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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0774300 |
| Transcript ID | LotjaGi1g1v0774300.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Glycoprotein membrane GPI-anchored protein; TAIR: AT3G06035.1 Glycoprotein membrane precursor GPI-anchored; Swiss-Prot: sp|Q84MC0|UGPI4_ARATH Uncharacterized GPI-anchored protein At3g06035; TrEMBL-Plants: tr|A0A151TW19|A0A151TW19_CAJCA Putative GPI-anchored protein family; Found in the gene: LotjaGi1g1v0774300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:134664750..134669358) extracted from Lotus japonicus Gifu genome v1.2.
TTTCGTTAAAATTTATGGAAGTCCACCAGATTTGACTATTTCAAAAATTTTCACATGTATGACGATACAAAGTCACATAA CCACACTAAAATTGATTCTGAGTTCTGAATGAGTTTTCAAACATGTATTAGTATTATGACGATACAAAGTCACATATCCA CACTTCAGTTTTATTTAAAACATACTTTAGCAAAAGAACTGGTATATTTATTAGTTTCTTATTTCTCAAGGTTTTTACAT TCAAAAGCAAAACTACAGAAGAGCTGGGGTGCTACATATTCTCTCATATAGAGCGCTATGATAACTGCTTTTTTGCCATT CTTTACACAGTTTAGGTACACAAAGAACCACAAAACCGGTTACATATGATATCGATTTCAACTTCTGCATGAGTCATCCT CATCACCCATTCACCACGTTTCCACCTGAAAAATAACAAAATTGTTAGCAAAACCAGACAACAAACACTTGATTCTGGTA TAAAATAGCATTATTTGGAAACTCATTCAATTCATGATGGACAGAAGCCACCGTGATTTTAGTTTTAAAGTGGTTTTTGA AAGAGTTTCCAAACATGCACATTATGTATAAAGTATCATTGTATTTGTATGCATCACCGTTGGGGTGGAGGACTTGGCCA GTTATGTAGGAGGAGCACTGGTTGCAGGCAAGAAACACATAGGAGGGGGCAACCTCAACAGGCTGGCCAGCTCTTTTCAT TGGCACATCAGCACCAAATTGAGCAGTTTCTTCCTCCTTGAAAGAGGCTGGTATCAATGGAGTCCATATGGGTCCAGGTG CAACCCCATTCACTCTTATTCCCTTGCTCACAAGCTGAAGGGAAAGGCCCCTGGTAAAGGCCACAATGGCACCCTTGGTG GCAGTGTAGTCCAGTAATGTAGGGTGTCCCTTGTATGCATTCACTGATGTTGTGTTGATAATGCTGCTTCCTTCCTTCAT ATGCTTCAGGGCATGCCTATACAAATATACAAGTTAGTTAAACTTAAAAATCATACAAGACAAAATGAAGTAAACTCTTT TCATAGATTGAGTTGAAGGTTAGTATATGCTTGATTTAGTTTATTTTAACCCCGCTAGTGAATGATAAATATCTATGTTG TTTCAACTTTTAGTTGAATCCATTTTGATTTTACCTGGTCAGGAAGAAATATGAGAAGATGTTAGTTCTGAACACCCTCT CAAGTCTTGGCTCATCAATCTCCTCCACTGAACCACACTCATACTGCTCAGCTGCATTGTTGACCAGAATATCTATGCGG CCATAAGCATTCACTGCCTCATCCACCACTCTCTTGCAGTTCTCATCAAAACCAAGGTCAGCTGGTATAGCCAGTGGATC TTTAGCATCTGCAGTCTTAGCCCTTTTTATCATTTCAATAGTGTCCCTCGCATCCTTGTCCTCTTGTCCCTTCACATAGG TGAAAATCACAGTTGCACCCTCTAATGCAAATAAATTGCACACTGCTCTTCCAATTCCAGAGTCACCACCAGTGATTAAT GCTATCTTCCCCTGAAAATTAACCCACAATATAGAACTTACGAAATTGAGGGAGTGGAAAGAAATAATTTTAAATAATGC AAGCAGTTAATGTAGAAATTTGGTCATGTATAGAGAAAGGGTGTTATTATATATATGTACTTGAAGTTTATTTGATGGTT