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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0767100 |
| Transcript ID | LotjaGi1g1v0767100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Arginine-glutamic acid dipeptide repeats; TAIR: AT2G47820.1 arginine-glutamic acid dipeptide repeat protein; Swiss-Prot: sp|Q80TZ9|RERE_MOUSE Arginine-glutamic acid dipeptide repeats protein; TrEMBL-Plants: tr|A0A0R0KMJ8|A0A0R0KMJ8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0767100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:133978182..133984363) extracted from Lotus japonicus Gifu genome v1.2.
GTAGAATTTGCTCTCTTTATTCTTGATTACTTATTTTCTTGGTCCTCTCACTCTCTGTCTCTGTCTGTCTCTGCCTCTCT CTCTCCCTCATACAATTTTGTTGTCATGAAAGCTGAGCAACCATGTTTGTGATGATATGATAATAAAACCAGGTAGTAAT TTCTTAATCTATTAGTATTATTATTATATCACGTACTAATTCTTCTTCTGATGATTTATTTTTCCTTTAATGTCTGATGT TAGAATTATTATTTTCATTTTTTCAGTTTTCATCATCATCATCACCACCGCACCAACGAAGAAATAAACCACGTTGACAA TCGAGGTTTATTCCAAGACCCATTTCCCCAGGTCGATTTTCACACGTGGACCTTCTTCAACCTATTCTCCTCAAGGTTCC ATTCCTTCTAATCATTACTCTACAATCTACATGCTTTCTTTGCATTCCTCTTTCTTTCTATGTAGTATATTTCTTTCTTA TGCTTCCACTGTTCTCATAAAATTCTGTTACTGCTGTTAACTTCGATGTTAATTTTCATGTGTTTGCCTCTGAATTATCA TAACAACCCATTGTGATTCCGATTGTGATTGCGATTGTGATTATGATTGGTTCGATAATTTTTACTTGCTTCACTTCATT ATATGATTTATGAAGGTAGTAGTTTTTTTTTTATTTTTTATTTTAGATTTCATTCGATACTGAAATCTCTTAATTGCTTA CTTGTTTACTGTTTAATCACTCTCAGTGTTGATCTGGATTTGAAATTGGATGTGGATAACTAACTTGTGCGGGGTTTCAG TGATGAGATTTTCAGAATTCACATCACCTTTTTCTATTGCCCTTTCGTTCAAGAAACGCAGTGCTGAACTTCTGAAATTG TATTTTATTCAGTAATGCATTATCAAAGTGATTGAATTTTATTATATCGTGAATGTTCAATTTCGTCTCTGAAAGTTTAA GCGTTTGACCACCTAGAAGAAGGAAATACCTGAGGTCCCTGATTGTGTCAAATTTTGACCGGGACTAACTTTATTGACGT TTTATCTGACCATCGGAACTAACTTGACTGACATTTGACACAATAGGGGACCATGGAGGTATTTACTTCTTCTAAGACTA ACTTGTCCAAAGCTTACACTTTCATGCACGAAATTGAGCATTCACTTTTTATCATATTGTATGAAAATGACTACAATTTA ATTGTTTGCATATTGCTTTAGTTTTGTTCATGAATATTGTGAATGCTTGAATTACTTGGCTTAATGCTTTGGTGATGAAA TTGTTATCCGAATGCTATTGTTAGTGATTGCAAAGTAGAGAAAGGTTAATGTATTAGTCCTTTTCCAACTTACTGTTCAA TATTTTCAGATGGATTCTCTTTGCTTTGATGACAACAAAGGAAACACTGAAATGAAATCTGTTGAAGAAGATCTCCATGG TGTGGATGATAAATTTGGAGATCCAGAAGTGCTCCCTCGCGTTGGAGATGAGTACCAGGTAGAAATTCCATCACTAACTG CAGCACCTTATCTTTCTCAGCTTGCAAAGAAGACAAAAGATTCAGAAATCAGGGTCAATGTGCCAGAGCCTTTTTCACTA