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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0779800 |
| Transcript ID | LotjaGi1g1v0779800.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | tRNA pseudouridine synthase d, putative; TAIR: AT3G04820.1 Pseudouridine synthase family protein; Swiss-Prot: sp|Q08647|PUS7_YEAST Multisubstrate pseudouridine synthase 7; TrEMBL-Plants: tr|I1NC79|I1NC79_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0779800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:135164067..135171900) extracted from Lotus japonicus Gifu genome v1.2.
GGGAAACCGCATAACTGTGCAGCAGCGTGTAGCAGTAGCAGTAGCAGTAGCATAGCATGGTGGTAACTTGTTCCATCACT GCTCTAAGCTAAAACCCTAATCGGTGATGGCCATGAAAACCCTTGAAGAACACGACGTAGGCATCTGCTCCTACATTTCC AACCTCCCTGGCTTCCGTGGAGTGTTGAAGCAAAGGTCTCTTTATTATTATCTCACACTGCAAAAAAAATTGAGCATCAC CATTTTTATTGTTTAATAGCTTTGAATTTGATCCAGGTACTCTGATTTTATTGTGCATGAGGTAGACACTGATGGAAACG TTGTTGAGTTGTCATCACTTGATGCCCCTGAAGAGGTGCTAGACATGATTTAGCTTCATTGATGAATTAATTGATTTTTG TTTGTAGTTTTTTGACATTTTTGTGCTCATTTCAGAGTGTTCAGGAAAATGGAACAAGTGCAACTGCAACTGATACTGCA GTGGTGAGTTATGCCTCTCAAATTGAAGCTTTTAAGTCTCTTGCTGGGGATTCTGATGCAGCCCTTTTGGAGGAATTTAT TAATCAAACTAAAGCTGCTGGAGGAGGAGAAGACAGTGTTTCTCCTGTTATTCTTTCTCCAGATTCGGATAAATCTCATC GAACGGTTAGTACGAGTTTTGTGGATTTCTTGTTCTATTACTTAGATTAGATTTGGGAATTGGGATGCATGTGTGAAAAT ATGCCTATATAGTTACTAGTTAGTACTTTGATATTGGATCAAAGACTAGGGATTAGGGCGTCTCGTTACAAATGGATTGA AATTTTCGAAAGAGATTATTTGTGTTTTGGATTGAGACACGGGGTCGAAAATTGAATCCTTTTGGTTTTAACTTCATTTG TTTTTTAAGTTTGGTGCCCTGTCCATCATAATTTGATTTTTACATTTAATTGAGTTCAGAAAGATGAGAATGGTTTGATC CTGTTATAGTGGCAACATGCAAGCATAGTGAATTCATTTTGTTGTTTCATTTTTTCCAATTTAGAACATCATAAATTTTA CACTTCTTCAATCTATCAGGAAATGCATAATTTCATAAAGGAAAACTTCAAGTTCCTGGTCTCTGACACGGTCGATGGAC CGGATGCTTCATCAAAATGCATCCGTGTGAGATTGGATTCTGGTGGATCCAACAACAAAGGAAAAAACTCCAAGAAACGC AAAGGAAGAGATGATAAGCCTTTTGATAGCAGAGGTTCAGAAAATTGGCCACAAATTGGGGGCAAGTTCCTCAGGTAAAA TTGATCAGGTGTTTTGTTTTATAGAGTATAAACTAAGCAGTCCTCAATGTCTTCCATGCAGTTTTCTTAATTATATTTCT ACGTAGATTCTATTACGTACTTAGATATCCAGCCTTAATGTACCCTGCACACAATATGGACTTCATTTCATGCTGATTCT TGAACTTATTTAATATTTATTGCTGTCAGTTTTACCCACACAAGTGGTGTATTATAACAAGTAGTAAAGAGATGAGTAGA AGTATAATTTGCACAAGGAATTGTAACTAAATTCATTTAGTACTGAAATCGGAACTTCTTACTCTTATCCAAACAACCAG