Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0770500 |
| Transcript ID | LotjaGi1g1v0770500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | F-actin-capping protein subunit alpha; TAIR: AT3G05520.2 Subunits of heterodimeric actin filament capping protein Capz superfamily; Swiss-Prot: sp|O82631|CAPZA_ARATH F-actin-capping protein subunit alpha; TrEMBL-Plants: tr|I3SNV9|I3SNV9_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0770500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:134272009..134276491) extracted from Lotus japonicus Gifu genome v1.2.
CTAGTTTACTTCTTCCATTGAAATAATATTCAAAATCATTTTATTGTATTATATTATCAAATTTACACTCTCATTTTCAG ATCAATGTCAATTATTATCATCTAGAGTGTGAAGCGTGATTGTCGACCAAAATCATAATCTCTCAACATGAGGGGGACGC CACTTTATTATAGATCAAACACTAGACACTGCACACTACACAACGAAGTGTTAAGTATGATTATTGGACGGTTGGGCCCT AATGTCTTCGATCGTGGAGCCCACATCATGGACGGTCCCGATTGCCCAGAAACCTTTTCTCTATTATTCAGAATAAACGA AGCGAGATCTTCATTCATTCGTTCATTGTTTTGTTAATAACTGCAGTTGCATTTTCCATTTCTCCTTTGAAGAAAGAGAT ATAAAAATGGCGGAAGAAGAAGAAGAAGAATCAGAGCTGAGCGACAAGCAGAAAGTTGAAATCGCCAAATGGTTCCTCCT CAACTCTCCCCCTGGTGAAATCCAATACGTTGCCAAAGGTTCTTCTTCTTCTTCTCTCTTCCTCTTCCTCCCTCTTCCGC ATTTGCATTTTTTCCCCTCTTTCCCATGAATCTGAACCAACTCCGTTGAATTCAATGTTTCTGCAGATGTCAAATCCATT CTCAACAACGACGATTTGTTCAACGAGGCAGCTACCGAGGCATTCCCCGTCTACAACCTAACCCACTTGATTTCCCTTCA ACTCCCCAACCGAACCGGAGACGTAACTTTCCTTCCAACTTAGGGTTTCCTCATTCATTTTCTTCATTTTTCTTATTAAG ATCTTTCAATTCATTCATTGGATATGGTTTTTATTTTTGTTTTTTTTTATCTTGTTGTGTGAATATGATGAATCAATGTG TCTTCTATATCCGATTTTTTGTGAGTTTAATCACTGGCTTAACGCGTGCATGCAGGTACTGGTTACTTCATTTGGTGAGC TTGAGGGGAATGCATTTCTTGATCCCAGGACTGCCCAAGTAGCAGTAGTTGACCATGTTAAACAAGTGAGTCCTCTCTCT GCCTGACCCTGTGTGGATCAGTCAAATGATGAGTGTGTGTTGGGGTGAGCATTTACAAAAATAGATTTTGAATGATTAGA ATTTTGGATAAAATTGATTTCGAAATGAAAGTGATTTATGTTTAGATGTTTATTTGTTTGTTATAAGCTTGGCGTGAAGT TTCCAACTTCAGCTGGGGTTTGAAGGTGAAATCAATTCAGATGGTAGGTTTGCATTGAGGGCTAGAACCGTGTATGTGTT TGTTTGCATTAGCTTAAGCTTAACGCGATTCGTTACTATATGCGACTTTAGTACCATTCTGCAAACATGCGCAGACTCAA AGTAGCGAAACATCTTGGTTTTTGACAAAATCACGTCTGGCTGGAGAAAACTCATGCTTGTACACTCCCATCACATATAC AAATCATAGAATGATCAATGTTCTAAAAGGGTGGGCTTGGGGTGGGGGGAAGTTCATCACTAATTTTTTGTTTTGAATAT TACATATTTTCGTCTTTTGAGATAAATCTGGTTAAGTGTAATTGTGTGAAGTTTTTTTACCTATTGTCTTATGATAGTCT GCTAAATGTCTTAGGTTTGTACGGATGTGAGACCTGCAGCAGATGAAGAACTTCCATCTCCATACATTGAAGAATTTCGG TAATGCTCAGCCATTTCCATGACAGATATATTTTGTCTCTGATCATCTGATATGATATTCCTCTACTTAAGTGATTTTCA AAATGTTTTGTGAAACTGAGGAAAGGAACAAACTGTTTCAAGTTAAACAAATTTCAATAAATTTATCCAATTTTAAAATA AAGCTATTATTTTTTGTTGCTTTATTTAGTTTGTTATTCCTCAACTTTTGGCTGTATGAAGTACAAACTCAAGAGCGTTT