GGATTGCCCATACCTATTATGTGGGCACATTGCAGTTTTGGTTGTGAGAATTCAGAATCTGTCACAAGTGGAGAGGGGAA AGTTAGTTCTGAGCATGAATGTACAAAAGTTAAAGGGGGAAATTTGGGAGGATTTTCAAATTCCCAAAATTCTTCTAAAA GTGATGAGACAGATATTGACTCATGCAAGGGACTAAAAACTGAACTGAATCAGCCAAGAGGCAAGTATCTTCTCCCTGGA TTGTTGGATGACCAACCTTGGACAGATATTGAATATGACAGTTTTCTTCTTGGCCTCTATGTATTTGGGAAGAACCTTAA TTTGTTAAAGAGATTTGTTGGGAGTAAAAAAATGGGAGACATATTGTCTTTCTATTATGGGAAGTTTTTCAGGTCTAAAG GGCATTCCCGATGGTCAGAGTGCCGGAAGTCAAGAACAAGGCGGTGTGCGCATGGCCAGAAAATATTCATGGGATGGAGG CAACAAGAATTTCTGTCAAGATTATTTTCTCACGTGCCAGGAGAGTGTCAAACTCTATTGGTTGAGGTATTTCTGTAAGA CTGACATATAACATGTTTGGATCAACTTATCTTTTCTCAGAATCAATTCTGGCACCTAGAAGCTACTCGCAGAAGCTTCT AACCAGAATTGATTTTGGATTTAGAATCTATTCTAAAAGGATTTCCAAACATGCACTTACTTTAGTGTGTGCTATTCGTT ATCATACATATTCTGAATGCAAAGGACTTGGCAGATAAATGTGCACCTGGTTTAGAAATGTTCTTGCAGGATTCAAAAAT TCAACAGATTTATTTTCATTGTCATTGACCTTGCTAGTGGCTTCAAGTTATAACAATAAAAATTATTGATATAAGAAATC CTTTTGTCAGTGTTACTGACATGTATATTAGTTCAAATATTACATCAACAAGTTTAAGATTTTATTGTCATGCTAAGAAA GAATTGAAAAAAAGACAATTTCTCCAACTTCTATTTTTTACATATCTGTATATTTAAGTCATATACACATAGCTGTTTCA GTCTTCATTACTGAGAGATAGATTATTGCCTTTTAAGAATTTGTCTGTTAGCTTCTGGAAACTTGTATTGGATCTGCTGA CTATTTTATAAAGTAGTTTTGCATGAAGAGGCTGAGGAAATGCTAATAAGTGAACTTGTAACCAATGAAATTGATTTAAA ATAAACACCATCCTGTCAGCAAGTAACTTTACTAATTTATGGATTGCCGTGATCCTTATTGACAATCAGCAATGCTATGC AGTAGAAACTTCAGCAACTTTTGGCTGTTACAATGGTAATGAAAGCTGCACTGTGAATAGATATACTAATTAATGGAAAA TTTGGACAAAATTATGACATGAGAAAACGGGTATGGTGATGCTAAATTAGGTAATGGTGTAATGTGATGCTGACAATTTC CTTATAATCAGGCATTTTATATTCTTGGAAGAGACTAACAGATGACAATTACCTTTGTGAAATTTGATATTGTGATCAAG GCTGAGTTAGCAACATTTTCCTGGAACTTGAACTTTCCATGGTTGTTCTGTGTGTTTCCAAGACCAGGACCTTAAACATC AACGTTTTCTCTTCTCGTGGAAATGTGTGGGTGATTTTAGAACTATATATCAAGTCTCGAGCATACTTCCTGTCTTTTAC TGTTATCCCATCAGACCAAGTCCTTTACTAATACATTCTCATTGAGTACTTTGGGGCTATCTATTTTATTTTCCAGAAAG AGTCCATCACATGCTTAACAAACATGAAGATCCCTTCTTTATTACCATTGGAAAATTAAACTATTTAGCAATAGGTTTGA TTGAAGATTTGTTTAGATCGCTGTTATGTTCTGAAGTTTAGAGTACTGGATAGTGGATATGCAAAGAAAGTCTTCAATAA TTTCATTAGGACTTTAAACGAAATATATTTATGGTTTCAATTATGAACTTCTCTTTTTACATCTGTTGTTGAGGTACGTC TATTAACTTACCAACCAGGAGAGTATTCACTAGAATGAATTACATCTGATGTGTGTCTTCGTTCACATTCTATTCAGTTG CATTTGTTGTTTTTCTGTCATGGTCCAAGCGTTGTCAAATTTGACATTGCTCACAAACTTTTTAATATCAGTGATGTTCA