Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0772200 |
| Transcript ID | LotjaGi1g1v0772200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Arginine-glutamic acid dipeptide repeats; TAIR: AT1G09050.1 arginine-glutamic acid dipeptide repeat protein; Swiss-Prot: sp|Q9P2R6|RERE_HUMAN Arginine-glutamic acid dipeptide repeats protein; TrEMBL-Plants: tr|K7LAM7|K7LAM7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0772200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:134485415..134490399) extracted from Lotus japonicus Gifu genome v1.2.
ACGTCAGCAAACCGGATACCGGCAGCCGGAAAAAAAAAACATGTAGCATGTTTAAAATGTTTAAAAGTAAGGAAGTAAAA GAGTTATTCATTCACTCTGCTGCTCTTTCATGCCCCGCGAATTCACCATCCTGTTGCGTTCACTCCAGTGCCATTGAACA CAGGTTCTTTTTCTTCATCTTCTCCATTTACGTTCACTCCTTTCCTTTGATGCTCATCCTACTCTGATAACACACTCATA TATCAAAATATTTCCACCCATTTGTTTTTCTTTTTCCTCTCTTACTGTGTTTGCTTGCTTGATGCTTCCCCTTTCTAAGC TTTAGCATTTGATGTTTCTACCGCTTGCTTAGATGGTATCAAACACTCACTTTTCTCTGTAATCAACCTTTTCACTTTTC AACGTGTTGATGCCGTTGATTATGTTTGTGTGTGTGATGATAACACAGGGTACGGTCGGAGGAAGATGCTTGGAATGTTT CTGGGTTTTTGGTCTTTTGATTAATTGGTTGCTGTGTGTGTTTGTAATGTGGGTGTGTGTGCTCAATCTTGCGTGAATGA GTGTGCTTTGTTATCTTGTGGTTTTCATGATTTCTTCCTCTCTTCCTCTTGTGGGTTGCATGTTGGTGTTGGTTTGATTA TGATATGAACTTACATACAAATGGATCTGGGGTTTGTTATCTTCTTGTTGCTCGGTATTCAAAAGTCTTTGGGTTTATAT AATTTTCCACACGGGTTTTTTTTCATTTTCTTCTGGTGTGGTGTAGTTATTTTGAAGCTGTTTCTGCCATTGAAATAATC TTGTCCTTGAGAAAGAGTAGGCAAACTTAGCTTCTAGGGCAGGGAAAGTTATTAGCTTCTTATGCCAGTGATTTAGGTGT CCAATATCCATGTTGAGGACTTTGATGCTTTATGGAATGGGCAATATTCGTAGTTTCTACTGTGTTCTAATTTTCTCTGG TGCATAGAAAAACTTGCTTTGTTTTTTGTAATCCTTTTGGAATTAGTGGCCAATGAATAATTCCTCACCCAAAAATTTAT CCTGTTGCTTGTATTGTACTCTTGAGTTAACGAATAGTTATTCTTTTAAGTGGTGCTATAGTTGAAAGTTAAAACGATTC GATATCTGATATTTTGTTAGATATATAATGTGCAAGGGTTTGAAAAGTAATGATACAATGTGTCAATTCCTTATGAGTAA CGCGTACCAATAGATGCAAAATCTGAGCATGGTAAATATGAATGATTAATGAGTAACTCTGAACATTATCTTTTTCCTTG TTGCAACTCATGTTTGAAGTTTGCTCCTTGACAATGTTATCTAATCTACATTTCCTTTATAACATTTTGTCTTGAGCTTT GGATTGAGTTTATAACAGTTAGCTTTCTTACTTATCCTATATTTTTTGCCAGAAGACGTCAATTGAGCAGATTGTTAACA