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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0774200 |
| Transcript ID | LotjaGi1g1v0774200.1 |
| Related isoforms 7 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Protein YIPF; TAIR: AT5G27490.1 Integral membrane Yip1 family protein; Swiss-Prot: sp|Q54TS4|YIPF1_DICDI Protein YIPF1 homolog; TrEMBL-Plants: tr|I3T6N8|I3T6N8_LOTJA Protein YIPF; Found in the gene: LotjaGi1g1v0774200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:134660406..134668827) extracted from Lotus japonicus Gifu genome v1.2.
TAGATCCAACTCGTGTAATGTGAAGAACAGTGAATAGTTGCTTCTTTCCGCGCGAGAAAGAGAGAGAAAATAGAGAGAGA GAGAGAGAGAGAGAGAGAGAGAGAGATCTGGTTGTAAGAGAAAGAAAAAGGGACGAAGAAGAAGAAGAAGCAGAAGCAGA AGGAACGAGAGAAAGATGATGTCTGGTAAATACACTTCGATCGATAACCAACAGCTTCAAGGATCTGTACCTGTGAGTAT TCAATTCCATTCTTCGATTCGATTCGATTCCATTATCTTCAATTTTCGTTTCACATCTCTCTCACTCTCGTTTTCTCGCA GGCCGTTCCAGATCCACCTCCGGTCACCGTCAAGTTCACAGGTCAGTTTGCATTCTCAATTCGTTATGCTAATCGATTTA ATTGAATAGATCAGCTTCAAATTTCACCTCGAAACTTCCCCGATTCTCAATTTCTGTGCATTTTTGTTGCTAATTAAGTT CGCATCACTTGATTTTGCACCGTGTGGCTTCATTTGAACCTGTTTGTTGTTGCTAGCCTGGATCATTCTTCGATCTTCGG TTTTGTGCTGATTTTTGTAATATACTTCATCTGATTATGGCTTGTTTTGGTTTGTAGATTCAAATCTTAAGACATTTCCT CCATCTGAAACACAGGGCAAGATTACCGGTGGCTCCAGGCCTCCTCGTGATGCTGATGGTTTGTGCCATTCCACATTGTT CTCACTTTTTTCTTTTCCGTTTTAGTTTTGATAATGTTTGCTTTCAAGGTCGTTGTTGTTCCGTGCATTTGTATAAGCAC AGGCTGTTATTATGTTAATGACAACGAATGTCTGGTGGATTTTAATTTTTTGTTGAATATATTCCGAGATAGGTAGATTA GAAGCTTCAAGATGATTTTCATTTCTATTGCTATGTGCTTGTTAAAATCTGTTCTCTTTGGTTTTCCTGTTATGTTGCTT TACTCTATAGACGCATTTGGCCAGTCTTTTCGTCACGTCTCAATTATGAGGTTTGGTTTGAGTGTTTGGGTGGGAATGTG CTTTGACTGCTGTGGGCAGCCACCGTGCAATTAATCGTCTTAGTGGGTAATAGATGATAAGCCTGAAGAGTTTAGCTGAA CAATCAACAATATATTATATAACAATGTGGTAAAGGAGATACATCATAAAAAATTCAACTGATTTTAGAATTTTGTTGTA CTGACATTCCCTGAATCTAGGTTTGAATTTCATGGACTGATTTATCCTTAATAATGATGATCACCAAAATTAGTTGACTT GTCTATCCTTGCTTAAAATCTTGCTGTACTGGCAAGGTAACTGCTACTGCTGACTTTGAGCCAAGACCAGTCCTAAAACT GGCTGTTATTTTTTCTCACGTTTTGTTTGATCCAATCTTCTATGCTCATATTTTATTACTCTTGTGTATGGTTGATGCTT