TGGCTGAGAGAATTGGACTTGAGGAAACTATTGACGCTGCTATTTTTTTTCTTTCTTTTTTCTGAGTTTCAGACACTACT TGAAAGTGATTGCCAGCAACTCTTGGTTGCATTGTATATTATGTCACGATATATTCTCGTTTTTAAATATTGTTCTAAGT TGCTCATTGTCATCTTTTAGGTTTAATCTTTATAAGGAGAATAAAGATACTCAGGAAGCTTTGGGGGTGGTTGGAACTAT GCTTGGCATCCAGGTGTGTGTTGTTCATTGCTGGATATATTCAGTAAATTCTGATTGACAGAAGTGTCATCATCTAGGTT TTGTTTTCTTATAATTTTGTAAGGTTCATGGATGAAAAACTTTCCTCTTTCCTGTCCATTAATGGGCGTATGGGACATGT GTGATAATTGGTTTCTTTTTGCCATATTTTTTAATTTATGAATTATCTGATTGTCATATTTGTGATTGTGTATAAATTTT TCATGCCTCTGTAATCTGTACAACCCTTTGTTTCAACCTGGATATGGACGAACTTGGTATCCTTACTATTGTTAATTTTG TTATTGTTTATAGTTGTGTGAATTTTTCTGCTCATAAAATTACGATTTGTTTATGATGTAAATTGTTAGCTTTCTGTAAG ATGCATATTTTAATTGTTAAGTATCTAAGATTATACATTTGGTGAATACTCACATCTTGCTCCCCATTTATGCCTTTGTA TGATGACTGATAGGTAAGGGAGTTGAGTCTGTTTGTATTGTTCTTGCTTGCTCCTTGCTCCCTACCCACCCTCAAGAATA ATATATTTGCATAAATTAGTAAGTGCCATCAGCTCAGACTAGCATTGGTTGCTAGACAAGCTTGTTGCTTTTTAAATTTT AACTGATTGATAATTAACTTACAGCAAAGGTCATTTGGGTTTGCGGGTACAAAGGACAAACGTGCTGTCTCGACCCAAAG GGTAATAAGTTTTCACATTCTTTCTGATTTTGCATTGGACGTTCATTCTTTTTTTCATCTTCCAGCATTAAATTAATGTT CATCAGACAGATGTTTCAGTTGGTTTAGTTCTTGTTTTGCTTCTAGGTTACTGTTTATAAGCAGCAAGCAAGTAGGCTAG CTTCCCTTAACAAGAGGTTGTTTGGTATTAAAGTTGGTGATTTCTGGTAAGGTTGTTGGATTTTGAGAGCTTGATGTTCC TAGTTAGCAGTTCTTTTATGGATGATCAAATCATAAATGTTCTATTGGCCAGTTATGTTCAGGAAGGACTTTGTCTTGGC CAGCTCTCGGGAAACCGATTTACGATCACATTACGGTGAGCGCATTATCCATGCACTAAATATCACTTTTCTTCTCTTAA ACTGGCATCTCTTACTGTTATAAGTATTTTTAGCTATTGATGTATCATGTAACTGCAGCTTATTATTTGTAGCCATAACA CTGACATATCATCTCAGAGGTATTGTTGCAGATTCTGAAGATACCATAAAATCAGCTGCAGATGCCTTAGGAAGGCACGG CTTTATTAACTACTTTGGTTTACAGGTACTTACTGAGAGCCAGCAAAAATCATCTCCATGCAAGTGTATTCCTTTTTGAG ATTATATTCAAAAACCGGAGTTTCATGCTGTTGAACTCAAGTCTAAATTTCTGCATGGGAAGTGGGAACAGTTTTGTTTA AGTGTGGTTTGTTTTTCACAAAAAAACATAAAAAACTTAAACATGTTGGGAAAACCAAATTCATCTTCCCCATTTTTTTT TTCTTGTTGAAATTATTTTAAGAACAAAAATTGCATTAAAATGTAAACTTTTTTTTTCTCTTTTTCTCTTCCTGGTATAG GCCAATGTTCAAGCATTACATCTTGCAACAACATAGTATTTTAGACCGAGTCTATTGTAGGACTTTTTGCCCCTTTATAA GAAACTTATTTGTACATATATGCTCACTGCCCAGCGTTTTGGGAGTGGTTCTGTGCCAACTCATCTTATTGGAGCTGCAT TACTCCGAGGGGAATGGAAACTTACTGTGGACTTGATCCTTGATCCAAGAGAAGGAGATATCCTTTCATTGTTTCTATAT ATATATATATACATATATTATGTCTTAGTTGATTTATTGTGCTAATAGGTAATATTAGTGTATTGATTGTCTTTGTTCTT