TTATTTTTCTTTTCTTAAATAATAGTATACACGCTATCTTCTAACTCTCTCCACAATTCACATGGATATTACAGAATATG CTAAGCTGGCTCTAACATCTTATGCTTCTATAAACCCATGTATTGTCTAATCATAACAAGTGTTTTCTAAAATCATGTAA ATACTACTTACTGCAGATTTCAAGGAATTTTGTGGAGAAAAAAATACTATTTGAAGAATACATATTTGCGCTAAAGGATG CTGTTGGAATTGAATTGCTTATAGCTGCAGTAGGTATTGGCAAAGGGAAGCATGATCTCACTGGCACTGCTGTTGAGCCA TCGAAGACTTATCACGTCTCTGTTCGCCCTGAACTACCCATCGGCAAAGCCTGCTCCTCTCTTACATCTGCAGATATAAT CAAGTTTCTCACAGGAAATTTTAGATTAAGCAAAGCCCGATCCAGTGATCTCTTTTGGGAAGCTGTTTGGCCTCGCCTTT TAGCAAACGGTTGGCATTCTGAGCAACCTATGGATCAAGTTGTTTCTGGATCAAAACAATCTTTGGTTTTCCTCATACCT GGTGTTAAGAAATTTTCAAAGAGGAAACTGGTAAAAGGTAACCACTACTTTGATTCTATAAGTGATATGTTGAATAAAGT AGCTTCTGATCCTGGGCTTCTGGAGACAGAAATTCAAGCAACTGAGGGTAGTTCAGATGGGGGAAAAAGGCAAGACAAAC GAGATGTAGATGGTTTGCCGAATGGGCAACAATGTCATTACCTTCAATCTCGTTCAAAGTGCAATGAAGATCTCGCGAAA CTCACAATTATAGATACAAGCATGGTTCATAATATGGATCAACGGAAAGTGAGACAGATGAGAAGCTTATCTTTTCAAAC CATGAGTATATCTATCATCTCAAGCTGCTCTAGTGAATCTGAGCGAGATACATCTGAAGACTCTGAAGATCAGCTTGAAC AAGCTAATCCTTCAAGCCCTATTGTAGATCAGGTTGAACAAGCTAATGCTTCATTTACTATAGAACATCAGGTTAAACTT GCTAATTCCTCAAACCATGTGGAAGAATTCCCTGATAAGGGAATGAGCATAGACTCATCAGAGTGTACTCACATTCCCGA GGCCCTCAACACCTCCAAAGTAGAAGCAGAAAATCATAAATTTTATTCTGATCTTGTTCATGATGAGCATTCAAGGGAGA TCAATGCGAATCACTTGATTCAGAAGATGACATCTGATTGCACACAATATTTTCCCTGCGATGCAGAAATGCAGAAGCTA AGAGCTTGCAACCATGGAGAGTCTAGCCACAGCACTGGAAGTACTTCTGTCGAAAGAAAGTTTGATTTAAATGAACCGGT GTCACCATCAGATCTGCTTGAAGCATCTGAAGACATGATTTTTTCTGTGGGTTTAGAAAATCACACAAGTTCTCAGGCTA AAGACAGTGTCACTGAGAACCACATGGTTGGAGAAGTTTCTGCAGAAAATTCTGAAACCAGGATGTTGATTGACTTGAAT TTTCCTCAGGTTTCACCTGAATTTGGTATTGACTTGGAAATTCCATCCTCACAAAATGACAACCAATGTGCAAATACATT GTCCTCTCAATCTGAGATAACTCAGCTCAATGCTATGCATGATTTTCCTGATGATAATAAGGAGCAACAATCTACTATTG TCAACCGTCGCCAGAGCACAAGGAACCGGCCATTGACTACAAAAGCCTTGGAAGCTCTTCAGTACAGATTTCTCAACTCA ACAAAGAGGAAGAGGAAAAACACTGAATCTTCAGAGAATAATTCAAAGTCTCAATGTTTGTGTGTAAATAGTGGGACAAT TATTAGTGCTTCTTGTGATAACAGCATTGGAAATTCTATTGCTGACACGAGCGGAGGAGGAGAATATTATCAGGGGATGG AGCTGTAGCATCGATCTGAATAGAGGCTCACTATGATTTGTGAAGAGGTTAAGCTAGCTTCTTCTTGAGGGGTTTCAAGT TCATAGAATTTCTGGTTTTGAGGTTAAACTGGGTATAATTTCATTGTTTCAATTGTATCCATAAACCATAACTATACATG AAGATCATAGCTATCAGTCTATATTCACTTACTTCTTTTTTTTTCCTCTCAGAAATAGAATGTCACTGATAGGATAATAA ATAGCATAAGATTTATCATATGGTTAATGATTTTATCATAGCTATCAGTCTATATTCACTTACTTTTTTTTTTTTACTAA TTTTTAGTATCTTGGTTGTGTCCTACAAAGTTTTAAGCCTAACATAAATACCAAAACTACCAAGATTGACTAATTTCCTC GCTGCGTGGGTTTGCACTAAGCAATAAACGACTATCATGACCTTATAGTTATTAAGGATCATATCTCTGACCTAATAGAT AAGAGATGATGCAAGCAACCAT
