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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0772300 |
| Transcript ID | LotjaGi1g1v0772300.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Arginine-glutamic acid dipeptide repeats; TAIR: AT1G09050.1 arginine-glutamic acid dipeptide repeat protein; Swiss-Prot: sp|Q9P2R6|RERE_HUMAN Arginine-glutamic acid dipeptide repeats protein; TrEMBL-Plants: tr|K7LAM7|K7LAM7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0772300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:134499755..134504702) extracted from Lotus japonicus Gifu genome v1.2.
TTCATTCTGCTACTCTTTCATGCCCCGCGAATTCACCATCCTGTTGCGTTCACTCCAGTGCCATTGAACACAGGTTCTTT TTCTTCATCTTCTCCATTTACGTTCACTCCTTTCCTTTGATGCTCATCCTACTCTGATAACACACTCATATATCAAAATA TTTCCACCCATTTGTTTTTCTTTTTCCTCTCTTACTGTGTTTGCTTGCTTGATGCTTCCCCTTTCTAAGCTTTAGCATTT GATGTTTCTACCGCTTGCTTAGATGGTATCAAACACTCACTTTTCTCTGTAATCAACCTTTTCACTTTTCAACGTGTTGA TGCCGTTGATTATGTTTGTGTGTGTGATGATAACACAGGGTACGGTCGGAGGAAGATGCTTTGGAATGTTTCTGGGTTTT TGATTAATTGGTTGTTGTGTGTGTTTGTAATGTGGGTGTGTGTGCTCAATCTTGTGTGAATGAGTGTGCTTTGTTATCTT GTGGTTTTCATGATTTCTTCCTCTCTTCCTCTTGTGGGTTGCATGTTGGTGTTGGTTTGATTATGATATGAACTTACATA CAAATGGATCTGGGGTTTGTTATCTTCTTGTTGCTTGGTATTCAAAAGTCTTTGGCTTTATATCATTTTCGACACGTTTT TTTTTCTTTTTTTTTCTTCTGCCTTTTGGTCTGGTGTGGTGTAGTTATTTTGAAGCTGTTTCCGCCATTGCAATAATCCT GTCCTTGAGAAAGAGTAGACAAATTTAGCTTCTGGGGCAGGGAAAGTTAATAGCTTCATATGCGGTATGCCAGTGGTTTA TCCATGTTGGGGACTTTGATGCTTTATGGAATTGACAATTTTTTGTATTTTCTGCTGTGTTCTAATTTTCTCTGGTACAT AGAAAAACTTGCTTTGTTTGTTGTAATCCTTTTGGAATTTAATGGCCAATGAATAATTACTCACCCAAAAATTTCTGCTG TTACTTGTATTGTACTCTTGAGTTAATGAATTGTTATTCTTTTAAGAAGTGGTGAAATAGTTCAATGTGAAAACAATTTG ATATCTGATACTTCGTTAGATAGCTAATATGCAAGGGTTTGTCAATTCCTTTTGAGTGGTTGCATACCAATAGTTGTAAA ATCTGAGAATGGTAAATATGAATGGTTAATGAGTAACTCTGAACATTATCTTTGTTCCTTGTTGCAACTCATGTTTGAAG TTTGCTCCTTGACAATGTTATCTAATCTACATTTCCTTTATAACATTTCTTGTTGAGCTTTGAATTGAGTTTATAACTGT TAGCTTTCTTACTTATCCTATATTTTTTGCCAGATGACGTCAATTGAGAAGAGTGTTAACAGTACTATAATGAAGCGTGC ATCTAATAGTCCTCCAAAATCTCCTGATATAAATAATATTGTTGGAGACCCAGAGAAAAATCCTCGAGTAGGTGCTGAAT