ACTACTTGTGACGACATTACCTTCTGTGCCTGTGACAATTTTGTGTTTGAGTTATTATGATTTGCAATTAATTTTCTTGG GATTTGTCTGACTTGTTTTTGTCAAATTGTTTCATTCATATTACGCAGATTCATTTTCAAAACCTGTATCTGGTTCTGAT GAACCCCAACAGCAGGGTGGTTGGCTTCATACTTTTACGGTTGCTGCTTACAAACCTTACTTTGACATCGACAGTTCAGA TGTTCTTGAGAGGATTAAAGACTCACTATTTCCATTTAGAGGAACTTTTAATGAAAAAACTGCAACCAACCCTGACTTGT AAGTTTACTTTCTCAAACAAACTACAAATGATCTGTATATAGTTAATATGTTTTTTTTATGAAGACAAGATGAAGCTAGA TTGTGGTGTCCTCAGTTCTGACATTTTCCAATTATGACATGTATCATAGTTAATATAATTATAATATGAAGCAAAGATGC TACTAAATTTCTGTATCTGTTTGTTATGCTAAATTGCTAATATCTATGAGCCAAAGTAAGGTATAAGACAGTAATGAAGA ACTATATTACATTCAAAATTTTGGGTTTGTGTGTGTTGTTGGGGGGGGGGGGGAGTTCTATGCTACATATTCTCATTGTG AACACTGACTTTTGAAGTATATCTCTGAAACAAGTAGATTAAACAGCATGTTTATGCCACAAGTTAACTATTGTTCTTTC CCCATATAACTAATAAACATGTTAGTTGTTATGTTTACCAACTGAATCTGAATAAGATGACTTTGTGTAAGTAGTAGGCC TATCTAGTTCATCACCATTATCTGGACAACTGAACTTAATATAGTCAGTAATACTCATTTGGGATGTAGGTAGACCACTC CTAAAAGGTTGACTATTAACAGAGAGAGACACTATGTCAGAATGTGAGTTAAGTTTTTCACACCCTGCGGATATGGGATT AACTCCTGCATCCATGTTGTCAAGCTGGAAAAAGTGGTCCATCCACATCAGAGGTGGACAAACTGGGCTCTAATTGGTGT AGGTCAAAGATCGAAATGAATAAGGAAGTTCCATGCCATCATTCTTGGAGATGACTTACAATCCCTTGGTTTATACACTG GAAACAACGATTTTTTTTAAATACTGTGGATAATTGGCAATAGTTTTCATAAAATTGCCAAATACAATCACCATGAAAAG TACAACTAAATCATCTAATGGCCACTACATTATTTTAGTTTTTGTCCTGCTTTGCTGCTCCGGCGTCAATTTGATTCCAT GTCTGGTGTTATTTTTTCTTTCTTTAGTGGCTTATATCCTCTATATAAATACTGCCATACTGGTGTTCCAAGATGAGGAT GTATGCCACTTCAAACTTTGGAGGACACATGTTTTACCGTTATGCCTTACTAAAAAGCGAACTTTATGTGGTTTAGCTGT GTGGCAGAATGTAATTTTGAGTTTACTGTAAATGTACGTAGGTATGGACCATTCTGGATTTGCACTACCTTAATATTTGT AGCAGCATCCATTGGCACATTCGTGACATATCTAGCTCACAAACTGAAGGACAAGGAATGGAACTATGACATAAACCTAG TGACTTGGTCTGCTGGTCTGTTTTATGGCTATGTTACCGTTGTTCCTCTTTGTCTGTATGTAATCCTCAAATACTTCTCT GCACCAGCAAGCCTTGTCCAACTATTCTGTCTATATGGATATTCCTTGTTTGTGTTTATTCCAGCAATGGTAAGCTTCTG CACTTCAATTTCTCCGTCTTATTTTAACTTCAACAATGAAATTTGACATTATCGCAGTACTGAATCCTCAAGTGAAACCC TTTGTTTGCAACAGTGTATGTCCGTTGTGCCACTGGAGATATTTAGATGGGTGATTGCAGGTGTGGCGGGACTCATGTCA GCAACATTTGTAGGGCTTAACCTCCGGGCACATATCATGTCAGCAGGTGAAAGGTGGTTCTTGATTGTTGCTGCCATTTT