CATAACATCGTCCTTTAAATACAAAGAGACGCCATAGCCAAGGCACGCAAGTACTATAAAGAGAGTAATGATGTTGTTGG GACACTTAGGCAAATGCCTCGATATTTAGTTGCTGAAAGGGCTGTGGTGAGTTTCAAATGAAAATTATTTCTGCATTGTG TTTCCTTAATGTTGATGTGAGAGTGACGTTAATATTTTGTTTACCATTCATCCATGTATGATGCATAACCAAGTTTTTAT TGACAAATCCTCTCCAGCTGCAAAGTTTAAAAAAGTGTCCTGGAAACTACTTGCAGGCTCTGAAAGCTATTCCACGGACT TTGAGAATGATGTGAGTTATAATTATCTGAAGAGGTTAATATGTTGTGTAGTAAATGTTTGGGTAAAGTGGGGTTATATT GTGACTGGTAGTAATTTTTCTTAGTTGGAGTAATTATGTATGTAAATTGTGATGCTGAAGTTCATTTCTGTCATCAGTTT CTAGCATCATCTGTTGTTGTATAATGAATATCTTTTATTTGGATACTGAGTTATGTGCTTATATTTCAATTGTTTCTTAC TTAAGGAATCACAAATGTTTTCTTTCGCATATTTAACTTGTCTTTTATATTGATATTTTTTTTTCTTTCCATTTCAAACT AAAGATATAACTGAATGCTGTGGCTGAGGAGGTGGGCCTACCCATGCCCCACTATACTGAGTTTGAATTTGACATAATTT TATTTGAAATCTTGGTACACATGAGTTCACAGTAAGTTCATTAAGCTTGCTTACATTAGGTTATTTTGCTTTATGAGAGA ATGTTTTAGTGTTTTAATACAAAACAATGAAGTCAACACACAAATGAATAAAATTTGAAAGCTAGGAAAACGAAAGAAAT TCCTATGAAGTTTCTTAGTGGGCTATATAGGCTGTCTATCTGGTGATCTTTTACTGTGATGTGCAAAGACAAGTGTGCTA TGAAAACAAAGAGATATTATTTGAGATTATTTATTTGAAGGATAATGTTGATCTTCTTCATTTTATAATTCCATTGCTTC TGTATATTTAGGTATGTACATAGTTACCAAAGCTATTTGTGGAACCATGCAGCAAGTACAAGGGTGCAAAAATATGGTAA TGTGATCTTCAATAGTTTTCTAGATCTTCTTGCTTTATGTGGCAATTAACTTCTAATGTTACACTTACATCTCCTTACAC CCTTACTTCATTCAATACACTCTCCTTACCTTGATTATTGTTGTGGTAGTTGAAGCCAAAATATTCATTTATTAAGTTGA ATTCGATTCTACCACGTGCAGGAACTGAACAAGTAGTATTAGGAGACTTAGTATATTGCAAAGAAAATCCTTCTGGAAAT GTTAGAGAGCTCATTGGACCTGAATGTGAAGAGGACTGCAGCGGTACACATGATTCTAATAATGAAGATGAGGTCTCTCC AGATGTTCATGAAGGAATAAATAGTCATGTCAAGGTTAGTCTTGTCATTTTGGCCCATTACTGAGGAAAGCTAATATACT CAACCAATGTTGCTACTTTAGGAGTATGTCCTCTTCATATGATGTTTCTCAGAGAGAAGATGGTTTGGACATGTGTTGAG AAGATCTATGGTTTATAGAAGCACCAATGAAGAGGGTAGACTAAATGGATATCCAATATTTGGAGGTAGAGGGTGATAGG GAAACTACAAGTCAAACCATTAAGAGAGATTTATATTTAAATGATTTATCATTGGACTTGATTCATGACAGGACATTAAG AGGATTTAGATTTAGATGGTTTAATAACTATTACTTTTGTTGTTGTCGTTTTAACCTCATGGGTTTACCTCTCCATCTGC AGCCCTGTTCATCAAAAGTATCAGCATGCTCAGTGAGCAATTAATATGATAAATAATCTATTGTGCAATTTTATATCAAA TTCACGAATAGAGAGCTATGTTGAACCATTTTTCTCAAATGAAGGGATGATTCCATTCAATTTTATATCAACTTCATATG ACAGGTTGTGAATGCTGAAGATCTTGATTCGAGATGCTATACGATTGAAGACATTGTCCTTCCTATGCCAGGGTAAGCTT GACCAACATTACCATCTAATGTTGGTCAGATTCTATGATTCATACAACTCAGATCTTCTTAACCAATATTTTGCTCTCCA