ACCAGGTGGAAGTTCCTTCCATGATAACAGAATTAGAGCAGCTTCGGCTTCAAAGGAACCCTGCTGATTCAGAAGCTGTG CAAGATCGCTCACTTTCCTTTGCATTTGGTTTGCCCATCTCGGTTTCGTGGATACATAATGAAGTGGAGGATAGTGAAGA CGAAGGACAGGGATACCATGAAGACACTGATGGTACAGCCGATGCAATTAAACCTGAAAAAGCAGCTAATGTGAAAAAGA ACGGCGTATCAGACGATGGGGCAGAGCTGAAACTGATGGCTGGAGACAACAAGCTTGATCAACCAGGCAGAAAGAATTTT TTTGTAATTTCCCCTTGCAGTTTGAGTAACTCTTGGAGTGATACTGATGTAAAAAGATTTCTCCTTGGTTTGTTTATTTT TCGGAAGAACTTTAATCAGATAAAAAGATTCTTAGAGAACAAAGGGATGGGGGAGATACTGTCATTTTACTATGGAAAGT TTTACAAATCTGATGAGTATCGAAGATGGTCAGGGTGCAGGAAGGCAAAAGGTAGAAAATGTATGACAGGACATAAACTT TTTACTGGATTGAGGCAACAAAAACTATTGTCTCGCTTGATTCCCCATGTCTCTGAAGAATCTCGAGAGACTTTGCTAGA GGTACTCAATTCAACTGTGTCATCTCATCTCCAGTGTTGTCAATGAGCTATGATTTGTCAGATGCTTAGCATGTCTCACT GCAGTCTATGTTTTCAAAATTTTCTTTCATTCTGCCTTTGTTAACTGTAATGTTGATTTTTTCATCAAGTATTTCTATTA ACATGTTTGGATCAACTTCTCTTTCATCAAAATCAATTTTGAAACCTAGAAGCTAAACACAGAAGGTTCTCCTCAGAAAT GATTATGGCTCCAGAATCAATTGTAGAAGATTTTCCAAACATGCACTTAGTATATCTTTCTTCAACTTATTTTTTGAATT GCCATGATTTTTTAATGACAACAATAATTTTGTTAAGTAATAATCTGGCTTATGTGGTGTTATATTTATAATGATTGACT GTCCATTTTATGGGGGCTTACTAACCATGTAGAAGGATAGAAGCCACATCTGTATCTTCTAGAAATACCTTTTTTTTTGT TTTTTTTCTCTTTTTGAGCTTCAAATGATGCTTAGATAATTGGATTGTTTCTTCTAGTCCATTTGATGTTGGAAAGTGAA AGCTTCACTATATCAATATGAAGTATCTCACATGGTAATCACGGTGGAATATCTAATTGAATTATTATCCTGTTGTGATG TACCTATGATTATTTGGACCTTTATGGCAAGTGGACTTTCATCTTCTTCAATCATGCCAGTTGCATCATTTATGTGCTTT GATCCTTACTTTGCTTATGTCTATAATCAGGTTTCCATGTTATATGTGGAGGGGAAAACTTCTCTAGAAGAATATGTATC TTATTTGAAGTCTCTTGTTGGACTTGATGTTCTTGTGGAAGCAATAGGCATTGGGAAGGAGAAGGAAGACCTTACAAGAC TTCCTGCGGAACCTGTGAAGAAAACTAAGGTGCTTCCCACACCAACTTGCAAAGCTTGGTCTTCTCTTGAACCCAGTGAG ATAATGAAAATTTTGACCGGAGGATCTCGACTGAGCAAAGCCAAAAGTAATGATCTCTTCTGGGAAGCTGTTTGGCCGCG CCTACTGGCAAGAGGTTGGCACTCTGAGCAACCGAAGAATCAAGGCTATCTCGGCTCCAAGGGCTGTCTAGTTTTTCTTA TCCCTGGTGTGAAGAAGTTTTCAAGGAGAAAACTTGTCAAAGGTGATCATTACTTTGACTCTGTTAGTGATGTCTTGAGC AAAGTGGGAGCTGAACCAAATCTTCTTGAGCTAGAAGAAGCTAAAGCTGGTAGCTGCATTGATGAAGAGCCAGAAAAGGG ATCAAGCGAAGATGATCAATCTGATTTTCATCGTCAATGTTACCTCAAACCCCAAGGTTCTACAAGCGATGAAGACCATA