TCTGTTGCAGCTGGCTCTAGCCGTTGTATTAAAGATGTATCTCTTCACAGTATCAGTTTAAGAGGAAAGTGGACAGTGTG AATGAAATATATATGTAAGGAAGAAATAGCTTTTTGGCCCTTTAGGTTTCTATTAATACAATTTGTAGCTGAATTGTAAT TCACAGATATAAAACCATTGTGTATTCATTCATTTATGGCAATATAGAGGCGAATAACCGGTGGTTTTCATAACAAAAAC CATTTGTTAACATCACATGTGTATAATACGTGTGCCTGGCGATTTTGTCCAGAATGTTTTATTTTCTTTGACTAATTTGT CATGACTGTTAACCTCAGCTTCTATTTTTTTGGTGTAAAATTCAGAACTTAAGACCTCAAAGAAGTCTTAAGTGCTTAGT ATTACACACAATTTGGTAATTGTCCACTACCTAATTTTATTTTCAAGCGGTGCCAACTAATGTTAGAAACTAGACACAAT ACCAAACCTTTGAAAACCTAATAGGAACCGACCAACACACTGGTTTTACAATGATTAATTAATTGGAATGATGCTCATAG TTGTAGACAATTAGCTTTGTTTCGAGACATTTATAGTGTGAAGATATGAATATTCCATAATTGAACAAGTTGTCAAGAAG GCATAATAGCCCTTGAAAAAAGCATTGACTTTAAAGATCAAAAACAGACAAAGTAAAATAGTGTAAAGGAAGAGTCAAGC CCTGATACTGAAATTGTGGTGCTATGATAAACCAGGTTAGGCTGAGTTTGAAATTGCAGTGCTATAATAAACTAAGGTTA GGCTGATTTTGAAACTACTGTATATATTAAGAGTTCGTTAATTGACATGATTACACTATATAGGAAAAGTTTGGTATATA TACACTTCACCATCAATGCACAAACTCAAAAGCACTGATCTTAGACACATTCTTATAAGTGATATCATGTGTTGTCTGGT TTGATTATTTCTGGTATGAGCCACTCCCACACCTGTTCTTGATCTTTCCTTTCTTCATTTCTTAGTTCAGAGAAGCCAGA AGAGATTTCTAAATGATATTTGACAATTGTGGTGAAGTGATGACAGTTTCAAGGTCTCAAATGGGGTGTGTCTTCCTGAT ATTATTAAGCATTTTGGTTTTGAACCATGAAGTATTGGGTGCTAGGTTAGGAAAAGTGGAACATGTACACAAACTCATGC CTCCAGTATGGAGGAAAAGCTTTACCAGTGAAACTGATAGAAGCTATTACACAACAAGTAAAAGAGCAGTACCCTCCTCT CCTGACCGCTTGCACAACAGATAGGTAATTCTATCCTTCTAGCAATTGAATTCTCTGTCCTTTCAACAGAGATTACTTAG CATGTGATCAATAACGAGTTTTTTCCTGGGAAAAGCGAGTTTGAGTGCATACACCCATGCTATATGTTTATAATTATTAT TTCTTCAATCAAATCACTGCTAAATAACAGAATCCAGCAGTTTGAAGTTTCATTAGATGTTTGGTCAGCAGCTTTTTCAA GAATCAATTCTGAGCCGCAAAAGCTATGCTACTCACAGAAGAGTTAAAAGTCCAAAGCTACTCAGATAAGTTTCTTCTTG ATTCAATCATCAATCCTGAGACGCAGAAACTAATCTACTCATATGAAAGTCGAAATCCAGCAGCCTATCACAGGAACTTT TTTCTAAAAGCTACTCATTAAAGCTTCTTCATAGAAGAAGTTGATTCTATCTTTGGAATCATAAGAATTTTCAAACATGC ACTCACATCGATTAGGGTTTAGTGAGTAAAGATATATTGTTCAAGTTATATGGTTTAAAGGTGTAATATTTGAGTGGTAA CTTTTCACCTCACTTTTATTATACTCTCTTCCCATTTCTATTGCTTTTCCCTTTTATCACACTCACCTCAAGCTATGTAA