TTTTTTTTTTTACTTTTTTTACATTTTCCTATTTCATATGTTGCAGTTCACGGGTAGATTTTCCAAGCAACGACGTTGCC AAAGTTTATCATCATTTGGCAGATAAAGTACGTACCAATTTGGTCTCTTGTTCTAATATCCTGGTTTTGTATGCATATGA TTAGAAGTGATATCTGAAGGCCTAAGACTGAATGTCATGTCAGTTAACTTTTGAACTTCGATGCGGATGTTTAGTTTGTC TGCATTTGGGGTACTTGAGCAATTAATTCTATCTCATGATGGGCAAAATTAAAAAATTGTCACTTCTTAGGTTCTCTTAT TATGTCAAGCCTGAAATATTCCTTTTATCATGAAGAATGATCTTAAATTTGAGATAAGTTGTTTTTTTATAGCTTTAGGT GATTGCTAAAATCATGCCTTGGAAGCTATGGGCTATTTTTCTGATATGCTATAGCACACCAACTTGAAGATCCTCTGTAT GTGTTAAAAATTAACATTCACTTGTTGACTATGACACTTAGAACTGGCAAGGAGACGTTATTACATAAGGACAGAGCGCG TTCATTGCTTCTCTTCCCCCCTTCTCTCCTCTTCCTCCTTCTGTTACTTCTGAAAGTATGGTCAGCTAGACCTACATAGT GTATATATCTGTCTGGGTTGCTGTTCTAACGTTTTTGCAACCTGCTTTAATGTTATTGTTCAATAGATAGTTTTCTTTTT CGCTACTTACTGTTATTCACCTGTTTGTTTATACTTGTCAGGACGGAATCAATTTAACAGAGAGCGTGCATAATGTGAAG TATGTAATAAGAATCTCAACTCAAATCTCAATGAGTCTGCGTCTACGTTCATTGTCTATCTTACCTTTTTTTTTTTTGTC TCTCCTGCCTGTTTTCTTACTGTTGTTCATTCATACTTGTTACTAGGGAATTCTCAATAACTAGTGTGACTGGAAGTTAC AGGAGGGTTTTTCAGAAACCGATAAATTTTGAATGGTACGTACCTAAGTTAACCCTCCACTTGATTGCATAGACTCTTAT TTTCACCGACTTTGCTTTTACATGGAGTTCTCTCTAATTGAATAATGTCTTTGATTGTCTTCAATTGCAGGGAATTACTT ACATATAGTGATAGTAATAAACCATTGGCAGAGACAGATTTAGAAAAAATCAGCAAGTCTAAACCTATAAACGATGCCGA ACAAGAGGGTGCAAATGGGAAAAAGGAAGAAAACTTTGTTAGCACGACACAGTTAGAGAGCTCTGATGATGGTGCAAAGG TTGAAAATGATTATAATGAGATTGTAGGTGAGGAGGTGATATTACCTCCTGATGAATCTGCTGGTGACTTGAGGTCTCAA AACTCCCAAATAGCTCTCAAATTGAGCTTTACTCTTCCTTCTTCCTGTTATGCAACAATGGCGATAAGAGAGCTGCTGAA GACTTCAACATCTGTAAGATTTGAAAAGCCTTGTATCTGTTTGCTTCATTCGTTTATTGGTAAAAACATATAAAAGGGGA ACATTTAATGTCTTAACCTGGCCTGCATATAAATCTGTTTTTAATGCTGTTGCAGGTTGCATATCACAAGACATTAAACT AGTAGCAAGCACATAGCTACCAAATCAGCAATGTTTTTCTGCAGGAGAAAGTGATTCATAGACAGAACAGGGAGAACACA GAAAGATAAGTTCTAACTAGGCGTTACTAATTATCGGTGGATGTTATAATATATGTGTCCTGTTGGAAGAAATAGAGCGG TATCCTCTCAATTATTCTTTGTATCATGTTTGAGAACCGTGGAATTCAATGCTACTTTTATTTCTGCTGAAAATTTGAGT TGAATTTTTGCAAGTGCTATTAATGTTCAATTTTGTATAAGAAGATTTCCATGTGTTCGATTTTGTTAGAGAGC