TGAAATTCATGGTTATCGATACCAGTTTGGCGCATGGAGGGAAGTCATCTGATATAAGGGCATGGAAGTCTGTGCCTATT AATTCAGTAAGTAAAATTGATGTAGATGCGGCTGGTGACAGCATTGATAAGAATTTGACTATGTTCACGGTTATTGATAC CAGTTTGCTTTATGAGGGAAAATTATTGAAGAAGGTGAGAGTACTGAGAAATCCGCCAGTTGAATCGGACAATGCTTCTA AGATGACTGGTCTTTCAAGAAAAAGTAAGGGTAGCTCTCCTAATGATGATTCACCAAGTGTGTTCAAAGCTAGTATGTCG AATACTGATATCCGGAAAGGTGTATCTTATGGTGATTCTACCAACCGAAAAGAAGCATATGATAATCCAGATAATGGCGC AAACAGGATGGTAAAAAGCCAGCAAAATCAGAAGAACAGTGTTTCTGAGGACAATCAACTGAAGAGGACCATAAAGCATC AATTCAGTAGGAGAGCAATATCTGGTCATTCCAATCATGCAGCTCTTCCCACTAAAAGGAGGAGATTGACTGCTTGTGTC AAGGCAGAGGCCAGCCGTGTCGCTGATAATTCCTCAGGAGGCTTGGGATCAACCAAACAGGCATTCTCGCTGTCGACGAG CTTTGTAGATGCCAAAATTCGTGATCCAGTTAGCCATAAGGAGAATGGAAATTTAATTGCTTCTTCAGCTGGCAAAAGTG TGAAAGATTATCATGAAGAAAGTATTCTCAATGACAATCCTAAATGCAAGTCCACTTCTTGTGTTAAGAAGTGTGAATCG CAGATGCCGGTCACCTTCAACATGCCTCATGATCCATCTACAAATAGTGAAATGGCAATGGACAAGGAAGATGGACAGTG CTTAAAAGAAAAGGATCCGTTTCAGACTTCTGATACTCAGGAGGTAGTTGAGAAACCACTGAGAACCTCTTGTGATGTTG ATTCTGTGGAACAGCAGCCTAATGCAAATCCCAGAAGGCAGAGCACAAGAAACCGACCATTGACAGTGCGAGCATTGGAA TCAATAGCAAATGAATTCTTGCATGTGCAGAGGAGACGGAAAAGGAAAGACATCCAGACGCTCAAAGATCCTTCTTTTAG TCCTTGCCGCAGGGCTCGTTCAAGACGCGATTGTTCAGATCATGGAACTGCAGTATCAGCAGAAGAAAAGAATTTGAATG GAGATTCTGGTGTGTTAGCAAAATGTTTGCAAGCCTCTACATCAAATTAAAGAATACCTGTCTATTTTACTTGTTAACTT TGAAGCTACCTGTCTATCTGTCATTATGAAGTTTTGGATGCAAATATGTTCTAAAGCTGCTGAGGTTATAAGACATACTG TACAGACTTTTGGCTAGACTTGAGAGAATGTTGATGCAATCAGCTGTTTATACTTAAAAGGAATAGAAAACTGCTTTTTT AGTTTGTGTTATTTTTCTAACAATGTTGAGCATGTCCACATTTGGCAAATTAGTTCTTGATCATTTTC
CDS sequence (LotjaGi1g1v0772300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGACGTCAATTGAGAAGAGTGTTAACAGTACTATAATGAAGCGTGCATCTAATAGTCCTCCAAAATCTCCTGATATAAA TAATATTGTTGGAGACCCAGAGAAAAATCCTCGAGTAGGTGCTGAATACCAGGTGGAAGTTCCTTCCATGATAACAGAAT TAGAGCAGCTTCGGCTTCAAAGGAACCCTGCTGATTCAGAAGCTGTGCAAGATCGCTCACTTTCCTTTGCATTTGGTTTG CCCATCTCGGTTTCGTGGATACATAATGAAGTGGAGGATAGTGAAGACGAAGGACAGGGATACCATGAAGACACTGATGG TACAGCCGATGCAATTAAACCTGAAAAAGCAGCTAATGTGAAAAAGAACGGCGTATCAGACGATGGGGCAGAGCTGAAAC