TATACTCTGGGCTGGTGAATTGGGGTGTTGGATTCAAGGCATGTTCTTTGCCAGGTTGTGTCTCTTGCTTCTGAGGGGGG AATTTCTGTCCACCAGAAGCCATGCTCACCAAAATGCTTTTTGGAAATCTCCTGAGGCTGAAAATGTGGTTTCTGCTGTG GATGTTGAAGTGAATGCAAGATATGGAGGATGCTTTTTAAGATGTTGTGTGGGGTAAAGATATAGTAGTGGGGCACATTG CTGATAGTTGTGTGTGTATGATGATGATTGCATCCAGATACACATGTTGTTTGTGAAGAAGTTGAACATGCCACGCGGTG ATGAGTGGCAGAAGGAGGTGTTTGACGTGTCATATTCATCACATGCAGAGGACACATCTGTAGAAAAGGGCACATTGAAT CAAAACAAGGATTGGTTTTGAGTGCAGCTTCCTTGTTGGTTTTGGACACGGTCATCATTTGGTACACTAATATGAAATTT ACTCACTGTTTGTTTGTTTACAATGGATTATAACTCTCCTAAAAGCTATCTTCCATAGGATAGGAGGATATATTCTGCTA TAGTATTCAAGGATGAGGAAAGTACTCAATTAAATACTAGTCATTAGTTTTTAGGGTATTTGGATGACTTGTCACAGATA ATATAGGTACATTCCCATGCTGATAAGGGTATATTCAAAGCTTGCATACCTATGAGATTGATCCACTTATACTACACATG ATGACAGATAGGCGTATTAATTTCTATACTAGAGAGATGACATGTGTTATTTAGGACATTCCTGCCATCAGCCATTTGGT GTAGGATAGAATTTTCCAGTCACAGAATCTAACTTGTTATAATCTAGAAAACACTTCAAACTAGCAACCTTGTTCTCTTA TTTAATTCAAAATGTTTCTTTGCTGTGTTATCTGGTTACTTGCATGCATGTCAACCACGTGGAAGATGAACTTTATACCT GTCATTACTCTAGGAACCCATTTTTGTTTATCCCTTGTTATCAAGTCTAATTCATTAAAAACGTGTGGTGGTTTGCCATT ACGACTCACATTAAGCTCACCATGGCATCCTTCAAACTTGGTTTCTTCCTTCTTGCATGTGTCTTTGCTTTCCTCTTTCT TTCTACTCCAACTCAGTGCAAAGGTACTTTATCTTCCAAAACTCTCCTTAGTCTCAGTTACTTGAATCATATTACATAAT ATAGTTGCTTCTTGTGTTGGTTTCAGTAGTTAATATACTATTATTAATGATGTTACACATGTGCTTCATTGATAGATGAG GTGGATAGTGTATACAAGGGAATCAATAGCTTCAGGCAGACTAAGAACCTTTCACCCCTGAACCGTGTTCCCAAGGCATA TTGTTTAGCAGATGAGATAGCAGAAGAAATGGAAGACATACCATGTGAACAAGTGAGTCAATACTACCCTGGTGGGAGCA TGCAAATCCCAAAATTGCAGAAGCACATTGATAAATGTGACATCAACATCACCACCACAAGTGATGGGGTCATTCTCCCA GTTTGTGTGGCCAAATTGGAACCCACTGTTGTGCTTTCCAACTACACTCATTCTGATGTGTATGCTAAGTATCTTAACAA TTCCAAGTACACAGGTGCAGGGCTTGGCTCAGAGGATGATTGGATGGTGCTTGTTCTCACTACCAACACACCCACTGGAA CTTTCGCTGCTGATGCATCTACTTTGCATGCTGGGGTTGAGTTTTTGCTCTTGGCTTTGTTGGTTCTGCTGATTAACTAC TTATATTGAGCACTTTCTTTCTTCCTCCCTTTTGTGAAAATGTAATGTAGTGTGGACTTAATTAGGAACTAAATTGTGTC TGGTGTTATTTATATATCTAACCCTTGTACTATAATCAGTGTGATTCATTTCTATTGTACTGCATTTACACATTTACATA GCTTGAGGTGAGTGTGATAAAAGGGAAAAGCAATAGAAATGGGAAGAGAGTATAATAAAAGTGAGGTGAAAAGTTACCAC TCAAATATTACACCTTTAAACCATATAACTTGAACAATATATCTTTACTCACTAAACCCTAATCGATGTGAGTGCATGTT TGAAAATTCTTATGATTCCAAAGATAGAATCAACTTCTTCTATGAAGAAGCTTTAATGAGTAGCTTTTAGAAAAAAGTTC CTGTGATAGGCTGCTGGATTTCGACTTTCATATGAGTAGATTAGTTTCTGCGTCTCAGGATTGATGATTGAATCAAGAAG AAACTTATCTGAGTAGCTTTGGACTTTTAACTCTTCTGTGAGTAGCATAGCTTTTGCGGCTCAGAATTGATTCTTGAAAA