CDS sequence (LotjaGi1g1v0779800.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCCATGAAAACCCTTGAAGAACACGACGTAGGCATCTGCTCCTACATTTCCAACCTCCCTGGCTTCCGTGGAGTGTT GAAGCAAAGGTACTCTGATTTTATTGTGCATGAGGTAGACACTGATGGAAACGTTGTTGAGTTGTCATCACTTGATGCCC CTGAAGAGAGTGTTCAGGAAAATGGAACAAGTGCAACTGCAACTGATACTGCAGTGGTGAGTTATGCCTCTCAAATTGAA GCTTTTAAGTCTCTTGCTGGGGATTCTGATGCAGCCCTTTTGGAGGAATTTATTAATCAAACTAAAGCTGCTGGAGGAGG AGAAGACAGTGTTTCTCCTGTTATTCTTTCTCCAGATTCGGATAAATCTCATCGAACGGAAATGCATAATTTCATAAAGG AAAACTTCAAGTTCCTGGTCTCTGACACGGTCGATGGACCGGATGCTTCATCAAAATGCATCCGTGTGAGATTGGATTCT GGTGGATCCAACAACAAAGGAAAAAACTCCAAGAAACGCAAAGGAAGAGATGATAAGCCTTTTGATAGCAGAGGTTCAGA AAATTGGCCACAAATTGGGGGCAAGTTCCTCAGGTTTAATCTTTATAAGGAGAATAAAGATACTCAGGAAGCTTTGGGGG TGGTTGGAACTATGCTTGGCATCCAGCAAAGGTCATTTGGGTTTGCGGGTACAAAGGACAAACGTGCTGTCTCGACCCAA AGGGTTACTGTTTATAAGCAGCAAGCAAGTAGGCTAGCTTCCCTTAACAAGAGGTTGTTTGGTATTAAAGTTGGTGATTT CTGTTATGTTCAGGAAGGACTTTGTCTTGGCCAGCTCTCGGGAAACCGATTTACGATCACATTACGAGGTATTGTTGCAG ATTCTGAAGATACCATAAAATCAGCTGCAGATGCCTTAGGAAGGCACGGCTTTATTAACTACTTTGGTTTACAGCGTTTT GGGAGTGGTTCTGTGCCAACTCATCTTATTGGAGCTGCATTACTCCGAGGGGAATGGAAACTTACTGTGGACTTGATCCT TGATCCAAGAGAAGGAGAAAGAGACGCCATAGCCAAGGCACGCAAGTACTATAAAGAGAGTAATGATGTTGTTGGGACAC TTAGGCAAATGCCTCGATATTTAGTTGCTGAAAGGGCTGTGCTGCAAAGTTTAAAAAAGTGTCCTGGAAACTACTTGCAG GCTCTGAAAGCTATTCCACGGACTTTGAGAATGATGTATGTACATAGTTACCAAAGCTATTTGTGGAACCATGCAGCAAG TACAAGGGTGCAAAAATATGGAACTGAACAAGTAGTATTAGGAGACTTAGTATATTGCAAAGAAAATCCTTCTGGAAATG TTAGAGAGCTCATTGGACCTGAATGTGAAGAGGACTGCAGCGGTACACATGATTCTAATAATGAAGATGAGGTCTCTCCA GATGTTCATGAAGGAATAAATAGTCATGTCAAGGTTGTGAATGCTGAAGATCTTGATTCGAGATGCTATACGATTGAAGA CATTGTCCTTCCTATGCCAGGTTCACGGGTAGATTTTCCAAGCAACGACGTTGCCAAAGTTTATCATCATTTGGCAGATA AAGACGGAATCAATTTAACAGAGAGCGTGCATAATGTGAAGGAATTCTCAATAACTAGTGTGACTGGAAGTTACAGGAGG GTTTTTCAGAAACCGATAAATTTTGAATGGGAATTACTTACATATAGTGATAGTAATAAACCATTGGCAGAGACAGATTT AGAAAAAATCAGCAAGTCTAAACCTATAAACGATGCCGAACAAGAGGGTGCAAATGGGAAAAAGGAAGAAAACTTTGTTA GCACGACACAGTTAGAGAGCTCTGATGATGGTGCAAAGGTTGAAAATGATTATAATGAGATTGTAGGTGAGGAGGTGATA TTACCTCCTGATGAATCTGCTGGTGACTTGAGGTCTCAAAACTCCCAAATAGCTCTCAAATTGAGCTTTACTCTTCCTTC TTCCTGTTATGCAACAATGGCGATAAGAGAGCTGCTGAAGACTTCAACATCTGTTGCATATCACAAGACATTAAACTAG
