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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0772000 |
| Transcript ID | LotjaGi1g1v0772000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Zinc finger protein; TAIR: AT3G50700.1 indeterminate(ID)-domain 2; Swiss-Prot: sp|Q9SCQ6|IDD2_ARATH Protein indeterminate-domain 2; TrEMBL-Plants: tr|A0A0L9TYR6|A0A0L9TYR6_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0772000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:134448314..134452431) extracted from Lotus japonicus Gifu genome v1.2.
CTTAATATCAATCAATGCCAGGGGCTAATCCGTAGCATTAAGCAACAGTGCCTCGACCTCGAAGTATAATATATTTAATT GAAGTGCAAATCCTAAGTCCAGTTCTTGTATCCTTGTGCTTGGAGGAACTCTCATGTCCACACCATAAAAGGAGGCAGAG TTTTCTGGCTTTCTTCTTCCCCCAGTTACCAAAATCCCATCTTTTCTCTTTCAATTTCCTCCCATTTTTCTCTTGTGAGC AGCTGCAAGAACTAGAGCAGAAACAAACACTAACACTACTAGTTTGGAGAGAGAAAAAGTAGTAAGGAAATTGAAGGGAA TATTTTCAACAGATTCTTCCCTTATCAAAATTAGTTTAGCCTCAATGTCAAACATCACAAGTTGTGATAGTGGGAGCTTC TCTAGTGAGAATAACAGAGAAGATGCAGTTAAACAGAAATCATTGATTCTGGGCCAGCTCCATAGTCCAAATTCTCATAC TTCAACTACAACAAATAATAGCATCAATTCAAACACAAATTCAGAACTACCTCCACTAGTTAAGAAGAAAAGGAACCTAC CAGGAAATCCAGGTATCTTTTCTAATAACCATCTCACTTCCCTCAACTCTGTTTTTTTCTTTTCATTTAAATATTTATTA TTAGTTGTGTTTTTCCTTTTCTTTCTCTGTGAAATTTACTTGATTGCAAATCAGCAACATTTTTCTGATTGCTGATTTTA TTTATTTATTGATATGTAACATGTGAAAGGGGAGAATAATGAATTATCTGAACTTTGATCCTTATGTCCTCTTATTAAGT GAGGATAAGTACCATGGATATGTGTTTTAATTGAAAATTGGACAGAAAAGTTAACATGAAAAATTGTAACTTATGAGTGT GTGTATAAGTGGTGGAAAAAGCTCAATTATTGTCTGCAGAAGTTCTCAATCATTGCTGTTCACTGTTGACTTTGCTTCAC TGCTAGCTCAATCTCCACCCTTTTTCCTTTCTTTTTGTTTTTTCAAGTAAAGGACCATGTACCTTTGTATATGAACAATC CCTCTTGCTGGCTCTTTTTTCTTGTCTGTTCAAGATGCATGTCAAAATGCAAGGCGTGGAGAATATAGAGATTTTGAATT ATTTGAATCAAATTCAATATTCTCTTTCTTCGATTTATTATAAGATTTTGTTCTGACTTATCATGTGAACAAAGAATCCA TTATTACACATTTTTCTTCCTTGCTTTTAATTGGAAAATGTTGGATAGATAGATACCAATGAGATATGTGTTATGTGTCG ATACTGTTTAATTTCAGTGTCTAAAAATACTGTTTTGAATTGCATCATCATCTTAAAAAAAAAAAATTAGGCTTTAGCGC CATCTTAATAAAGTGAGGATCAGAATCTCTTGTCACACATCCTAATATTATTTATATAATTGTGGTGTGAATGGATCAAT TTTCTTGTGAGATGTGATGAAATGGAGTGAGAAAAAAATAGTGTTGTAGAAAATATTGTTATAAAATCAAGTGTTTTATG GTTTTCAAATCTCAAGTGAAGCAATTTGAATGTACTAGGACTAGCTAGGAAACATATAGCTTATAATATGTTCATGTTTG TATCTAACTTATTTTTTTTCATAATCAAATTAAACATCAAGATTTGAGAGATTACACAGTGGGTTTTTGGAACTACCCTG GCAAATCAAGCTGAGGTTAGAAAATCACGTTAAAGTGAACACACGCCTTCAACTAGGCACGGTTTGGAGTTTGGAGTGTG TGACTAACTTATTTCTAAACACGCTCACATAAATTAAAGCTTCTCTAAGAATTAATTTTCTTAGAGTAAAATTTTTTTCC AAACACATTATTAATTATTTTTGCGGCGTTGGCACGTGTGTGCAGATCCAAGTGCTGAAGTCATAGCTCTATCACCAAAC ACTCTGGTGACCACAAATCGTTTCATATGTGAAATCTGCAACAAAGGGTTTCAAAGAGACCAAAACCTCCAATTGCACCG GCGAGGCCATAACCTGCCATGGAAGCTTAAACAGAGAACCACCGCAGAAGTTCGAAAACGGGTTTATGTTTGTCCTGAAC