGAGCAAGCTTCTCGCGAGGCAGTTTCGCGATGACTGTCTCTACG TCTGCGATTGGCCTGGTTGCGTTCACTCTGAGGAGAAGAGGAAGTACATGCTCTTCAGAGGGGTTTTCAAGAATTTCAAA CGGACGAGGGTTTGGAGGACCATCAATGATGGGAATCGGAGGAAGCTTGATCTGCCATGTGCGTTCTGCGCGTGTAAACA CACCTGGGATCTGCACTCTGCTTTCTGCTTGAGGCGGGGTTTCGGGTTTCATGATGATGGGGAGCCTGTGGTTCGAGCAT TTGTCTGTGACAATGGCCATGTTTCTGGAGCTTGGACCGATGTGCCCATGTACGCTTGA
Protein sequence (LotjaGi1g1v0765100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MPLFSALTDDIVLNIFAKLEDDPRDWARLSCVCTRFSSLITDFCWKNKCSRSIPPDLLSATDPPLSLHKLCLCCPGLLHA GLLFDTSDFGLDRDLGPDHHHHQQQPLTLTPPPPPPPPPSQQPESSGWSLFDDLFYDTVYAASESIQPPQQSQPPQPSSE EVVRQGVVAEARETKKRKVCGARGSHLATGTWNLSREQGSKLLARQFRDDCLYVCDWPGCVHSEEKRKYMLFRGVFKNFK RTRVWRTINDGNRRKLDLPCAFCACKHTWDLHSAFCLRRGFGFHDDGEPVVRAFVCDNGHVSGAWTDVPMYA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 1 | 103 | 103 | 1.7E-6 | – | |
| SUPERFAMILY | 1 | 79 | 79 | 5.23E-9 | ||
| PANTHER | 3 | 312 | 310 | 4.1E-143 | – | |
| PANTHER | 3 | 312 | 310 | 4.1E-143 | ||
| Pfam | 9 | 49 | 41 | 1.4E-6 | ||
| MobiDBLite | 94 | 126 | 33 | - | – | |
| MobiDBLite | 107 | 123 | 17 | - | – | |
| MobiDBLite | 145 | 165 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi1g1v0765100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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