TGATGGCTGGAGACAACAAGCTTGATCAACCAGGCAGAAAGAATTTTTTTGTAATTTCCCCTTGCAGTTTGAGTAACTCT TGGAGTGATACTGATGTAAAAAGATTTCTCCTTGGTTTGTTTATTTTTCGGAAGAACTTTAATCAGATAAAAAGATTCTT AGAGAACAAAGGGATGGGGGAGATACTGTCATTTTACTATGGAAAGTTTTACAAATCTGATGAGTATCGAAGATGGTCAG GGTGCAGGAAGGCAAAAGGTAGAAAATGTATGACAGGACATAAACTTTTTACTGGATTGAGGCAACAAAAACTATTGTCT CGCTTGATTCCCCATGTCTCTGAAGAATCTCGAGAGACTTTGCTAGAGGTTTCCATGTTATATGTGGAGGGGAAAACTTC TCTAGAAGAATATGTATCTTATTTGAAGTCTCTTGTTGGACTTGATGTTCTTGTGGAAGCAATAGGCATTGGGAAGGAGA AGGAAGACCTTACAAGACTTCCTGCGGAACCTGTGAAGAAAACTAAGGTGCTTCCCACACCAACTTGCAAAGCTTGGTCT TCTCTTGAACCCAGTGAGATAATGAAAATTTTGACCGGAGGATCTCGACTGAGCAAAGCCAAAAGTAATGATCTCTTCTG GGAAGCTGTTTGGCCGCGCCTACTGGCAAGAGGTTGGCACTCTGAGCAACCGAAGAATCAAGGCTATCTCGGCTCCAAGG GCTGTCTAGTTTTTCTTATCCCTGGTGTGAAGAAGTTTTCAAGGAGAAAACTTGTCAAAGGTGATCATTACTTTGACTCT GTTAGTGATGTCTTGAGCAAAGTGGGAGCTGAACCAAATCTTCTTGAGCTAGAAGAAGCTAAAGCTGGTAGCTGCATTGA TGAAGAGCCAGAAAAGGGATCAAGCGAAGATGATCAATCTGATTTTCATCGTCAATGTTACCTCAAACCCCAAGGTTCTA CAAGCGATGAAGACCATATGAAATTCATGGTTATCGATACCAGTTTGGCGCATGGAGGGAAGTCATCTGATATAAGGGCA TGGAAGTCTGTGCCTATTAATTCAGTAAGTAAAATTGATGTAGATGCGGCTGGTGACAGCATTGATAAGAATTTGACTAT GTTCACGGTTATTGATACCAGTTTGCTTTATGAGGGAAAATTATTGAAGAAGGTGAGAGTACTGAGAAATCCGCCAGTTG AATCGGACAATGCTTCTAAGATGACTGGTCTTTCAAGAAAAAGTAAGGGTAGCTCTCCTAATGATGATTCACCAAGTGTG TTCAAAGCTAGTATGTCGAATACTGATATCCGGAAAGGTGTATCTTATGGTGATTCTACCAACCGAAAAGAAGCATATGA TAATCCAGATAATGGCGCAAACAGGATGGTAAAAAGCCAGCAAAATCAGAAGAACAGTGTTTCTGAGGACAATCAACTGA AGAGGACCATAAAGCATCAATTCAGTAGGAGAGCAATATCTGGTCATTCCAATCATGCAGCTCTTCCCACTAAAAGGAGG AGATTGACTGCTTGTGTCAAGGCAGAGGCCAGCCGTGTCGCTGATAATTCCTCAGGAGGCTTGGGATCAACCAAACAGGC ATTCTCGCTGTCGACGAGCTTTGTAGATGCCAAAATTCGTGATCCAGTTAGCCATAAGGAGAATGGAAATTTAATTGCTT CTTCAGCTGGCAAAAGTGTGAAAGATTATCATGAAGAAAGTATTCTCAATGACAATCCTAAATGCAAGTCCACTTCTTGT GTTAAGAAGTGTGAATCGCAGATGCCGGTCACCTTCAACATGCCTCATGATCCATCTACAAATAGTGAAATGGCAATGGA CAAGGAAGATGGACAGTGCTTAAAAGAAAAGGATCCGTTTCAGACTTCTGATACTCAGGAGGTAGTTGAGAAACCACTGA GAACCTCTTGTGATGTTGATTCTGTGGAACAGCAGCCTAATGCAAATCCCAGAAGGCAGAGCACAAGAAACCGACCATTG ACAGTGCGAGCATTGGAATCAATAGCAAATGAATTCTTGCATGTGCAGAGGAGACGGAAAAGGAAAGACATCCAGACGCT CAAAGATCCTTCTTTTAGTCCTTGCCGCAGGGCTCGTTCAAGACGCGATTGTTCAGATCATGGAACTGCAGTATCAGCAG AAGAAAAGAATTTGAATGGAGATTCTGGTGTGTTAGCAAAATGTTTGCAAGCCTCTACATCAAATTAA