GTACTATAATGAAGCGTGCATCTAATAGTCCTCCAAAATCTCCTGATATAAATAATATTGTTGGAGACCCAGAGAAAAAT CCTCGAGTAGGTGCTGAATACCAGGTGGAAGTTCCTTCCATGATAACAGAATTAGAGCGGCTTCAACTTCAAAGGAACCC TGCTGATTCAGAAGCTGTGCAAGATCGCTCACTTTCCTTTGCATTTGGTTTGCCCATCTCGGTTTCATGGATACATAATG AAGTGGAGGATAGTGAAGACGAAGGGCGGGGATACCATGAAGACACTGATGGTACAGCCGATGCAATTAAACCTGAAAAT GCAGCTAATGTGAAAAAGAATGGCGTATCAGACGATGGGGAAGAGCTGAAACCGATGACTGGAGACAACAAGCTTGATCA ACCGGGCAGAAGGAATATTTTTGTAATTGCCCCTTGCAGTTTTAGTAACTCTTGGAGTGATACTGATGTAAAAAGATTTC TCCTTGGATTGTTTATTTTTCGGAAGAACTTTAATCAGATAAAAAGATTCTTAGAGAACAAAGGGATGGGGGAGATACTG TCATTTTACTATGGAAAGTTTTACAAATCTGATGAATATCGAAGATGGTCACGGTGCAGGAAGGCAAAAGGCAGAAAATG TATGACAGGACAGAAACTTTTTACTGGATTGAGGCAACAAGAACTATTGTCTCGCTTGATTCCCCATGTCTCTGAAGAAT CTCGAGAAACTTTGCTAGAGGTACTCAATTCAACTGTGTCATCTCATCTCCAGTGTTGTCAATGAGCTATGATTTGTCAG ATTGGCTTAGCATGTCTCACTGCATTCTATGTTTTCAAAATTTTCTTTCATTCTGCCTATGTTAACGGTAATGTTGATTT TTTCATCAAGTATTTTTATTAACATGTTTGGATCAACTTCTCTTTCATCAAAATCAATTCTGAAACCTAGAAGCTAAACA CAGAAGGTTCTCCTCAGAAATGATTATGGCTCCAGAATCAATTGTAGAAGGGTTTCCAAACATGCACCTAGTATATCTTT CTTCAACTTCTTTTTTGAAGTGCCATGATTTTTTAATGACAACAATAATTTTGTTAAGTGATAATCTGGCTTATGTGGTG TTATATTTATAATGATTGACTGTCCATTTTTATGGGCTTACTAACCATGTAGAAGGATAGAAGCCACATCTGTATCTTCT AGAAATACCTTTTTTTTTGTTTTTTTTTTCTATCTGTTTTTGAGCTTCAAATGATGCTTAGATAATTGGATTGTTTCTTC TAGTCCATTTGATGTTGGAAAGTGAAAGCTTCACTAAATCAATATGAAGTATCTCACATGGTAATCATGGTGGAATATCT AATTGAATTATTATCCTGTTGTGATGTACCTATGATTATTTGGACCTTTATGGCAAGTGGACTTTCATCTTCTTCAATCA TGCCAGTTGGATCATTTACGTGCTTTGATCCTTACTTTGCTTATGTCTATAATCAGGTTTCCATGTCATATGTGGAGGGG AAAACTTCTCTAGAAGAATATGTATCTTATTTGAAGTCTCTTGTTGGACTCGATGTTCTCGTGGAAGCAATAGGCATTGG AAAGGAGAAGGAAGACCTTACAAGACTTCCTGCGGAATCTGTGAAGAAAAATAAGGTGCTTCCCACACCAATTTGCAAAG CTTGGTCTTCTCTTGAACCCAGTGAGATAATTAAAATTTTGACCGGAGGATCTCGACTGAGCAAAGCCAAAAGTAATGAT CTCTTCTGGGAAGCTGTTTGGCCGCGCCTACTGGCAAGAGGTTGGCACTCTGAGCAACCAAAGAATCAAGGCTATGTCGG CTCCAAGGGCTGTCTAGTTTTTCTTATCCCTGGTGTGAAGAAGTTTTCAAGGAGAAAACTTGTCAAAGGTGATCATTACT