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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0765800 |
| Transcript ID | LotjaGi1g1v0765800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | WD-repeat protein, putative; TAIR: AT2G47790.1 Transducin/WD40 repeat-like superfamily protein; Swiss-Prot: sp|Q54QU5|WDR89_DICDI WD repeat-containing protein 89 homolog; TrEMBL-Plants: tr|A0A151S8C8|A0A151S8C8_CAJCA WD repeat-containing protein 89 isogeny; Found in the gene: LotjaGi1g1v0765800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:133893618..133896415) extracted from Lotus japonicus Gifu genome v1.2.
ATAGATATCGATATCGAAGAAGAAGACATTGTTATGCGACTCCAACTGTAACGGAACAATGGAAACCAGTACGGCCATGG ATATCGAGGAACAACCTTCACCACCGACACCCAACAACGTTAAACGCTTTGGACTCAAAAATTCTATTCAAACTAACTTC GGCGACGACTATGTTTTCCAAATCATTCCAAAGGATGATTGGACTGCAATGGCGGTTTCATTGTCAACGAACGCAGTGAA ACTGTATTCACCTGTTGCTGGTCAATACTATGGAGACTTCAAGGGCCACTCTTCAACCATCAACCAGATTTTGTTTTCAG GTCCTTCCAATCCCCATGTTCTCAACTCGTGTTCTTCAGATGGCACTATTAGAGCTTGGGACACGCGAACATTTCAGCAG GTAGATTTCACTTGACTTGATTTGTAAATTATTTTTGTTAATTATGACCCAATTTCTGTTTAAGTGTTGAATTGAATGTG AAACTGCAGGTTTCTACAATTGATGCTGGTCCTTCTCAAGAGGTCTTCAGCATTTCTCTTGGAGGGCCTAATGGGAATTT GATTGCGGCTGGTTGTAAATCGAAGGTTTTCTTTTAGTTGTGGCTACTTTAGTGATACTGTGCATATTAAACTTGTGTTT AAGCTATACCTTCTTGTGTGATTTTGCTCAGATACTCTTCTGGGATTGGAGAAATAGGAAGCAAATTGCATGCCTGGAAG ACTCTCATGTGGAAGATGTCACTCAGGTTTGTACTGTGATTTAAATTGCTTGAATTGCAAGTGACAACAATTTATACTTT AATCTGAAAGACTAAAACTTAGTCTGATGGAGTTACTTGAAAATTATACCCCTGCTCTCTCCAGAATAACTGAGAGTGTG CTTGCAAACACTTTTATTCAGTTTGGTTCACTTTCCAATGTTACGTTTGTGAGACGAAACAAATGATGGCGTTAATTATT TAACTATTCAATGTGAAGCGTATGTTCATGTCTTATAAGTTGAAAGTGTGTGATTGGTGCTAGGTTCATTTTGTCCCTGA TGAACGAGGCAAGCTTATTTCTGCTTCAGAAGATGGTTTGATCTGCACATTTGATACCACGGGAGATATCAATGATGATG ATCATCTAGAGTCAGTAAGTCCAGGACTTAAAATTGAATTTCAATCTGTGTATAATTCTTGCAACTTGCAACCTTCTTAA ATGACCAGAGATATCAAAGAGCTAAGCAATCATATGAAAAATTGTATTCTTGGTCTCTCTTTTTTTTTGGTCAGCATATT CTTGGTCTCTCTGGTTCTCTGCTATTGGGTATTTAGGGATTCAGCAGCCTTGCTAGTTGCTACCTTTTGAATTCCATTTT ACTTGATGCATTTTGCTCTTCATTTTGAAGGATTTCGTATCTTCTTTAGTGGTATTTTTTCCTTCTTTGTTTAAATATTA CGTTCTGTGCATGTATGTAATGGTCAAATTGTTATTACTGATCCTATCTGTTACTAGGATGCTTATATATGCAGAGCTCA AGTTTCACATTTTAAAAAATAGAAGGTTTCTTTGTGTCTTTTGTATTTTTGAACTGCTGTTTGTTTGGCATGCAAAATTA ATAAATTTCTTGTTTACAAAATTGTAGGTGATTAATGTGGGAACTTCCATTGCCAAGGTAGGGCTTTTTGGAGAGAGTTA TCAGAAGCTTTGGTGTTTAACGCATATTGAAACCTTGGGGTACAGTTTATCTCCATTAGCTTTTTTCCCCTTAATGCTAG ATATGGTAGTTTACTTATTTTCTATCTGAAGTGCAATTATGCATAATATGATTGTGTGCTTTGCCCGGCATTCAATGTTG TTATAGTTGCTAAAGTAAGGTAAACTCATACAGACAAGTAACCGCTATTATACAGATTCATATGGTTTATGCAGATAGTG CTTACAGCTATACTCATTATGCTTACAGTTGCATTCTTATATCTTATACTAACTATTCCCTTTTTTCGCAACGCTTGATT CTAATATTTTTTTCTATTCTTCTGCCTAGTGTCTGGGACTGGAAAGATGGTAGAAATGAAGTGAACTTCTCAGATGCTCG TACTTTAGCTTCTGAGAGTTGGAATTTGGATCATGTGAGTTCCTCCCTATTTGATGGAACATGCTTATTTATTTGAACCG GAAAAGCATTGTGCTTTATACAACAGAAATAATTTGCAGACATCTAAGTAGTGAATGTGATATATGATGGATGTGATACG