Transcript — View — Lotus Base

Overview

Field	Value
Gene ID	LotjaGi1g1v0780800
Transcript ID	LotjaGi1g1v0780800.1
Related isoforms 4	LotjaGi1g1v0780800.2 LotjaGi1g1v0780800.3 LotjaGi1g1v0780800.4 LotjaGi1g1v0780800.5
Lotus japonicus genome version	Gifu v1.2
Description	GDP-mannose-3',5'-epimerase; TAIR: AT5G28840.1 GDP-D-mannose 3',5'-epimerase; Swiss-Prot: sp\|A3C4S4\|GME1_ORYSJ GDP-mannose 3,5-epimerase 1; TrEMBL-Plants: tr\|A0A0L9VKP5\|A0A0L9VKP5_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0780800
Working Lj name	n.a.

Genomic sequence (LjG1.1_chr1:135308423..135312707) extracted from Lotus japonicus Gifu genome v1.2.

GGGATGAGAAAGGGAATGTTGTTGTGGCCTGTGGCTGTAACCAATCCAACAATGGCTGTGAAGAACCAATAAATGAGTGG TCATCACTTCTCACCACTTCACACTTTCCTATATATAGCCACTCAAACCTCTTCTCTTTGATTCTAAACCCACTTCAATT CCAGTCCCTTCTCAACCATTGTCTTCTTCATTCTCACTTTCTCACTTTTTAAGGTCAGATTCTTCTCAATACCCTTTTCT CTGTATCTCTTTTCTTCTCCACATTTTTGTAAAAAATTAATCTTTTTAGAAAAACAGGAACAGGGTCATCAAACAATTTT CAATTTCACACGCTTCACTTATTCTATTGGATTTTTTATAATCTTGTTACATTCCATGTTTTTGGGTATGGTGTTTCGTG TGCGGTTGTTCCAATTTGTGTCGGTTGGTGTTATTTTCCTTTGATTCTGACCCGGTTGTTCCTTAAAGACATCAACTTGC ATGAATTGCGGATTGCATGATTAGATTGTCTTATTAGGGATCATGTTATGTGCTTAATTTTCAATTTTTCATCAGTTTTG TGGTTTTCTGAATAATTATTGTGGGGTGCAGAATGGGAAGTTCTGGAGCAGAAGCTGATTATGGTGCATACACCTACAAG GAGCTTGAGAGAGAGCCTTACTGGCCATCTGAGAAGCTGAGGATTTCAATCACTGGTGCTGGTGGTTTTATTGCCTCACA CATTGCTCGCCGTCTCAAGAGTGAGGGGCATTACATCATTGCTTCTGATTGGAAGACAAATGAACACATGACTGAAGACA TGTTCTGCCATGAGTTCCATCTGATTGATCTTAGGGTCATGGATAACTGCCTCAAAGTTACCAATGGTGTGGATCATGTT TTCAATCTTGCTGCTGATATGGGTGGGATGGGGTTTATCCAGTCCAACCACTCTGTCATTATGTACAACAACACCATGAT TAGCTTCAACATGATTGAGGCTGGAAGGATCAATGGTGTGAAGAGGTTAGCTTCAACACTGAGTTTCTGTTTGTTGAGAT AATTGAACATGCATGTATTTTGTGGTGTTAGTGTCAATTACTTATCCATGGCACAATCATTGTTTTCAGGTTTTTTTATG CCTCTAGTGCTTGTATCTACCCTGAATTTAAGCAGCTGGAAACTACCAATGTCAGTTTGAAGGAGGCTGATGCCTGGCCT GCTGAGGTTTGTTGATGATCTTTTTAATTGTTTGGCTCGGTTATGTTGGTTATTATTCATTCGTGTGCTAGGGTTAGGAT GAATGTATTTAATTTTATGACTTTTTGTAGCCACAAGATGCATATGGTCTAGAGAAGCTTGCAACAGAAGAGTTGTGCAA GCATTATAACAAGGATTTTGGGATTGAGTGCCGAATTGGGAGGTTCCACAACATTTATGGCCCTTATGGGACATGGAAAG GTACGCTCTTTACTGAATTGCTAGTTTTACAGTTGACTTGTCTAACTCAATAATTGAGCAGACATTGTTGTTTTTTGTAA CTTTTAGACTTAAGAAGTTTGTTGCTTTGTTGTTTGTCCTACAGGTGGAAGGGAGAAGGCTCCTGCTGCTTTTTGTCGAA AGGCGCTTACTTCTGCTGACAGATTTGAGATGTGGGGAGATGGATTACAAACAAGATCCTTCACCTTTATTGATGAGTGC GTTGAAGGCGTACTTAGGTATGACTTTACTGATTCTGTGGCTAATGCAGCTAAATTAATGATTTCTTTGTAGGGCTTCTC ATTTTGAAATCTAAACTATGGATTTGTATTTTATTGAATGGTGAAAATGGAACTAGGGGATAGCATTTTTAGTTGCCATT