TTGACTCTGTTAGTGATGTCTTGAGCAAAGTGGGAGCTGAACCAAATCTTCTTGAGCTAGAAGAAGCTAAAGCTGGTAGC TGCATTGATGAAGAGCCAGAAAAGGGATCAAGCGAAGATGATCAATCTGATTTTCATCGTCAATGTTACCTCAAACCCCG AGGTTCTACAAGCGATGAAGACCATATGAAATTCACGGTTATCGATACTAGTTTGGCGCATGGAGGGAAGTCATCTGATA TAAGGGCATGGAAGTCTGTGCCTATTAATTCAGTAAGTAAAATTGATGTAGATGCGGCTGGTGACAGCATTGATAAGAAT TTGACTATGTCCACGGTTATTGATACTAGTTTGCTTTACGAGGGAAAATTATTGAAGAAGGTGAGAGTACTGAGAAATCC GCCAGTTGAATCGGACAATGCTTTTAAGATGACTGGTCTTTCAAGAAAAAGTAAGGGTAGCTCTCCTAGTGATGATTCAC CAAGTGTGTTCAAAGCTAGAATGTCGAATACTGATAGCCGGAAAGGTGTATCTTATGGTGATTCTAGCAACCGAAAAGAA GCATATGATAATCCAGATAATGGCGCAAACAGGATGGTAAAAAGCCAGCAAAATCAGAAGAACAGTGTTTCTGAGGACAA TCAACTGAAGAGGACCATAAAGCATCGATTCAGTAGGAGAGCAATATCTGGTCATTCCAATCAAGCAGCTCTTCCCACTA AAAGGAGGAGATTGACTGCTTGTGTCAAGGCAGAGGCCAGTCGTGTCGCTGATAATTCCTCAGGAGGCTTGGGATCAACA AAACCAGCATTCTCGCTGTCATCGAGCTTTCTAGATGCCAAAATTCTTGATCCAGTTAGTCATCAGGGGAATGGTAATTT AATTGCTTCTTCAGCTGACAAAAGTGTGGAAGATTATCATGAAGAAAGCATTCTCAATGACAATCCTAAATGCAAGTCCA CTTCTTGTGTTAAGAAGTGTGAATCGCAGATGCCGGTCACCTTCAACATACCTCATGATCCATATAAAAATAGTGAAATG GCAATGGACGAGGAAGATGGACAGTGCTTAAAAGAAAATGATCCGTTTTCTGATACTCAGGAGGTAGTTGAGGAACCACT GAGAACCTTTTGTGATGTTGATTCTGTGGAACAGCAGCCTAATGCAAATCCCAGAAGGCAGAGCACAAGAAACCGACCAT TGACAGTGAGAGCATTGGAATCAATAGCAAATGAATTCTTGCATGTGCAGAGGAGACGAAAAAGGAAAGACATCCAGACA CTCAAAGATCCTTCTTTTAGTCCTTGCCGCAGGGCTCGTTCAAGACGCGATTGTTCAGATCATGGAACTGCAGTTTCAGC AGAAGAAAAGCATTTGAATGGAGATTCTGGTGTGTTTGCAAAATGTTTGCAAGCCTCTACATCAAATTAAAGAATACCTG TCTATTTTACTAGTTAACTTTGTAGCTACCTGTCTATCTGTCATTATGAAGTTTTGGATGCAAATATGTTCTAAAGATGC TGAGGTTATAAGACATACTGTACAGACTTTTGGCTAGACTTGAGAGAATGTTGATGCAATCAGCTGTTTATACTTAAAGG GAATAGAAGACTGCTGCTTTTTTAA
CDS sequence (LotjaGi1g1v0772200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAGCGTGCATCTAATAGTCCTCCAAAATCTCCTGATATAAATAATATTGTTGGAGACCCAGAGAAAAATCCTCGAGT AGGTGCTGAATACCAGGTGGAAGTTCCTTCCATGATAACAGAATTAGAGCGGCTTCAACTTCAAAGGAACCCTGCTGATT CAGAAGCTGTGCAAGATCGCTCACTTTCCTTTGCATTTGGTTTGCCCATCTCGGTTTCATGGATACATAATGAAGTGGAG GATAGTGAAGACGAAGGGCGGGGATACCATGAAGACACTGATGGTACAGCCGATGCAATTAAACCTGAAAATGCAGCTAA