ATGTGTAAATGCAGTACAATAGAAATGAATCACACTGATTATAGTACAAGGGTTAGATATATAAATAACACCAGACACAA TTTAGTTCCTAATTAAGTCCACACTACATTACATTTTCACAAAAGGGAGGAAGAAAGAAAGTGCTCAATATAAGTAGTTA ATCAGCAGAACCAACAAAGCCAAGAGCAAAAACTCAACCCCAGCATGCAAAGTAGATGCATCAGCAGCGAAAGTTCCAGT GGGTGTGTTGGTAGTGAGAACAAGCACCATCCAATCATCCTCTGAGCCAAGCCCTGCACCTGTGTACTTGGAATTGTTAA GATACTTAGCATACACATCAGAATGAGTGTAGTTGGAAAGCACAACAGTGGGTTCCAATTTGGCCACACAAACTGGGAGA ATGACCCCATCACTTGTGGTGGTGATGTTGATGTCACATTTATCAATGTGCTTCTGCAATTTTGGGATTTGCATGCTCCC ACCAGGGTAGTATTGACTCACTTGTTCACATGGTATGTCTTCCATTTCTTCTGCTATCTCATCTGCTAAACAATATGCCT TGGGAACACGGTTCAGGGGTGAAAGGTTCTTAGTCTGCCTGAAGCTATTGATTCCCTTGTATACACTATCCACCTCATCT ATCAATGAAGCACATGTGTAACATCATTAATAATAGTATATTAACTACTGAAACCAACACAAGAAGCAACTATATTATGT AATATGATTCAAGTAACTGAGACTAAGGAGAGTTTTGGAAGATAAAGTACCTTTGCACTGAGTTGGAGTAGAAAGAAAGA GGAAAGCAAAGACACATGCAAGAAGGAAGAAACCAAGTTTGAAGGATGCCATGGTGAGCTTAATGTGAGTCGTAATGGCA AACCACCACACGTTTTTAATGAATTAGACTTGATAACAAGGGATAAACAAAAATGGGTTCCTAGAGTAATGACAGGTATA AAGTTCATCTTCCACGTGGTTGACATGCATGCAAGTAACCAGATAACACAGCAAAGAAACATTTTGAATTAAATAAGAGA ACAAGGTTGCTAGTTTGAAGTGTTTTCTAGATTATAACAAGTTAGATTCTGTGACTGGAAAATTCTATCCTACACCAAAT GGCTGATGGCAGGAATGTCCTAAATAACACATGTCATCTCTCTAGTATAGAAATTAATACGCCTATCTGTCATCATGTGT AGTATAAGTGGATCAATCTCATAGGTATGCAAGCTTTGAATATACCCTTATCAGCATGGGAATGTACCTATATTATCTGT GACAAGTCATCCAAATACCCTAAAAACTAATGACTAGTATTTAATTGAGTACTTTCCTCATCCTTGAATACTATAGCAGA ATATATCCTCCTATCCTATGGAAGATAGCTTTTAGGAGAGTTATAATCCATTGTAAACAAACAAACAGTGAGTAAATTTC ATATTAGTGTACCAAATGATGACCGTGTCCAAAACCAACAAGGAAGCTGCACTCAAAACCAATCCTTGTTTTGATTCAAT GTGCCCTTTTCTACAGATGTGTCCTCTGCATGTGATGAATATGACACGTCAAACACCTCCTTCTGCCACTCATCACCGCG TGGCATGTTCAACTTCTTCACAAACAACATGTGTATCTGGATGCAATCATCATCATACACACACAACTATCAGCAATGTG CCCCACTACTATATCTTTACCCCACACAACATCTTAAAAAGCATCCTCCATATCTTGCATTCACTTCAACATCCACAGCA GAAACCACATTTTCAGCCTCAGGAGATTTCCAAAAAGCATTTTGGTGAGCATGGCTTCTGGTGGACAGAAATTCCCCCCT CAGAAGCAAGAGACACAACCTGGCAAAGAACATGCCTTGAATCCAACACCCCAATTCACCAGCCCAGAGTATAAACCATC AAATAAACTTCAAGTACATATATATAATAACACCCTTTCTCTATACATGACCAAATTTCTACATTAACTGCTTGCATTAT