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LotjaGi1g1v0779400.1

Overview

Field Value
Gene ID LotjaGi1g1v0779400
Transcript ID LotjaGi1g1v0779400.1
Lotus japonicus genome version Gifu v1.2
Description Galactose-6-phosphate isomerase subunit LacB; TAIR: AT3G04880.1 DNA-damage-repair/toleration protein (DRT102); Swiss-Prot: sp|Q05212|DR102_ARATH DNA damage-repair/toleration protein DRT102; TrEMBL-Plants: tr|I1NC74|I1NC74_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0779400
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:135147370..135148692) extracted from Lotus japonicus Gifu genome v1.2.

CTAAATTTCATCTCACTCAGTCTCACACTCTCACTCCACTCTACTCTGAGTAGTCTCTTCCTCCGTCCATGGCAGAAACC AAAATCATCGCCGGCGCCGACGAATTAGGCACTCCTCTCAAAGACGCTCTTGTCTCCCACCTCCGCTCCCTCAACATCCA AGTCGAAGACCTCGGAGCCTCTTCCTACTATTCCGCCGGCGCCGAGGTCGGCCGCCGCGTCTCTCAATCTCTCTCCTCTT CCTCCCCCGCCCGCGGCCTCGTCGCCTGTGGCACCGGCGTCGGCGTCGCCATCTTCGCCAACAAATTCCCCGGCGTGTTC GCCGTCACCTGCCTCACCCCCGCCGAAGCCGCCAACGCCCGCTCCATCACCAACTGCAACGTCCTCGCCGTCTCCGGCAA GTACACCTCGCCGGTAACCGCCACCGAAATCCTCGACACATGGCTCAACACGGCGTTTAAGGCTCCCTGCCATGCAAACG ATGACAAACCCTGGCCACAAGAGATTGAGAGCTTCCTCGACAATTCTCTTGTCGAGATGGCGGAAATCGGTAAGGACGCG GCGGTGGTAGACACGTGTGCGGTGTGCTGCTTGGTGAAGAACCGGGAACTGAATCCGATTGATATGATTCCGGGTGGGTC GATGAAGATTCTGAGGGAGAGTCCGACCTCGGCGTTTGTGAGATTCAAGGCGGGGAGTGTGGAGCCGGCGCATCACCACA CGTTCGGGCATGATCTGGTGGTGATGGAAGGGAGGAAGAGTGTTTGGAATCTGACGAAGGAGGAGAGACACGACCTGACG GTTGGGGATTACTTGTTTACTCCAGCTGGTGATGTGCATAGAGTGAAGTACTATGAAGACACTGAGTTTTTTATCAAGTG GGATGGTCATTGGGACATGTTCTTTGATGAGGATCTTCAAACTGCTAAAGATGCTATTGATAAGGAATTAGCCAAGTAAA GTGAAGTTACTCTTTCTATGCATTTTGAAAGGGTTTTCACTTGTTCTTCAATTTGTGTGTGTATGTATTGTATGGTATTA ATAAAATGATCTTAATTATCTCTATGGGGATGTGGTTTTTTTTGTTTATCAATTGAGTCTTGTATAATGCTTGCCATATT TGAGACTTACTTGTATTAGGGTTATTTCTGTGTTTGTTTCATTTCATATGATGGAATTTAATCACACATTATATTAGCCC TTGTATGAAGTTGTTATAAGAAACATACATTCCAAGAACAAGTAACAAATTGAACCAGGAAAGTTGATGCCTTCCTGACT CACCCAATATTTGATTAAAGTTGGATGAGGATGCAGTTTCACC
Download Genomic Sequence

CDS sequence (LotjaGi1g1v0779400.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGCAGAAACCAAAATCATCGCCGGCGCCGACGAATTAGGCACTCCTCTCAAAGACGCTCTTGTCTCCCACCTCCGCTC CCTCAACATCCAAGTCGAAGACCTCGGAGCCTCTTCCTACTATTCCGCCGGCGCCGAGGTCGGCCGCCGCGTCTCTCAAT CTCTCTCCTCTTCCTCCCCCGCCCGCGGCCTCGTCGCCTGTGGCACCGGCGTCGGCGTCGCCATCTTCGCCAACAAATTC CCCGGCGTGTTCGCCGTCACCTGCCTCACCCCCGCCGAAGCCGCCAACGCCCGCTCCATCACCAACTGCAACGTCCTCGC CGTCTCCGGCAAGTACACCTCGCCGGTAACCGCCACCGAAATCCTCGACACATGGCTCAACACGGCGTTTAAGGCTCCCT GCCATGCAAACGATGACAAACCCTGGCCACAAGAGATTGAGAGCTTCCTCGACAATTCTCTTGTCGAGATGGCGGAAATC GGTAAGGACGCGGCGGTGGTAGACACGTGTGCGGTGTGCTGCTTGGTGAAGAACCGGGAACTGAATCCGATTGATATGAT TCCGGGTGGGTCGATGAAGATTCTGAGGGAGAGTCCGACCTCGGCGTTTGTGAGATTCAAGGCGGGGAGTGTGGAGCCGG CGCATCACCACACGTTCGGGCATGATCTGGTGGTGATGGAAGGGAGGAAGAGTGTTTGGAATCTGACGAAGGAGGAGAGA CACGACCTGACGGTTGGGGATTACTTGTTTACTCCAGCTGGTGATGTGCATAGAGTGAAGTACTATGAAGACACTGAGTT TTTTATCAAGTGGGATGGTCATTGGGACATGTTCTTTGATGAGGATCTTCAAACTGCTAAAGATGCTATTGATAAGGAAT TAGCCAAGTAA
Download CDS Sequence

Protein sequence (LotjaGi1g1v0779400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MAETKIIAGADELGTPLKDALVSHLRSLNIQVEDLGASSYYSAGAEVGRRVSQSLSSSSPARGLVACGTGVGVAIFANKF PGVFAVTCLTPAEAANARSITNCNVLAVSGKYTSPVTATEILDTWLNTAFKAPCHANDDKPWPQEIESFLDNSLVEMAEI GKDAAVVDTCAVCCLVKNRELNPIDMIPGGSMKILRESPTSAFVRFKAGSVEPAHHHTFGHDLVVMEGRKSVWNLTKEER HDLTVGDYLFTPAGDVHRVKYYEDTEFFIKWDGHWDMFFDEDLQTAKDAIDKELAK
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Gene3D
G3DSA:3.40.1400.10
1 140 140 8.2E-38
IPR036569
PIRSF
PIRSF011609
2 294 293 9.2E-149
IPR012100
PANTHER
PTHR30345:SF0
3 294 292 1.3E-131 –
PANTHER
PTHR30345
3 294 292 1.3E-131
IPR003500
SUPERFAMILY
SSF89623
4 136 133 3.53E-31
IPR036569
Pfam
PF02502
6 133 128 6.7E-28
IPR003500
SUPERFAMILY
SSF51182
120 283 164 9.21E-18
IPR011051
Gene3D
G3DSA:2.60.120.10
185 295 111 2.2E-21
IPR014710
Pfam
PF07883
203 261 59 3.4E-7
IPR013096

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005975
Biological process Carbohydrate metabolic process The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule.
Subterm of
GO:0016853
Molecular function Isomerase activity Catalysis of the geometric or structural changes within one molecule. Isomerase is the systematic name for any enzyme of EC class 5.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0779400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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