TGTGAAAAAGAATGGCGTATCAGACGATGGGGAAGAGCTGAAACCGATGACTGGAGACAACAAGCTTGATCAACCGGGCA GAAGGAATATTTTTGTAATTGCCCCTTGCAGTTTTAGTAACTCTTGGAGTGATACTGATGTAAAAAGATTTCTCCTTGGA TTGTTTATTTTTCGGAAGAACTTTAATCAGATAAAAAGATTCTTAGAGAACAAAGGGATGGGGGAGATACTGTCATTTTA CTATGGAAAGTTTTACAAATCTGATGAATATCGAAGATGGTCACGGTGCAGGAAGGCAAAAGGCAGAAAATGTATGACAG GACAGAAACTTTTTACTGGATTGAGGCAACAAGAACTATTGTCTCGCTTGATTCCCCATGTCTCTGAAGAATCTCGAGAA ACTTTGCTAGAGGTTTCCATGTCATATGTGGAGGGGAAAACTTCTCTAGAAGAATATGTATCTTATTTGAAGTCTCTTGT TGGACTCGATGTTCTCGTGGAAGCAATAGGCATTGGAAAGGAGAAGGAAGACCTTACAAGACTTCCTGCGGAATCTGTGA AGAAAAATAAGGTGCTTCCCACACCAATTTGCAAAGCTTGGTCTTCTCTTGAACCCAGTGAGATAATTAAAATTTTGACC GGAGGATCTCGACTGAGCAAAGCCAAAAGTAATGATCTCTTCTGGGAAGCTGTTTGGCCGCGCCTACTGGCAAGAGGTTG GCACTCTGAGCAACCAAAGAATCAAGGCTATGTCGGCTCCAAGGGCTGTCTAGTTTTTCTTATCCCTGGTGTGAAGAAGT TTTCAAGGAGAAAACTTGTCAAAGGTGATCATTACTTTGACTCTGTTAGTGATGTCTTGAGCAAAGTGGGAGCTGAACCA AATCTTCTTGAGCTAGAAGAAGCTAAAGCTGGTAGCTGCATTGATGAAGAGCCAGAAAAGGGATCAAGCGAAGATGATCA ATCTGATTTTCATCGTCAATGTTACCTCAAACCCCGAGGTTCTACAAGCGATGAAGACCATATGAAATTCACGGTTATCG ATACTAGTTTGGCGCATGGAGGGAAGTCATCTGATATAAGGGCATGGAAGTCTGTGCCTATTAATTCAGTAAGTAAAATT GATGTAGATGCGGCTGGTGACAGCATTGATAAGAATTTGACTATGTCCACGGTTATTGATACTAGTTTGCTTTACGAGGG AAAATTATTGAAGAAGGTGAGAGTACTGAGAAATCCGCCAGTTGAATCGGACAATGCTTTTAAGATGACTGGTCTTTCAA GAAAAAGTAAGGGTAGCTCTCCTAGTGATGATTCACCAAGTGTGTTCAAAGCTAGAATGTCGAATACTGATAGCCGGAAA GGTGTATCTTATGGTGATTCTAGCAACCGAAAAGAAGCATATGATAATCCAGATAATGGCGCAAACAGGATGGTAAAAAG CCAGCAAAATCAGAAGAACAGTGTTTCTGAGGACAATCAACTGAAGAGGACCATAAAGCATCGATTCAGTAGGAGAGCAA TATCTGGTCATTCCAATCAAGCAGCTCTTCCCACTAAAAGGAGGAGATTGACTGCTTGTGTCAAGGCAGAGGCCAGTCGT GTCGCTGATAATTCCTCAGGAGGCTTGGGATCAACAAAACCAGCATTCTCGCTGTCATCGAGCTTTCTAGATGCCAAAAT TCTTGATCCAGTTAGTCATCAGGGGAATGGTAATTTAATTGCTTCTTCAGCTGACAAAAGTGTGGAAGATTATCATGAAG AAAGCATTCTCAATGACAATCCTAAATGCAAGTCCACTTCTTGTGTTAAGAAGTGTGAATCGCAGATGCCGGTCACCTTC AACATACCTCATGATCCATATAAAAATAGTGAAATGGCAATGGACGAGGAAGATGGACAGTGCTTAAAAGAAAATGATCC