AGCTGCTGACCAAACATCTAATGAAACTTCAAACTGCTGGATTCTGTTATTTAGCAGTGATTTGATTGAAGAAATAATAA TTATAAACATATAGCATGGGTGTATGCACTCAAACTCGCTTTTCCCAGGAAAAAACTCGTTATTGATCACATGCTAAGTA ATCTCTGTTGAAAGGACAGAGAATTCAATTGCTAGAAGGATAGAATTACCTATCTGTTGTGCAAGCGGTCAGGAGAGGAG GGTACTGCTCTTTTACTTGTTGTGTAATAGCTTCTATCAGTTTCACTGGTAAAGCTTTTCCTCCATACTGGAGGCATGAG TTTGTGTACATGTTCCACTTTTCCTAACCTAGCACCCAATACTTCATGGTTCAAAACCAAAATGCTTAATAATATCAGGA AGACACACCCCATTTGAGACCTTGAAACTGTCATCACTTCACCACAATTGTCAAATATCATTTAGAAATCTCTTCTGGCT TCTCTGAACTAAGAAATGAAGAAAGGAAAGATCAAGAACAGGTGTGGGAGTGGCTCATACCAGAAATAATCAAACCAGAC AACACATGATATCACTTATAAGAATGTGTCTAAGATCAGTGCTTTTGAG
CDS sequence (LotjaGi1g1v0774300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCATCCTTCAAACTTGGTTTCTTCCTTCTTGCATGTGTCTTTGCTTTCCTCTTTCTTTCTACTCCAACTCAGTGCAA AGATGAGGTGGATAGTGTATACAAGGGAATCAATAGCTTCAGGCAGACTAAGAACCTTTCACCCCTGAACCGTGTTCCCA AGGCATATTGTTTAGCAGATGAGATAGCAGAAGAAATGGAAGACATACCATGTGAACAAGTGAGTCAATACTACCCTGGT GGGAGCATGCAAATCCCAAAATTGCAGAAGCACATTGATAAATGTGACATCAACATCACCACCACAAGTGATGGGGTCAT TCTCCCAGTTTGTGTGGCCAAATTGGAACCCACTGTTGTGCTTTCCAACTACACTCATTCTGATGTGTATGCTAAGTATC TTAACAATTCCAAGTACACAGGTGCAGGGCTTGGCTCAGAGGATGATTGGATGGTGCTTGTTCTCACTACCAACACACCC ACTGGAACTTTCGCTGCTGATGCATCTACTTTGCATGCTGGGGTTGAGTTTTTGCTCTTGGCTTTGTTGGTTCTGCTGAT TAACTACTTATATTGA
Protein sequence (LotjaGi1g1v0774300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MASFKLGFFLLACVFAFLFLSTPTQCKDEVDSVYKGINSFRQTKNLSPLNRVPKAYCLADEIAEEMEDIPCEQVSQYYPG GSMQIPKLQKHIDKCDINITTTSDGVILPVCVAKLEPTVVLSNYTHSDVYAKYLNNSKYTGAGLGSEDDWMVLVLTTNTP TGTFAADASTLHAGVEFLLLALLVLLINYLY
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 189 | 189 | 2.3E-71 | – | |
| Phobius | 1 | 26 | 26 | - | – | |
| SignalP_GRAM_NEGATIVE | 1 | 26 | 26 | - | – | |
| SignalP_EUK | 1 | 26 | 26 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 28 | 28 | - | – | |
| PANTHER | 1 | 189 | 189 | 2.3E-71 | – | |
| Phobius | 1 | 5 | 5 | - | – | |
| Phobius | 6 | 21 | 16 | - | – | |
| TMHMM | 7 | 24 | 18 | - | – | |
| Phobius | 22 | 26 | 5 | - | – | |
| Phobius | 27 | 170 | 144 | - | – | |
| TMHMM | 168 | 190 | 23 | - | – | |
| Phobius | 171 | 190 | 20 | - | – | |
| Phobius | 191 | 191 | 1 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0774300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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