GATAGAGGGATAGAGAGAGAAAAAAATGAGGTATCTGTTGAGTGTTTGCACTTTGCACTGTTTGGGTTTACAAGTATCAT TACTGTTATACGACCATGCATGAAACTATAGTTTTTATCTAAAAATAAGAATGTAATGTGATGTAGTGTATGATATATCA TTGCTTGTCATATCTTGCAGGTTGACTATTTTGTTGATTGCCATTACTCCAAAGAAGCTGAAAAACTATGGGTGATTGGT GGCACTAATGCTGGTACTTTGGGTTACTTTCCTGTAAAGTACAGTGGAGAGGCAACAATTGGAGGTGCAGAAGCAATTCT TGAGGGTGGCCATACAAGTGTCATTAGGAGTGTTCTCCCCATGTCTAGATTCCATGGTAGTGGACCTTCTAATTGTCCTA GCACTGGAGGTATTTTTGGATGGACTGGGGGGGAAGATGGTAGGCTATGTTGTTGGCTTTCTGATGATTCACCTCAAATA AATCAATCTTGGATTTCAAGCACATTGATTATGAAGCCAGAAAGAATACGCAAGAAAAATCGTCATAGCCCCTACTAG
CDS sequence (LotjaGi1g1v0765800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAAACCAGTACGGCCATGGATATCGAGGAACAACCTTCACCACCGACACCCAACAACGTTAAACGCTTTGGACTCAA AAATTCTATTCAAACTAACTTCGGCGACGACTATGTTTTCCAAATCATTCCAAAGGATGATTGGACTGCAATGGCGGTTT CATTGTCAACGAACGCAGTGAAACTGTATTCACCTGTTGCTGGTCAATACTATGGAGACTTCAAGGGCCACTCTTCAACC ATCAACCAGATTTTGTTTTCAGGTCCTTCCAATCCCCATGTTCTCAACTCGTGTTCTTCAGATGGCACTATTAGAGCTTG GGACACGCGAACATTTCAGCAGGTTTCTACAATTGATGCTGGTCCTTCTCAAGAGGTCTTCAGCATTTCTCTTGGAGGGC CTAATGGGAATTTGATTGCGGCTGGTTGTAAATCGAAGATACTCTTCTGGGATTGGAGAAATAGGAAGCAAATTGCATGC CTGGAAGACTCTCATGTGGAAGATGTCACTCAGGTTCATTTTGTCCCTGATGAACGAGGCAAGCTTATTTCTGCTTCAGA AGATGGTTTGATCTGCACATTTGATACCACGGGAGATATCAATGATGATGATCATCTAGAGTCAGTGATTAATGTGGGAA CTTCCATTGCCAAGGTAGGGCTTTTTGGAGAGAGTTATCAGAAGCTTTGGTGTTTAACGCATATTGAAACCTTGGGTGTC TGGGACTGGAAAGATGGTAGAAATGAAGTGAACTTCTCAGATGCTCGTACTTTAGCTTCTGAGAGTTGGAATTTGGATCA TGTTGACTATTTTGTTGATTGCCATTACTCCAAAGAAGCTGAAAAACTATGGGTGATTGGTGGCACTAATGCTGGTACTT TGGGTTACTTTCCTGTAAAGTACAGTGGAGAGGCAACAATTGGAGGTGCAGAAGCAATTCTTGAGGGTGGCCATACAAGT GTCATTAGGAGTGTTCTCCCCATGTCTAGATTCCATGGTAGTGGACCTTCTAATTGTCCTAGCACTGGAGGTATTTTTGG ATGGACTGGGGGGGAAGATGGTAGGCTATGTTGTTGGCTTTCTGATGATTCACCTCAAATAAATCAATCTTGGATTTCAA GCACATTGATTATGAAGCCAGAAAGAATACGCAAGAAAAATCGTCATAGCCCCTACTAG
Protein sequence (LotjaGi1g1v0765800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
METSTAMDIEEQPSPPTPNNVKRFGLKNSIQTNFGDDYVFQIIPKDDWTAMAVSLSTNAVKLYSPVAGQYYGDFKGHSST INQILFSGPSNPHVLNSCSSDGTIRAWDTRTFQQVSTIDAGPSQEVFSISLGGPNGNLIAAGCKSKILFWDWRNRKQIAC LEDSHVEDVTQVHFVPDERGKLISASEDGLICTFDTTGDINDDDHLESVINVGTSIAKVGLFGESYQKLWCLTHIETLGV WDWKDGRNEVNFSDARTLASESWNLDHVDYFVDCHYSKEAEKLWVIGGTNAGTLGYFPVKYSGEATIGGAEAILEGGHTS VIRSVLPMSRFHGSGPSNCPSTGGIFGWTGGEDGRLCCWLSDDSPQINQSWISSTLIMKPERIRKKNRHSPY
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 22 | 22 | - | – | |
| PANTHER | 22 | 392 | 371 | 2.8E-120 | ||
| Gene3D | 35 | 302 | 268 | 4.9E-27 | ||
| SUPERFAMILY | 37 | 359 | 323 | 6.87E-27 | ||
| SMART | 67 | 108 | 42 | 0.0051 | ||
| Pfam | 72 | 108 | 37 | 0.0079 | ||
| ProSiteProfiles | 74 | 204 | 131 | 17.034 | ||
| ProSiteProfiles | 74 | 117 | 44 | 11.812 | ||
| SMART | 111 | 151 | 41 | 1.5 | ||
| SMART | 154 | 195 | 42 | 0.0049 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi1g1v0765800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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