CDS sequence (LotjaGi1g1v0767100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATTCTCTTTGCTTTGATGACAACAAAGGAAACACTGAAATGAAATCTGTTGAAGAAGATCTCCATGGTGTGGATGA TAAATTTGGAGATCCAGAAGTGCTCCCTCGCGTTGGAGATGAGTACCAGGTAGAAATTCCATCACTAACTGCAGCACCTT ATCTTTCTCAGCTTGCAAAGAAGACAAAAGATTCAGAAATCAGGGTCAATGTGCCAGAGCCTTTTTCACTAGGATTGCCC ATACCTATTATGTGGGCACATTGCAGTTTTGGTTGTGAGAATTCAGAATCTGTCACAAGTGGAGAGGGGAAAGTTAGTTC TGAGCATGAATGTACAAAAGTTAAAGGGGGAAATTTGGGAGGATTTTCAAATTCCCAAAATTCTTCTAAAAGTGATGAGA CAGATATTGACTCATGCAAGGGACTAAAAACTGAACTGAATCAGCCAAGAGGCAAGTATCTTCTCCCTGGATTGTTGGAT GACCAACCTTGGACAGATATTGAATATGACAGTTTTCTTCTTGGCCTCTATGTATTTGGGAAGAACCTTAATTTGTTAAA GAGATTTGTTGGGAGTAAAAAAATGGGAGACATATTGTCTTTCTATTATGGGAAGTTTTTCAGGTCTAAAGGGCATTCCC GATGGTCAGAGTGCCGGAAGTCAAGAACAAGGCGGTGTGCGCATGGCCAGAAAATATTCATGGGATGGAGGCAACAAGAA TTTCTGTCAAGATTATTTTCTCACGTGCCAGGAGAGTGTCAAACTCTATTGGTTGAGATTTCAAGGAATTTTGTGGAGAA AAAAATACTATTTGAAGAATACATATTTGCGCTAAAGGATGCTGTTGGAATTGAATTGCTTATAGCTGCAGTAGGTATTG GCAAAGGGAAGCATGATCTCACTGGCACTGCTGTTGAGCCATCGAAGACTTATCACGTCTCTGTTCGCCCTGAACTACCC ATCGGCAAAGCCTGCTCCTCTCTTACATCTGCAGATATAATCAAGTTTCTCACAGGAAATTTTAGATTAAGCAAAGCCCG ATCCAGTGATCTCTTTTGGGAAGCTGTTTGGCCTCGCCTTTTAGCAAACGGTTGGCATTCTGAGCAACCTATGGATCAAG TTGTTTCTGGATCAAAACAATCTTTGGTTTTCCTCATACCTGGTGTTAAGAAATTTTCAAAGAGGAAACTGGTAAAAGGT AACCACTACTTTGATTCTATAAGTGATATGTTGAATAAAGTAGCTTCTGATCCTGGGCTTCTGGAGACAGAAATTCAAGC AACTGAGGGTAGTTCAGATGGGGGAAAAAGGCAAGACAAACGAGATGTAGATGGTTTGCCGAATGGGCAACAATGTCATT ACCTTCAATCTCGTTCAAAGTGCAATGAAGATCTCGCGAAACTCACAATTATAGATACAAGCATGGTTCATAATATGGAT CAACGGAAAGTGAGACAGATGAGAAGCTTATCTTTTCAAACCATGAGTATATCTATCATCTCAAGCTGCTCTAGTGAATC TGAGCGAGATACATCTGAAGACTCTGAAGATCAGCTTGAACAAGCTAATCCTTCAAGCCCTATTGTAGATCAGGTTGAAC AAGCTAATGCTTCATTTACTATAGAACATCAGGTTAAACTTGCTAATTCCTCAAACCATGTGGAAGAATTCCCTGATAAG GGAATGAGCATAGACTCATCAGAGTGTACTCACATTCCCGAGGCCCTCAACACCTCCAAAGTAGAAGCAGAAAATCATAA ATTTTATTCTGATCTTGTTCATGATGAGCATTCAAGGGAGATCAATGCGAATCACTTGATTCAGAAGATGACATCTGATT