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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0775300 |
| Transcript ID | LotjaGi1g1v0775300.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Basic helix-loop-helix transcription factor; TAIR: AT1G72210.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein; Swiss-Prot: sp|Q9C7T4|BH096_ARATH Transcription factor bHLH96; TrEMBL-Plants: tr|A0A0R0F2U2|A0A0R0F2U2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0775300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:134748780..134751905) extracted from Lotus japonicus Gifu genome v1.2.
ATTTAATGTTGCAAATCCCTTCTCTCCTCACATTCTCAAATTCCACTTGTATCTTTGTCTGCCAAATACAAGTTCTACTC TATTTCACGTGCAAGATACTGTCCATATTTTTTATCTTCACCTCAATGCCCTTTATATATAAGCTCAAAAGTACTGAAGT GAACACCACATCAACATGGCTTTTTAAATATTCTTCATCTTCTTCTTTTGCTGCATCAAAATCCTGTGCATGTGTGAGAA AGGTAAGAGCCATGGCATTAGAAGCAGTAGTGTATCCACAACCACAAGACCCGTTTGGTTATGGAATTAAAGACCACAAC TTGTTAGCAGATGTTGAATTAAGCAACTGGGGCTACGAGGATTTCAACTTAAACCTTGAAAATGAAGAACAACAAGGTGG TTCTATTTCTATCTGCAGTTTTCTCGAGAACCAAACAGAAAATTACCCTTGTGTAGATTGGAGTCCACAATCCATGGAAG TGGAACTACCACACAAGAATGAGCAGAACATGTCAAATCCATCTTCAGATGCCAGCAACTGCAACACTCACAACTTAGAT AGCTCAACTTCAACCCCTTCTCCTCCCAAGAGGCGCAGAGCCAGAAGCAGAAAGAACAAGGAAGAAATTGAGAACCAGAG AATGACTCACATTGCTGTAGAGCGCAACAGAAGAAAGCAAATGAATGAGTATCTCTCTGTTCTTCGCTCAATCATGCCTG AATCTTATGTCCCAAGGGTACTTCATTTAAGTTTTTGTTGTTTATAACATGTTTGTATCAGTTTCTCTTTCGTCAGAATC AATTATAACATCCAGAAGCTGCTAGTACGAATCAACTACTAATAGAAGCTTCTTATCAGAATTGATTTTGGGTCATGCTT AAAAATATGATTTTGCTTTTGGGTTACTTAAAGTTTTTTTTTCTTCACTGATGAGTGCAGGGTGATCAAGCATCAATTAT TGGGGGTGCTATTAATTTTGTTAAGGAGCTTGAGCAGAAGCTGCAATTTCTAGGTGTTCAGAAAGAAAAGGAGGGGAAAT CTGATGTAATGGCAATTGCAAATGCAAATTCAAATAAGCCCTTTTCTGAGTTCTTCACCTTTCCACAGTACTCAACAAGT GGTGGTAGTGGCTGTGAAACTTCCACAGGCAAGGGTGAACAATTGAGTGCAGTTCAATCTGGGATTGCTGACATTGAAGT GATAATGGTGGAGAGCCATGCAAATCTCAAGATAAGATCCAAGAAATTTCCAAAGCAGCTCTTGAAGATGGTCTCTAGTT TGCATGGTATGCGTCTCACAATCTTGCACCTGAATGTCACTACCACTGGAGAAATTGTCTTATACTCTATCAGTGTTAAG GTTTGTCTATTGTGTCTTGTTTTGTTCACTTTCCACAAACACTTTAGCTGTGTGTCTCTCTGGCTAAAGTGAAGTGTGTT GTTGAAAAACTTTGTTGTAGGTGGAAGATGATTGCAAGCTGGGATCAGTGGATGAGATAGCTGCAGCTATATATCAAATG