Protein sequence (LotjaGi1g1v0779800.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAMKTLEEHDVGICSYISNLPGFRGVLKQRYSDFIVHEVDTDGNVVELSSLDAPEESVQENGTSATATDTAVVSYASQIE AFKSLAGDSDAALLEEFINQTKAAGGGEDSVSPVILSPDSDKSHRTEMHNFIKENFKFLVSDTVDGPDASSKCIRVRLDS GGSNNKGKNSKKRKGRDDKPFDSRGSENWPQIGGKFLRFNLYKENKDTQEALGVVGTMLGIQQRSFGFAGTKDKRAVSTQ RVTVYKQQASRLASLNKRLFGIKVGDFCYVQEGLCLGQLSGNRFTITLRGIVADSEDTIKSAADALGRHGFINYFGLQRF GSGSVPTHLIGAALLRGEWKLTVDLILDPREGERDAIAKARKYYKESNDVVGTLRQMPRYLVAERAVLQSLKKCPGNYLQ ALKAIPRTLRMMYVHSYQSYLWNHAASTRVQKYGTEQVVLGDLVYCKENPSGNVRELIGPECEEDCSGTHDSNNEDEVSP DVHEGINSHVKVVNAEDLDSRCYTIEDIVLPMPGSRVDFPSNDVAKVYHHLADKDGINLTESVHNVKEFSITSVTGSYRR VFQKPINFEWELLTYSDSNKPLAETDLEKISKSKPINDAEQEGANGKKEENFVSTTQLESSDDGAKVENDYNEIVGEEVI LPPDESAGDLRSQNSQIALKLSFTLPSSCYATMAIRELLKTSTSVAYHKTLN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PIRSF | 1 | 692 | 692 | 1.0E-189 | ||
| PANTHER | 5 | 692 | 688 | 1.7E-251 | – | |
| PANTHER | 5 | 692 | 688 | 1.7E-251 | ||
| SUPERFAMILY | 9 | 681 | 673 | 1.14E-95 | ||
| MobiDBLite | 104 | 123 | 20 | - | – | |
| MobiDBLite | 155 | 189 | 35 | - | – | |
| TIGRFAM | 183 | 683 | 501 | 6.7E-82 | ||
| Pfam | 193 | 569 | 377 | 3.2E-71 | ||
| Gene3D | 193 | 278 | 86 | 8.1E-80 | – | |
| CDD | 196 | 679 | 484 | 5.38412E-144 | – | |
| ProSitePatterns | 230 | 243 | 14 | - | ||
| Gene3D | 279 | 571 | 293 | 8.1E-80 | ||
| ProSiteProfiles | 310 | 564 | 255 | 39.742 | ||
| Gene3D | 323 | 410 | 88 | 8.1E-80 | – | |
| Gene3D | 597 | 683 | 87 | 2.9E-6 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Pseudouridine synthesis | The intramolecular conversion of uridine to pseudouridine within an RNA molecule. This posttranscriptional base modification occurs in tRNA, rRNA, and snRNAs. | ||
| Molecular function | RNA binding | Interacting selectively and non-covalently with an RNA molecule or a portion thereof. | ||
| Biological process | RNA modification | The covalent alteration of one or more nucleotides within an RNA molecule to produce an RNA molecule with a sequence that differs from that coded genetically. | ||
| Molecular function | Pseudouridine synthase activity | Catalysis of the reaction: RNA uridine = RNA pseudouridine. Conversion of uridine in an RNA molecule to pseudouridine by rotation of the C1'-N-1 glycosidic bond of uridine in RNA to a C1'-C5. |
Expression pattern of LotjaGi1g1v0779800.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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