CCACATGTGTTCACCACAACCCGGCTCGAGCACTAGGCGATCTCACTGGCATAAAAAAGCACTTCAGCAGAAAGCATGGT GAGAAGAAGTGGAAATGTGACAAGTGCTCGAAGAAATATGCAGTACGGTCTGATTGGAAAGCTCATTCAAAAATATGTGG CACAAAGGAGTACAAATGTGACTGTGGCACCATATTTTCCAGGTTAATATGCATCCAAGTATATTCATATTCATATATAG GTAATCCTGGTGATTATACGTGTACATATACATTTTAGCGAATTTCCAATCGACATATGGTTAATTGCCGTAAACAGTAG TCGATTGTCATGTCACTGAAATGAAATGTGTATGTACATACAACACATGTTTTTCTTCCATAATGAATATTGTTTAATGG TGTTTTTGGATTGTGTCTTTAATTAGCTAGCTATATAAATTTATCTGTACACACACTTTGACATCAATAAGTGAACAAAT ATTAAAATCCAATTGAGAAAAAAATCGTAATTTTGTACACAATTTGCATACATTAGCTAGGTCCTGCTCATATAAATGAT TCACTCCTGTTCCATTATAGAGAGAAATCGAAAGAAAAAATAGATTAAAATTAAAAAGAGAGTGTGTGTGAGTATATAAA AATTGCATCAATAGCTTATCTCTCATTCTTTTGAGCTCAAGACACCCACTTAATGTGAATTTTGATACATTCAGAGTTTC AGCTCATTTTCACTCTTCTTTTATGTTTCTTTTCCATATCACATGATCTATTATTCATATCTGCAGAAGAGACAGCTTCA TCACCCATAGAGCTTTCTGCGATGCACTGGCTGATGAGAATAACAAACAGAACGAAGGACAGTTATCAAATATGGGTCCA AACTTGCAGAACCAACCATTAATCCCAAACCTAGCAGCACCATCCTCATTGCCAATCAACACCAATGAACTTATGACAAT GACTGCAAAACCCTTCAACATTAACATGACTGCTGCACCCGGAACAACCACATTATTCTCTTCTCCGGCCTCTCTTCTTC AATTGGGGGGTAATTCAAACATATTAGACGAGGCCATGCTCCACAACATGGCCTCACCTCACATGTCAGCCACAGCGTTG CTGCAAAAAGCTGCTCAAATGGGTGCAACAGTGAGTAGTAATAATAACAGTGGCATGGCACCACCATCACAGTCATATGG TATCATGAACCAGCATGTGCACATTAATGGTCAACATGACATTAACTTGTCGTCTCAGTACGACTATAACGGGATGGTTA GTTCAGGAGCTACTGCTGCAGGTAGTGTTGTTGGGATGAGTGGTTTGGAGATGTTCAATGCTATATTGGATCAGAGTAAG GCATTGTCGAGGATCATAGCGCAGAATAGTACTACTGCTCGAAGCAGCAACAGTTTGCATGGTCAATGTGATCCAATTAC GAGTGGTGGTGGTGGCAGCAATAATGTTCATGTTAATGGTGGAAATGAAGATGTGATGACTTTGGACTTGCTGGGAATAG GAGGAGGAGGTGGTGGTGCGCATGGCGGTTTCTATGGCGGTGGAGATCAAGGGCGGTCAGAAAGAGATCATGATGATATG TGGAGAAATTGGTCAAACAAGAACACCGGGTTTGAATCGTTTTCGGCAACAGGCAGCATTTGAGTTCTGATCATATGAAT TACATTGTCTATTTTGGGAGGGTGGAATATTTTTCAGCTGAGTAGTTGGGTTTTTTTATGCTAAAATTCTCTTGACTGGA CTCCTCTTGTCTCTTAAATTAGTGTTCAATAATGTTAAAATTTTAAAATCGCCCCTTACCATTTCAATCATTTTCATCTA ACAAACTCACATTAAATCTTCATCATCACACTCTCCTGTGAATGAAGTGGAGAAAAGAGAGATCAGATAGGAAGAAAATA AAGAAAAAATAAGAGATTTGATAGATGATGATGATTAAAAAATAAAAGAGATAAGAGATAGATAAAAAGTACGTGAGAGA AGAGTCATAGCTCCAACTTCACCTAAGTGAAATGTTTT
CDS sequence (LotjaGi1g1v0772000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCAAACATCACAAGTTGTGATAGTGGGAGCTTCTCTAGTGAGAATAACAGAGAAGATGCAGTTAAACAGAAATCATT GATTCTGGGCCAGCTCCATAGTCCAAATTCTCATACTTCAACTACAACAAATAATAGCATCAATTCAAACACAAATTCAG AACTACCTCCACTAGTTAAGAAGAAAAGGAACCTACCAGGAAATCCAGATCCAAGTGCTGAAGTCATAGCTCTATCACCA AACACTCTGGTGACCACAAATCGTTTCATATGTGAAATCTGCAACAAAGGGTTTCAAAGAGACCAAAACCTCCAATTGCA CCGGCGAGGCCATAACCTGCCATGGAAGCTTAAACAGAGAACCACCGCAGAAGTTCGAAAACGGGTTTATGTTTGTCCTG AACCCACATGTGTTCACCACAACCCGGCTCGAGCACTAGGCGATCTCACTGGCATAAAAAAGCACTTCAGCAGAAAGCAT