AATAATTTCTGTTAATAGTTAGTTGCAGATGTAAATGATTGTAATATCTCTATTTATTCTGAAATTGCTCATGATGTTTA AGTTGATTTGTTTCAATTTTCAAATTTTGTGAGTTTTTTTTTGTTAGATCCAGCTATTAAAGACTGGGACTTTTAGAAAT AAACATTATTAGCAAAATAACAAGGATACAAACGTGTGGACATGAACACACACAACATGTAAAACATGGGAAAACTGGGA CACAATGTACATAGACATATCTGCGCGTGTATATCTGCCATATTAGTTTTTGGAAAGAGTTAATCTTGACCATATTTACA TGGTTGGATGGTATGCCCTGGCCTTGTGTGTGTGTGCGCGTGTGTGTGTGTTATTGGTACAAGGATGAGTAGAGGAAGGT GCAACAAACCCAAATGAAATATGTTGGAGATCTTTCTGAAACACATAACACTTTCTAACTTGTATATTTAAGTTGATTCT TCTGAAAGTTATTAAAAAACATAATTTTCAAATTTTGTTATAGTTGTGTGCGAGTGTTGAGTCTTATTTGAGTATCCTCT AAATGGTAAGAAGAGTTTGATGCCTGTCTAGCCTATAAAAATGATTATTTCAGTAGCACACTTTATGACGTGTAGCCTGC ATGTGTTGTATGGGTGTTGCTGTTGGAAATTTGTCCGACAGTCAGACACCACAAGAAGGAGAAGAATCTGTAATAGGACT CTGGTGCCTTTACAAAACTTAATATTTGTCTTATTTGGTTGTTGGATCAAGCATATATTAGCTTCTTTTATGTCTTTTGG TTAGTTCTTATTCCTTGGTAAGACTTATCATTGGTGTTCCTGGTCCACCTCTATGTGCAGATTGACTAAATCAGACTTCC GGGAGCCAGTGAATATTGGAAGTGATGAAATGGTCAGCATGAATGAGATGGCTGACATTGTGCTTGGCTTTGAGAACAAA AGCACACCAGTACACCACATTCCTGGCCCAGAGGGTGTCCGAGGCCGTAATTCAGACAATACACTAATCAAAGAGAAACT TGGCTGGGCTCCAACAATGAAGTTGAAGGTATTAATGTTGTGAAAATCCCCTTGTTTCCTTTTTATACAATTTATATCTA GTTCTGAGTTCATTTAATTCAGCTTAACGCTGTTCTACAATATGAATTCTCCTTTTGTTATGTCTTAATAACTTTCTACT ACCAATTTGATCACTCACATTCGAAGTAATGGAATGAGATATACTCATCGACATAGTAGACTCAAACCAAATTCCTTTTT TACCTCACCACCACTTTAATGTTCAATTTTGTAGTTCCCAGAATTTGAACTAGGTCTAGCTCTACCTTGAAAACTAGCTC AGGGGTGAAGATTGATGTACCCTATATAAAGACTTATTTAGCCATATCTCTCTAGTCAACGTTGGACTTTAACACACACC CCTCTCACCCAGATATCTAGAGCATGAAGTTTGCAGGTCTAGACATTTGCAATGAGCCATTTATGGCTGATATCCAATAA ATGGATCTCCTCTTCTATACTGTTTCTTGTGTTTCTATCCTCTTGCTTTTGTAAATTGGCTCAATCAATAATAGGATTAT GGGTTTTATTTATGGCATCTCAATTTATGTATTGCTATCTTATCTGATTTTTTTGTTTATTGCAGGATGGGCTGAGAATT ACATACTTTTGGATCAAAGAACAGCTTGAGAAAGAGAAGGCCAAAGGTGTTGATACAGCAATCTATGGATCTTCCAAAGT AGTACAGACTCAAGCCCCAGTTCAACTAGGCTCACTCCGGGCAGCAGATGGCAAAGAATGAAGTGAGCAAGTAGTCATAA TCACCTAGGTGTTTTAAGTGGAGGGTTGACTTTTTATGCTGCTATTTTTTAGAGATCTTTGGATATGGTTAATTAGCTAT TGAGATTGATTTTGGAGCTTGTTCACGTGTTTGAATAGAAGCTGTGCTCCACTTGAATTTTATGTTTGCTTGTTTGAGGG AATGCTTGGTGCTTAAGGCGGTGTCACTGCAATACAAATTCGAAAGTATGTGTTTTAAAAGGTTGAATAATTGATTTACA AAGCATTGTGTTGTTTTCTAATTTTCTTCCATATGAATTTCAATTGTTATTGGGTCAGTATAATGAATTTCAATATGGAT TTAAATGGTTCTTAAAAAAGGAATATCGGCTTAGGACAAAATAGTGAGATAAGTAGGGCCAGAATTTTTGTTTTCTCATC GAAAACCAATCATTGTGTGTTCAGAAACTTTGTAATTTTTCACCTTTAAGGAAGAAATGATTTTGGTTGAAGTTACTAGA AGTAGCTTTATGCTCTGTTTGTCTAGGGAAGTTAGTGGGAAGGAAGTTGGTAGGAAGGAAGTGTAGGTTTTCCATCTGTT TGGAACACCATGGAAAATAGATGGGAGGGTAAATAGTACCTGTGG