TTAAAATTATTTCTTTCCACTCCCTCAATTTCGTAAGTTCTATATTGTGGGTTAATTTTCAGGGGAAGATAGCATTAATC ACTGGTGGTGACTCTGGAATTGGAAGAGCAGTGTGCAATTTATTTGCATTAGAGGGTGCAACTGTGATTTTCACCTATGT GAAGGGACAAGAGGACAAGGATGCGAGGGACACTATTGAAATGATAAAAAGGGCTAAGACTGCAGATGCTAAAGATCCAC TGGCTATACCAGCTGACCTTGGTTTTGATGAGAACTGCAAGAGAGTGGTGGATGAGGCAGTGAATGCTTATGGCCGCATA GATATTCTGGTCAACAATGCAGCTGAGCAGTATGAGTGTGGTTCAGTGGAGGAGATTGATGAGCCAAGACTTGAGAGGGT GTTCAGAACTAACATCTTCTCATATTTCTTCCTGACCAGGTAAAATCAAAATGGATTCAACTAAAAGTTGAAACAACATA GATATTTATCATTCACTAGCGGGGTTAAAATAAACTAAATCAAGCATATACTAACCTTCAACTCAATCTATGAAAAGAGT TTACTTCATTTTGTCTTGTATGATTTTTAAGTTTAACTAACTTGTATATTTGTATAGGCATGCCCTGAAGCATATGAAGG AAGGAAGCAGCATTATCAACACAACATCAGTGAATGCATACAAGGGACACCCTACATTACTGGACTACACTGCCACCAAG GGTGCCATTGTGGCCTTTACCAGGGGCCTTTCCCTTCAGCTTGTGAGCAAGGGAATAAGAGTGAATGGGGTTGCACCTGG ACCCATATGGACTCCATTGATACCAGCCTCTTTCAAGGAGGAAGAAACTGCTCAATTTGGTGCTGATGTGCCAATGAAAA GAGCTGGCCAGCCTGTTGAGGTTGCCCCCTCCTATGTGTTTCTTGCCTGCAACCAGTGCTCCTCCTACATAACTGGCCAA GTCCTCCACCCCAACGGTGATGCATACAAATACAATGATACTTTATACATAATGTGCATGTTTGGAAACTCTTTCAAAAA CCACTTTAAAACTAAAATCACG
CDS sequence (LotjaGi1g1v0774200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATGTCTGGTAAATACACTTCGATCGATAACCAACAGCTTCAAGGATCTGTACCTGCCGTTCCAGATCCACCTCCGGT CACCGTCAAGTTCACAGATTCAAATCTTAAGACATTTCCTCCATCTGAAACACAGGGCAAGATTACCGGTGGCTCCAGGC CTCCTCGTGATGCTGATGATTCATTTTCAAAACCTGTATCTGGTTCTGATGAACCCCAACAGCAGGGTGGTTGGCTTCAT ACTTTTACGGTTGCTGCTTACAAACCTTACTTTGACATCGACAGTTCAGATGTTCTTGAGAGGATTAAAGACTCACTATT TCCATTTAGAGGAACTTTTAATGAAAAAACTGCAACCAACCCTGACTTGTATGGACCATTCTGGATTTGCACTACCTTAA TATTTGTAGCAGCATCCATTGGCACATTCGTGACATATCTAGCTCACAAACTGAAGGACAAGGAATGGAACTATGACATA AACCTAGTGACTTGGTCTGCTGGTCTGTTTTATGGCTATGTTACCGTTGTTCCTCTTTGTCTGTATGTAATCCTCAAATA CTTCTCTGCACCAGCAAGCCTTGTCCAACTATTCTGTCTATATGGATATTCCTTGTTTGTGTTTATTCCAGCAATGTGTA TGTCCGTTGTGCCACTGGAGATATTTAGATGGGTGATTGCAGGTGTGGCGGGACTCATGTCAGCAACATTTGTAGGGCTT AACCTCCGGGCACATATCATGTCAGCAGGTGAAAGGTGGTTCTTGATTGTTGCTGCCATTTTTCTGTTGCAGCTGGCTCT AGCCGTTGTATTAAAGATGTATCTCTTCACAGTATCAGTTTAA