TCTTTTCACAGTAGATTGCCTATGGGATTTCTTCTATGTTTTGTCATATACTGTTCTAGATTCCTGGTCTCCATGCAGCT GTTTTATTGAGAACGTGTAGCCCTATTTTAGATGGGAAGAGAGACTCATACAAGTGATTGTTTATATCTGCTATTTATTC CTTATTTTATAATAAAAACCTGATTGGACGCATTTGAGGACATGAAAAAAAACAGATTAAGAGTAGTTTGAGTAACCATA CTATATCTTTCTCATACTCTATGCTTGCATAACACATGGTTTGCTTATTGCAGATGCAGTCTGGACGCAGAAATACTTAA ATATGTTGAAGAAGCTTATCCAAAAGGGGTCTGCTCTGTCTACTGTGGAAATGGGAAAGATGTTGAGGGCCCAGGTTGTG ATTTTGAGCTTGCTGTGGTGATTTCTGCTGCTAGGCATAGCCCACAAAATTTCTGGTACGTGAAATTAGTTGAGTAAAAT TCTATCTGTTCTATTTGAGGACTAATTTCAGCTGCAGCAGTTACACCAAAAGAACATTGATACATTTTAATATTTTCTTT GGCTTTTGTTTATAGCAATGGGAGTTGGTGTTCAACATGGAATATTGAGTTCAAAGGTGATAATCAAACAGTGGAATTAA AGGGTAAAATGCAGGTAATATTGCATAGATATTTGATGCATTGATTTGAATGATTCAGTAGAAGCTTTTATTAACACGGT TATTTTTAACCTATTTTCAGGTGGGTGCCCATTATTTTGAGGAAGGAAATGTGCAGTTAGATGCAAAACATGAATGCAAA GATGCAACTCTTTTTCAGGTTACCATAGATCAGTATTGTCATTTCCTTTACATTTTATTTAATTAGGTGTGAATTTATTG CTTAAGTTATATGTATAATTGTATATGTCCTTACATATGCTTTTTGCAATGGAAGGTACTGCCCTTCCTTGTTTTCTGTT CCATGGGATGCAAGGCAGAGAGCATTTTAAGAACTTTCCATGATATATAAAGGATAGGATATGTATATGTGATATGTATA GAAAGACAATAGTTATCTATTCACATTTCTGTGCAAGTCGATTTACTCGTATTTCATCATTTGATTTTATTTTCAGGCCC CTGAGGATTGTGCGGTTGGCATATCAAGCATTATTCGTCATCATGAAACAGAGTACCTTGCTTCTATAGAGGTTCTGAAT TTGTTTTCTTGTTGCTTGGATCTTTCTTTCCTTTTTAACAATGTTTAGATAATTTGCTAACGACCATAACTTTGCAGGCT TCATATCTTAGCCTCCCTGATTCTACTTTCAAGGTACTTTTTTGTTATATCTTCTAAAATGTGTTCTTTTTACCTTCACT TTGACTTTTCAAATGTGGCATTTCTGCGAAGTCTATGAATTATGATAGTTATTGATTCCCATTAAAGCAATCCCATATAC CTAATGTTTTCAGATGTGGTATTTCTGCTAAGGCTATGAATTAATATAGTTATTGATTCCCATTAAAGCATCCCATATAC CTAATGTTTCCTCGTTAGGCCCTTTGTCACAACCAAGACCAAAAGCACCTCTAAGATCCTTTTGTTTGTTATTCTTTTAC CAACTGGATCAATCCATTTTATTGTTCTATCATGTTATGCTGCATCTGTGGTTAGCCGTGAAATTCCTAATGCTTGCAAC AATCAATATCATATTCAGTTCATTCTAAGGGTTTGTTCTTACATTGTGGAAGCTATGTGTAGTTATATAAATTATAACTG TCTTAATCATCATGCCGGAGTGTGTTCAAGCAACAGAAATAATAAAGTGGGCAGACACATTTCTTGTTTTGCATGAGTGT TAAATCTACCGCATTACCTGTTTGAATTTGAAGCCTTCTGATTGCAATTATTTTCAGGATCTTCGGAGGAAGCTTCCAGT CACCCGCACCTTATTTCCATGGCATAATACTTTGCAATTCAGCTTGACAAGGGACATCTCAAAGGAACTTGGCATCGGAA AGTAAATACATGCACACATACACAACACAACAAAGAAAAGATGTGTTTACTTGAACTTGGTGGTGACAAGTTCACAATAT GTAATTTGATCAAGTCAATCATTCTTAGGGGTTGGCTTTGACTTTCTTCCTTTGTCCGAGTCTCCTCCGCATGTGTACTG TACTGTAATTCTTTTTCAACATTGTTGTATAGCAGTAAAGAGTTACGCTTGTTCTAGCCATTACAACTTTTTGTGACTGC AATTACTGTGAGAACTGGTTTTACGTTGGGTTTGGGGGGGGGGGGGGGGGGGGGTTGGATTTTGAAGGAAAAAAATTCTG GTGGTGGTTTGACATAGATATTAGTACAACCATGGTATAAAATCAGTTCCCTTGAATAGTGTGAATGAATCAAGTTCTTT CTTTCTTCAATATTGTCATGTGAAAAACAGATCCTCTTGGATATGTACTTTATGTTGTCTTATCCTATTTAATAGGTGGA ATCATATGAATATTTATGCGGTGAGAGATAGATAAACTTTTATATGACATTATCACATGACATGAGATGACCATAATCTC AAT