Download Genomic Sequence

CDS sequence (LotjaGi1g1v0780800.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGGAAGTTCTGGAGCAGAAGCTGATTATGGTGCATACACCTACAAGGAGCTTGAGAGAGAGCCTTACTGGCCATCTGA GAAGCTGAGGATTTCAATCACTGGTGCTGGTGGTTTTATTGCCTCACACATTGCTCGCCGTCTCAAGAGTGAGGGGCATT ACATCATTGCTTCTGATTGGAAGACAAATGAACACATGACTGAAGACATGTTCTGCCATGAGTTCCATCTGATTGATCTT AGGGTCATGGATAACTGCCTCAAAGTTACCAATGGTGTGGATCATGTTTTCAATCTTGCTGCTGATATGGGTGGGATGGG GTTTATCCAGTCCAACCACTCTGTCATTATGTACAACAACACCATGATTAGCTTCAACATGATTGAGGCTGGAAGGATCA ATGGTGTGAAGAGGTTTTTTTATGCCTCTAGTGCTTGTATCTACCCTGAATTTAAGCAGCTGGAAACTACCAATGTCAGT TTGAAGGAGGCTGATGCCTGGCCTGCTGAGCCACAAGATGCATATGGTCTAGAGAAGCTTGCAACAGAAGAGTTGTGCAA GCATTATAACAAGGATTTTGGGATTGAGTGCCGAATTGGGAGGTTCCACAACATTTATGGCCCTTATGGGACATGGAAAG GTGGAAGGGAGAAGGCTCCTGCTGCTTTTTGTCGAAAGGCGCTTACTTCTGCTGACAGATTTGAGATGTGGGGAGATGGA TTACAAACAAGATCCTTCACCTTTATTGATGAGTGCGTTGAAGGCGTACTTAGATTGACTAAATCAGACTTCCGGGAGCC AGTGAATATTGGAAGTGATGAAATGGTCAGCATGAATGAGATGGCTGACATTGTGCTTGGCTTTGAGAACAAAAGCACAC CAGTACACCACATTCCTGGCCCAGAGGGTGTCCGAGGCCGTAATTCAGACAATACACTAATCAAAGAGAAACTTGGCTGG GCTCCAACAATGAAGTTGAAGGATGGGCTGAGAATTACATACTTTTGGATCAAAGAACAGCTTGAGAAAGAGAAGGCCAA AGGTGTTGATACAGCAATCTATGGATCTTCCAAAGTAGTACAGACTCAAGCCCCAGTTCAACTAGGCTCACTCCGGGCAG CAGATGGCAAAGAATGA