GTTTTCTGATACTCAGGAGGTAGTTGAGGAACCACTGAGAACCTTTTGTGATGTTGATTCTGTGGAACAGCAGCCTAATG CAAATCCCAGAAGGCAGAGCACAAGAAACCGACCATTGACAGTGAGAGCATTGGAATCAATAGCAAATGAATTCTTGCAT GTGCAGAGGAGACGAAAAAGGAAAGACATCCAGACACTCAAAGATCCTTCTTTTAGTCCTTGCCGCAGGGCTCGTTCAAG ACGCGATTGTTCAGATCATGGAACTGCAGTTTCAGCAGAAGAAAAGCATTTGAATGGAGATTCTGGTGTGTTTGCAAAAT GTTTGCAAGCCTCTACATCAAATTAA
Protein sequence (LotjaGi1g1v0772200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKRASNSPPKSPDINNIVGDPEKNPRVGAEYQVEVPSMITELERLQLQRNPADSEAVQDRSLSFAFGLPISVSWIHNEVE DSEDEGRGYHEDTDGTADAIKPENAANVKKNGVSDDGEELKPMTGDNKLDQPGRRNIFVIAPCSFSNSWSDTDVKRFLLG LFIFRKNFNQIKRFLENKGMGEILSFYYGKFYKSDEYRRWSRCRKAKGRKCMTGQKLFTGLRQQELLSRLIPHVSEESRE TLLEVSMSYVEGKTSLEEYVSYLKSLVGLDVLVEAIGIGKEKEDLTRLPAESVKKNKVLPTPICKAWSSLEPSEIIKILT GGSRLSKAKSNDLFWEAVWPRLLARGWHSEQPKNQGYVGSKGCLVFLIPGVKKFSRRKLVKGDHYFDSVSDVLSKVGAEP NLLELEEAKAGSCIDEEPEKGSSEDDQSDFHRQCYLKPRGSTSDEDHMKFTVIDTSLAHGGKSSDIRAWKSVPINSVSKI DVDAAGDSIDKNLTMSTVIDTSLLYEGKLLKKVRVLRNPPVESDNAFKMTGLSRKSKGSSPSDDSPSVFKARMSNTDSRK GVSYGDSSNRKEAYDNPDNGANRMVKSQQNQKNSVSEDNQLKRTIKHRFSRRAISGHSNQAALPTKRRRLTACVKAEASR VADNSSGGLGSTKPAFSLSSSFLDAKILDPVSHQGNGNLIASSADKSVEDYHEESILNDNPKCKSTSCVKKCESQMPVTF NIPHDPYKNSEMAMDEEDGQCLKENDPFSDTQEVVEEPLRTFCDVDSVEQQPNANPRRQSTRNRPLTVRALESIANEFLH VQRRRKRKDIQTLKDPSFSPCRRARSRRDCSDHGTAVSAEEKHLNGDSGVFAKCLQASTSN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 26 | 26 | - | – | |
| PANTHER | 3 | 840 | 838 | 0.0 | – | |
| PANTHER | 3 | 840 | 838 | 0.0 | – | |
| MobiDBLite | 81 | 98 | 18 | - | – | |
| MobiDBLite | 81 | 129 | 49 | - | – | |
| Gene3D | 143 | 208 | 66 | 1.1E-8 | – | |
| ProSiteProfiles | 144 | 196 | 53 | 9.432 | ||
| SUPERFAMILY | 147 | 195 | 49 | 8.07E-7 | ||
| MobiDBLite | 522 | 600 | 79 | - | – | |
| MobiDBLite | 529 | 563 | 35 | - | – | |
| MobiDBLite | 581 | 598 | 18 | - | – | |
| MobiDBLite | 766 | 785 | 20 | - | – | |
| MobiDBLite | 805 | 833 | 29 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). |
Expression pattern of LotjaGi1g1v0772200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…