Protein sequence (LotjaGi1g1v0772300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MTSIEKSVNSTIMKRASNSPPKSPDINNIVGDPEKNPRVGAEYQVEVPSMITELEQLRLQRNPADSEAVQDRSLSFAFGL PISVSWIHNEVEDSEDEGQGYHEDTDGTADAIKPEKAANVKKNGVSDDGAELKLMAGDNKLDQPGRKNFFVISPCSLSNS WSDTDVKRFLLGLFIFRKNFNQIKRFLENKGMGEILSFYYGKFYKSDEYRRWSGCRKAKGRKCMTGHKLFTGLRQQKLLS RLIPHVSEESRETLLEVSMLYVEGKTSLEEYVSYLKSLVGLDVLVEAIGIGKEKEDLTRLPAEPVKKTKVLPTPTCKAWS SLEPSEIMKILTGGSRLSKAKSNDLFWEAVWPRLLARGWHSEQPKNQGYLGSKGCLVFLIPGVKKFSRRKLVKGDHYFDS VSDVLSKVGAEPNLLELEEAKAGSCIDEEPEKGSSEDDQSDFHRQCYLKPQGSTSDEDHMKFMVIDTSLAHGGKSSDIRA WKSVPINSVSKIDVDAAGDSIDKNLTMFTVIDTSLLYEGKLLKKVRVLRNPPVESDNASKMTGLSRKSKGSSPNDDSPSV FKASMSNTDIRKGVSYGDSTNRKEAYDNPDNGANRMVKSQQNQKNSVSEDNQLKRTIKHQFSRRAISGHSNHAALPTKRR RLTACVKAEASRVADNSSGGLGSTKQAFSLSTSFVDAKIRDPVSHKENGNLIASSAGKSVKDYHEESILNDNPKCKSTSC VKKCESQMPVTFNMPHDPSTNSEMAMDKEDGQCLKEKDPFQTSDTQEVVEKPLRTSCDVDSVEQQPNANPRRQSTRNRPL TVRALESIANEFLHVQRRRKRKDIQTLKDPSFSPCRRARSRRDCSDHGTAVSAEEKNLNGDSGVLAKCLQASTSN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 854 | 854 | 0.0 | – | |
| MobiDBLite | 1 | 38 | 38 | - | – | |
| PANTHER | 1 | 854 | 854 | 0.0 | – | |
| MobiDBLite | 1 | 25 | 25 | - | – | |
| Gene3D | 154 | 220 | 67 | 3.2E-8 | – | |
| ProSiteProfiles | 156 | 208 | 53 | 9.247 | ||
| SUPERFAMILY | 159 | 207 | 49 | 8.22E-7 | ||
| MobiDBLite | 533 | 611 | 79 | - | – | |
| MobiDBLite | 535 | 575 | 41 | - | – | |
| MobiDBLite | 593 | 610 | 18 | - | – | |
| MobiDBLite | 731 | 799 | 69 | - | – | |
| MobiDBLite | 742 | 764 | 23 | - | – | |
| MobiDBLite | 778 | 799 | 22 | - | – | |
| MobiDBLite | 819 | 850 | 32 | - | – | |
| MobiDBLite | 834 | 850 | 17 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). |
Expression pattern of LotjaGi1g1v0772300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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