CDS sequence (LotjaGi1g1v0770500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGGAAGAAGAAGAAGAAGAATCAGAGCTGAGCGACAAGCAGAAAGTTGAAATCGCCAAATGGTTCCTCCTCAACTC TCCCCCTGGTGAAATCCAATACGTTGCCAAAGATGTCAAATCCATTCTCAACAACGACGATTTGTTCAACGAGGCAGCTA CCGAGGCATTCCCCGTCTACAACCTAACCCACTTGATTTCCCTTCAACTCCCCAACCGAACCGGAGACGTACTGGTTACT TCATTTGGTGAGCTTGAGGGGAATGCATTTCTTGATCCCAGGACTGCCCAAGTAGCAGTAGTTGACCATGTTAAACAAGT TTGTACGGATGTGAGACCTGCAGCAGATGAAGAACTTCCATCTCCATACATTGAAGAATTTCGATGCAGTCTGGACGCAG AAATACTTAAATATGTTGAAGAAGCTTATCCAAAAGGGGTCTGCTCTGTCTACTGTGGAAATGGGAAAGATGTTGAGGGC CCAGGTTGTGATTTTGAGCTTGCTGTGGTGATTTCTGCTGCTAGGCATAGCCCACAAAATTTCTGCAATGGGAGTTGGTG TTCAACATGGAATATTGAGTTCAAAGGTGATAATCAAACAGTGGAATTAAAGGGTAAAATGCAGGTGGGTGCCCATTATT TTGAGGAAGGAAATGTGCAGTTAGATGCAAAACATGAATGCAAAGATGCAACTCTTTTTCAGGCCCCTGAGGATTGTGCG GTTGGCATATCAAGCATTATTCGTCATCATGAAACAGAGTACCTTGCTTCTATAGAGGCTTCATATCTTAGCCTCCCTGA TTCTACTTTCAAGGATCTTCGGAGGAAGCTTCCAGTCACCCGCACCTTATTTCCATGGCATAATACTTTGCAATTCAGCT TGACAAGGGACATCTCAAAGGAACTTGGCATCGGAAAGTAA
Protein sequence (LotjaGi1g1v0770500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAEEEEEESELSDKQKVEIAKWFLLNSPPGEIQYVAKDVKSILNNDDLFNEAATEAFPVYNLTHLISLQLPNRTGDVLVT SFGELEGNAFLDPRTAQVAVVDHVKQVCTDVRPAADEELPSPYIEEFRCSLDAEILKYVEEAYPKGVCSVYCGNGKDVEG PGCDFELAVVISAARHSPQNFCNGSWCSTWNIEFKGDNQTVELKGKMQVGAHYFEEGNVQLDAKHECKDATLFQAPEDCA VGISSIIRHHETEYLASIEASYLSLPDSTFKDLRRKLPVTRTLFPWHNTLQFSLTRDISKELGIGK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 303 | 303 | 1.1E-119 | – | |
| PANTHER | 1 | 303 | 303 | 1.1E-119 | ||
| SUPERFAMILY | 11 | 295 | 285 | 3.66E-81 | ||
| Gene3D | 11 | 118 | 108 | 1.1E-34 | ||
| Pfam | 20 | 298 | 279 | 7.0E-76 | ||
| Gene3D | 122 | 273 | 152 | 5.8E-48 | ||
| PRINTS | 176 | 190 | 15 | 1.8E-14 | ||
| PRINTS | 210 | 223 | 14 | 1.8E-14 | ||
| ProSitePatterns | 211 | 219 | 9 | - | ||
| PRINTS | 267 | 286 | 20 | 1.8E-14 | ||
| ProSitePatterns | 271 | 281 | 11 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | F-actin capping protein complex | A heterodimer consisting of alpha and beta subunits that binds to and caps the barbed ends of actin filaments, thereby regulating the polymerization of actin monomers but not severing actin filaments. | ||
| Biological process | Barbed-end actin filament capping | The binding of a protein or protein complex to the barbed (or plus) end of an actin filament, thus preventing the addition, exchange or removal of further actin subunits. |
Expression pattern of LotjaGi1g1v0770500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…