CTGGATAGGATTCAACAAGAGTCAAATTTGAACTAAGATCTAAACTTGAACTAAGTGCATGTTTGTTACATGGTAGATTT TCATGGTGGAAAGATAATTGATTATGGGAGAAGCTACTCCAAGTAGCTTTTGTGGTAGCAGAATTGATTTTAATGATCTG AACGTGAATCCAAACATATATAATTTGAAGTTTGAACCTTTCTTTTTAACCTCAAGACCTACCCTATTGGTGATGGTGGA TATTAATTTCTCTCTTTTTTCCTCTTGTACCTAATTATTGCAATGGCTGTTCATTTCTCCCTTTGTTAATCTAATGATAG TGCCTCCATGTGGGGGCTCCTTGTTGGAAGTTTTTGGTTTTATTCCTTCTTATATCTGTCTTTCTTGCTAGCTACTTTTG ATATGTTTTCTCTTTTCTACCTGTGTTCTATTTTTCTATGGGTGCGGGACATGCCTGAGAAGGTTGTGAGTAGCTTCTAT AAGTGATCACAACACCAAAATCAATTCTGGGGTTAAGCTTCTTGAATATGTTTTGGTGATAGAATTGATTCTGAGAAAAA AAAAACTGATTCAAACATGCAAGTTGTGTATTGTGTTTTTGACATATTAGAGTGTGGGTCAATAAATTTTGCCTACCTAT ATTTCATAGTGGTAGGTCCTTTCGGTCTCAACCACGAGCCACATAGTCACACCCAAGTTGATAATATATCTAAACAAATT TGAATGGAAATGGTAGGAAGAGATTTCAAGAGATTTTCACATACTATTTAGTCCTTTTTTTTTTCCTTTTATTTGTTTTA GTTGCAATTTTTACAGCTAAACTGTAGTTGAAAAAAAATCCGGATCTGATATTCATTCTTGTCTCTTAATCAACAGTAGC TAATGTGAGATAAACACCAACTCAACTTCATTAGGGAGTTCCTTTTCTTCAAATGCAAGGAACAGAAGGGGTTTAAGACT CCAAATCTTCAAGATTCTATATAATTCCCAAAAACATCAGAATTATCTAATTAATCAGCACTGCACTTTTCTCAGAGCTA CTTTTTTTATGATTTGACTCGAGCATTACTTTAGTAATTTTCTGTAAAATTAATTAAACAAAAAATAACAAGAAATCAAA TTTGCATTATATTCTGAAGGAAAGCTGACATGATAGTGTGTTTTTGTATTTACGGTCAAATTGAAAAAAAAGAAACACGT TCATTCCAATCACATAAGAGACTGAATTGGCCGAAAAGCACATTCAAGTTGTTGAAACGTGTGCTAATAGAAATACAAAC ACAACCTAGACTTGGAGCAAAAGGTAAAAGGGAAATAGTTTTATCTGCTCTACATGTGGAGTTGCATTGGAAGAATCACA ACTTTAGAAGAGCTAAACTTTCCCTGCATGCATTGATTTTCTATGCTTCACACAGAAGAACAGAACCAAGAAGATAAGGT CGTCAACACTATATATCATCATTATCAAGATGACTGAATCAAATGAAACATAGAATCTACAGATAAATGTAGCTTCTAAA TGTACATGTATTATATGATGGAATTCTTTTCTAAAACTTCTACTTTTACATAAATTTCAAAAAGAGATCAATGACAAGTA TCATCA
CDS sequence (LotjaGi1g1v0775300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTGCAAATCCCTTCTCTCCTCACATTCTCAAATTCCACTTGTATCTTTGTCTGCCAAATACAAGTTCTACTCTATTT CACGTGCAAGATACTGTCCATATTTTTTATCTTCACCTCAATGCCCTTTATATATAAGCTCAAAAGTACTGAAGTGAACA CCACATCAACATGGCTTTTTAAATATTCTTCATCTTCTTCTTTTGCTGCATCAAAATCCTGTGCATGTGTGAGAAAGGTA AGAGCCATGGCATTAGAAGCAGTAGTGTATCCACAACCACAAGACCCGTTTGGTTATGGAATTAAAGACCACAACTTGTT AGCAGATGTTGAATTAAGCAACTGGGGCTACGAGGATTTCAACTTAAACCTTGAAAATGAAGAACAACAAGGTGGTTCTA TTTCTATCTGCAGTTTTCTCGAGAACCAAACAGAAAATTACCCTTGTGTAGATTGGAGTCCACAATCCATGGAAGTGGAA