Protein sequence (LotjaGi1g1v0774200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MMSGKYTSIDNQQLQGSVPAVPDPPPVTVKFTDSNLKTFPPSETQGKITGGSRPPRDADDSFSKPVSGSDEPQQQGGWLH TFTVAAYKPYFDIDSSDVLERIKDSLFPFRGTFNEKTATNPDLYGPFWICTTLIFVAASIGTFVTYLAHKLKDKEWNYDI NLVTWSAGLFYGYVTVVPLCLYVILKYFSAPASLVQLFCLYGYSLFVFIPAMCMSVVPLEIFRWVIAGVAGLMSATFVGL NLRAHIMSAGERWFLIVAAIFLLQLALAVVLKMYLFTVSV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 75 | 75 | - | – | |
| Phobius | 1 | 122 | 122 | - | – | |
| MobiDBLite | 1 | 18 | 18 | - | – | |
| PANTHER | 29 | 276 | 248 | 1.3E-94 | ||
| PANTHER | 29 | 276 | 248 | 1.3E-94 | – | |
| MobiDBLite | 31 | 49 | 19 | - | – | |
| Pfam | 91 | 263 | 173 | 1.8E-13 | ||
| Phobius | 123 | 148 | 26 | - | – | |
| TMHMM | 126 | 148 | 23 | - | – | |
| Phobius | 149 | 167 | 19 | - | – | |
| TMHMM | 163 | 185 | 23 | - | – | |
| Phobius | 168 | 185 | 18 | - | – | |
| Phobius | 186 | 196 | 11 | - | – | |
| Phobius | 197 | 218 | 22 | - | – | |
| TMHMM | 197 | 219 | 23 | - | – | |
| Phobius | 219 | 223 | 5 | - | – | |
| Phobius | 224 | 242 | 19 | - | – | |
| TMHMM | 224 | 246 | 23 | - | – | |
| Phobius | 243 | 253 | 11 | - | – | |
| TMHMM | 253 | 275 | 23 | - | – | |
| Phobius | 254 | 275 | 22 | - | – | |
| Phobius | 276 | 280 | 5 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Golgi apparatus | A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions. | ||
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. | ||
| Biological process | Vesicle-mediated transport | A cellular transport process in which transported substances are moved in membrane-bounded vesicles; transported substances are enclosed in the vesicle lumen or located in the vesicle membrane. The process begins with a step that directs a substance to the forming vesicle, and includes vesicle budding and coating. Vesicles are then targeted to, and fuse with, an acceptor membrane. |
Expression pattern of LotjaGi1g1v0774200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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