GCACACAATATTTTCCCTGCGATGCAGAAATGCAGAAGCTAAGAGCTTGCAACCATGGAGAGTCTAGCCACAGCACTGGA AGTACTTCTGTCGAAAGAAAGTTTGATTTAAATGAACCGGTGTCACCATCAGATCTGCTTGAAGCATCTGAAGACATGAT TTTTTCTGTGGGTTTAGAAAATCACACAAGTTCTCAGGCTAAAGACAGTGTCACTGAGAACCACATGGTTGGAGAAGTTT CTGCAGAAAATTCTGAAACCAGGATGTTGATTGACTTGAATTTTCCTCAGGTTTCACCTGAATTTGGTATTGACTTGGAA ATTCCATCCTCACAAAATGACAACCAATGTGCAAATACATTGTCCTCTCAATCTGAGATAACTCAGCTCAATGCTATGCA TGATTTTCCTGATGATAATAAGGAGCAACAATCTACTATTGTCAACCGTCGCCAGAGCACAAGGAACCGGCCATTGACTA CAAAAGCCTTGGAAGCTCTTCAGTACAGATTTCTCAACTCAACAAAGAGGAAGAGGAAAAACACTGAATCTTCAGAGAAT AATTCAAAGTCTCAATGTTTGTGTGTAAATAGTGGGACAATTATTAGTGCTTCTTGTGATAACAGCATTGGAAATTCTAT TGCTGACACGAGCGGAGGAGGAGAATATTATCAGGGGATGGAGCTGTAG
Protein sequence (LotjaGi1g1v0767100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDSLCFDDNKGNTEMKSVEEDLHGVDDKFGDPEVLPRVGDEYQVEIPSLTAAPYLSQLAKKTKDSEIRVNVPEPFSLGLP IPIMWAHCSFGCENSESVTSGEGKVSSEHECTKVKGGNLGGFSNSQNSSKSDETDIDSCKGLKTELNQPRGKYLLPGLLD DQPWTDIEYDSFLLGLYVFGKNLNLLKRFVGSKKMGDILSFYYGKFFRSKGHSRWSECRKSRTRRCAHGQKIFMGWRQQE FLSRLFSHVPGECQTLLVEISRNFVEKKILFEEYIFALKDAVGIELLIAAVGIGKGKHDLTGTAVEPSKTYHVSVRPELP IGKACSSLTSADIIKFLTGNFRLSKARSSDLFWEAVWPRLLANGWHSEQPMDQVVSGSKQSLVFLIPGVKKFSKRKLVKG NHYFDSISDMLNKVASDPGLLETEIQATEGSSDGGKRQDKRDVDGLPNGQQCHYLQSRSKCNEDLAKLTIIDTSMVHNMD QRKVRQMRSLSFQTMSISIISSCSSESERDTSEDSEDQLEQANPSSPIVDQVEQANASFTIEHQVKLANSSNHVEEFPDK GMSIDSSECTHIPEALNTSKVEAENHKFYSDLVHDEHSREINANHLIQKMTSDCTQYFPCDAEMQKLRACNHGESSHSTG STSVERKFDLNEPVSPSDLLEASEDMIFSVGLENHTSSQAKDSVTENHMVGEVSAENSETRMLIDLNFPQVSPEFGIDLE IPSSQNDNQCANTLSSQSEITQLNAMHDFPDDNKEQQSTIVNRRQSTRNRPLTTKALEALQYRFLNSTKRKRKNTESSEN NSKSQCLCVNSGTIISASCDNSIGNSIADTSGGGEYYQGMEL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 12 | 825 | 814 | 2.9E-229 | – | |
| PANTHER | 12 | 825 | 814 | 2.9E-229 | – | |
| ProSiteProfiles | 159 | 210 | 52 | 9.187 | ||
| SUPERFAMILY | 163 | 209 | 47 | 4.87E-5 | ||
| MobiDBLite | 427 | 451 | 25 | - | – | |
| MobiDBLite | 502 | 526 | 25 | - | – | |
| Coils | 842 | 842 | 1 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). |
Expression pattern of LotjaGi1g1v0767100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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