CTACCACACAAGAATGAGCAGAACATGTCAAATCCATCTTCAGATGCCAGCAACTGCAACACTCACAACTTAGATAGCTC AACTTCAACCCCTTCTCCTCCCAAGAGGCGCAGAGCCAGAAGCAGAAAGAACAAGGAAGAAATTGAGAACCAGAGAATGA CTCACATTGCTGTAGAGCGCAACAGAAGAAAGCAAATGAATGAGTATCTCTCTGTTCTTCGCTCAATCATGCCTGAATCT TATGTCCCAAGGGGTGATCAAGCATCAATTATTGGGGGTGCTATTAATTTTGTTAAGGAGCTTGAGCAGAAGCTGCAATT TCTAGGTGTTCAGAAAGAAAAGGAGGGGAAATCTGATGTAATGGCAATTGCAAATGCAAATTCAAATAAGCCCTTTTCTG AGTTCTTCACCTTTCCACAGTACTCAACAAGTGGTGGTAGTGGCTGTGAAACTTCCACAGGCAAGGGTGAACAATTGAGT GCAGTTCAATCTGGGATTGCTGACATTGAAGTGATAATGGTGGAGAGCCATGCAAATCTCAAGATAAGATCCAAGAAATT TCCAAAGCAGCTCTTGAAGATGGTCTCTAGTTTGCATGGTATGCGTCTCACAATCTTGCACCTGAATGTCACTACCACTG GAGAAATTGTCTTATACTCTATCAGTGTTAAGGTGGAAGATGATTGCAAGCTGGGATCAGTGGATGAGATAGCTGCAGCT ATATATCAAATGCTGGATAGGATTCAACAAGAGTCAAATTTGAACTAA
Protein sequence (LotjaGi1g1v0775300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLQIPSLLTFSNSTCIFVCQIQVLLYFTCKILSIFFIFTSMPFIYKLKSTEVNTTSTWLFKYSSSSSFAASKSCACVRKV RAMALEAVVYPQPQDPFGYGIKDHNLLADVELSNWGYEDFNLNLENEEQQGGSISICSFLENQTENYPCVDWSPQSMEVE LPHKNEQNMSNPSSDASNCNTHNLDSSTSTPSPPKRRRARSRKNKEEIENQRMTHIAVERNRRKQMNEYLSVLRSIMPES YVPRGDQASIIGGAINFVKELEQKLQFLGVQKEKEGKSDVMAIANANSNKPFSEFFTFPQYSTSGGSGCETSTGKGEQLS AVQSGIADIEVIMVESHANLKIRSKKFPKQLLKMVSSLHGMRLTILHLNVTTTGEIVLYSISVKVEDDCKLGSVDEIAAA IYQMLDRIQQESNLN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 22 | 22 | - | – | |
| Phobius | 23 | 45 | 23 | - | – | |
| TMHMM | 23 | 45 | 23 | - | – | |
| Phobius | 46 | 415 | 370 | - | – | |
| PANTHER | 83 | 412 | 330 | 9.3E-144 | – | |
| PANTHER | 83 | 412 | 330 | 9.3E-144 | – | |
| MobiDBLite | 165 | 208 | 44 | - | – | |
| MobiDBLite | 165 | 194 | 30 | - | – | |
| Gene3D | 197 | 276 | 80 | 9.8E-11 | ||
| CDD | 209 | 266 | 58 | 6.4143E-13 | ||
| ProSiteProfiles | 210 | 261 | 52 | 14.862 | ||
| SUPERFAMILY | 210 | 273 | 64 | 2.62E-15 | ||
| Pfam | 211 | 262 | 52 | 1.1E-9 | ||
| SMART | 216 | 267 | 52 | 8.4E-9 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein dimerization activity | The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits. |
Expression pattern of LotjaGi1g1v0775300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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