Download CDS Sequence

Protein sequence (LotjaGi1g1v0780800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MGSSGAEADYGAYTYKELEREPYWPSEKLRISITGAGGFIASHIARRLKSEGHYIIASDWKTNEHMTEDMFCHEFHLIDL RVMDNCLKVTNGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMIEAGRINGVKRFFYASSACIYPEFKQLETTNVS LKEADAWPAEPQDAYGLEKLATEELCKHYNKDFGIECRIGRFHNIYGPYGTWKGGREKAPAAFCRKALTSADRFEMWGDG LQTRSFTFIDECVEGVLRLTKSDFREPVNIGSDEMVSMNEMADIVLGFENKSTPVHHIPGPEGVRGRNSDNTLIKEKLGW APTMKLKDGLRITYFWIKEQLEKEKAKGVDTAIYGSSKVVQTQAPVQLGSLRAADGKE

Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
PANTHER	PTHR43574 View details on PTHR43574 Search for proteins/transripts with this domain View external data on PTHR43574	6	361	356	1.0E-237	–
PANTHER	PTHR43574:SF18 View details on PTHR43574:SF18 Search for proteins/transripts with this domain View external data on PTHR43574:SF18	6	361	356	1.0E-237	–
SUPERFAMILY	SSF51735 View details on SSF51735 Search for proteins/transripts with this domain View external data on SSF51735	24	344	321	9.77E-76	IPR036291 Show description in modal box View details on IPR036291 Search for proteins/transripts with this domain View on EBI InterPro Service
CDD	cd05273 View details on cd05273 Search for proteins/transripts with this domain View external data on cd05273	29	352	324	0.0	IPR033890 Show description in modal box View details on IPR033890 Search for proteins/transripts with this domain View on EBI InterPro Service
Pfam	PF01370 View details on PF01370 Search for proteins/transripts with this domain View external data on PF01370	31	271	241	2.2E-45	IPR001509 Show description in modal box View details on IPR001509 Search for proteins/transripts with this domain View on EBI InterPro Service
Gene3D	G3DSA:3.40.50.720 View details on G3DSA:3.40.50.720 Search for proteins/transripts with this domain View external data on G3DSA:3.40.50.720	33	323	291	7.6E-117	–
Gene3D	G3DSA:3.90.25.10 View details on G3DSA:3.90.25.10 Search for proteins/transripts with this domain View external data on G3DSA:3.90.25.10	103	336	234	7.6E-117	–

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

GO term	Namespace	Name	Definition	Relationships
GO:0003824 View details of GO:0003824 AmiGO InterPro QuickGO	Molecular function	Catalytic activity	Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.	Subterm of View details of GO:0003674
GO:0047918 View details of GO:0047918 AmiGO InterPro QuickGO	Molecular function	GDP-mannose 3,5-epimerase activity	Catalysis of the reaction: GDP-mannose = GDP-L-galactose.	Subterm of View details of GO:0016857
GO:0050662 View details of GO:0050662 AmiGO InterPro QuickGO	Molecular function	Coenzyme binding	Interacting selectively and non-covalently with a coenzyme, any of various nonprotein organic cofactors that are required, in addition to an enzyme and a substrate, for an enzymatic reaction to proceed.	Subterm of View details of GO:0048037
GO:0051287 View details of GO:0051287 AmiGO InterPro QuickGO	Molecular function	NAD binding	Interacting selectively and non-covalently with nicotinamide adenine dinucleotide, a coenzyme involved in many redox and biosynthetic reactions; binding may be to either the oxidized form, NAD+, or the reduced form, NADH.	Subterm of View details of GO:0000166 View details of GO:0050662

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Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0780800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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LotjaGi1g1v0780800.1