GGTGAGAAGAAGTGGAAATGTGACAAGTGCTCGAAGAAATATGCAGTACGGTCTGATTGGAAAGCTCATTCAAAAATATG TGGCACAAAGGAGTACAAATGTGACTGTGGCACCATATTTTCCAGAAGAGACAGCTTCATCACCCATAGAGCTTTCTGCG ATGCACTGGCTGATGAGAATAACAAACAGAACGAAGGACAGTTATCAAATATGGGTCCAAACTTGCAGAACCAACCATTA ATCCCAAACCTAGCAGCACCATCCTCATTGCCAATCAACACCAATGAACTTATGACAATGACTGCAAAACCCTTCAACAT TAACATGACTGCTGCACCCGGAACAACCACATTATTCTCTTCTCCGGCCTCTCTTCTTCAATTGGGGGGTAATTCAAACA TATTAGACGAGGCCATGCTCCACAACATGGCCTCACCTCACATGTCAGCCACAGCGTTGCTGCAAAAAGCTGCTCAAATG GGTGCAACAGTGAGTAGTAATAATAACAGTGGCATGGCACCACCATCACAGTCATATGGTATCATGAACCAGCATGTGCA CATTAATGGTCAACATGACATTAACTTGTCGTCTCAGTACGACTATAACGGGATGGTTAGTTCAGGAGCTACTGCTGCAG GTAGTGTTGTTGGGATGAGTGGTTTGGAGATGTTCAATGCTATATTGGATCAGAGTAAGGCATTGTCGAGGATCATAGCG CAGAATAGTACTACTGCTCGAAGCAGCAACAGTTTGCATGGTCAATGTGATCCAATTACGAGTGGTGGTGGTGGCAGCAA TAATGTTCATGTTAATGGTGGAAATGAAGATGTGATGACTTTGGACTTGCTGGGAATAGGAGGAGGAGGTGGTGGTGCGC ATGGCGGTTTCTATGGCGGTGGAGATCAAGGGCGGTCAGAAAGAGATCATGATGATATGTGGAGAAATTGGTCAAACAAG AACACCGGGTTTGAATCGTTTTCGGCAACAGGCAGCATTTGA
Protein sequence (LotjaGi1g1v0772000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSNITSCDSGSFSSENNREDAVKQKSLILGQLHSPNSHTSTTTNNSINSNTNSELPPLVKKKRNLPGNPDPSAEVIALSP NTLVTTNRFICEICNKGFQRDQNLQLHRRGHNLPWKLKQRTTAEVRKRVYVCPEPTCVHHNPARALGDLTGIKKHFSRKH GEKKWKCDKCSKKYAVRSDWKAHSKICGTKEYKCDCGTIFSRRDSFITHRAFCDALADENNKQNEGQLSNMGPNLQNQPL IPNLAAPSSLPINTNELMTMTAKPFNINMTAAPGTTTLFSSPASLLQLGGNSNILDEAMLHNMASPHMSATALLQKAAQM GATVSSNNNSGMAPPSQSYGIMNQHVHINGQHDINLSSQYDYNGMVSSGATAAGSVVGMSGLEMFNAILDQSKALSRIIA QNSTTARSSNSLHGQCDPITSGGGGSNNVHVNGGNEDVMTLDLLGIGGGGGGAHGGFYGGGDQGRSERDHDDMWRNWSNK NTGFESFSATGSI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 17 | 17 | - | – | |
| PANTHER | 1 | 260 | 260 | 4.9E-178 | – | |
| PANTHER | 1 | 260 | 260 | 4.9E-178 | – | |
| MobiDBLite | 1 | 20 | 20 | - | – | |
| MobiDBLite | 31 | 73 | 43 | - | – | |
| MobiDBLite | 31 | 57 | 27 | - | – | |
| Gene3D | 85 | 112 | 28 | 3.2E-5 | – | |
| SUPERFAMILY | 88 | 185 | 98 | 1.11E-7 | ||
| SMART | 89 | 111 | 23 | 0.022 | ||
| Pfam | 89 | 111 | 23 | 5.5E-5 | ||
| ProSiteProfiles | 89 | 111 | 23 | 10.845 | ||
| ProSitePatterns | 91 | 111 | 21 | - | ||
| SMART | 130 | 160 | 31 | 89.0 | ||
| Gene3D | 144 | 223 | 80 | 1.2E-7 | – | |
| SMART | 165 | 185 | 21 | 130.0 | ||
| PANTHER | 270 | 480 | 211 | 4.9E-178 | – | |
| PANTHER | 270 | 480 | 211 | 4.9E-178 | – | |
| MobiDBLite | 403 | 432 | 30 | - | – | |
| MobiDBLite | 459 | 493 | 35 | - | – | |
| MobiDBLite | 477 | 493 | 17 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. |
Expression pattern of LotjaGi1g1v0772000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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