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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0780800 |
| Transcript ID | LotjaGi1g1v0780800.3 |
| Related isoforms 4 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | GDP-mannose-3',5'-epimerase; TAIR: AT5G28840.1 GDP-D-mannose 3',5'-epimerase; Swiss-Prot: sp|A3C4S4|GME1_ORYSJ GDP-mannose 3,5-epimerase 1; TrEMBL-Plants: tr|A0A0L9VKP5|A0A0L9VKP5_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0780800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:135309015..135312096) extracted from Lotus japonicus Gifu genome v1.2.
ATGGGAAGTTCTGGAGCAGAAGCTGATTATGGTGCATACACCTACAAGGAGCTTGAGAGAGAGCCTTACTGGCCATCTGA GAAGCTGAGGATTTCAATCACTGGTGCTGGTGGTTTTATTGCCTCACACATTGCTCGCCGTCTCAAGAGTGAGGGGCATT ACATCATTGCTTCTGATTGGAAGACAAATGAACACATGACTGAAGACATGTTCTGCCATGAGTTCCATCTGATTGATCTT AGGGTCATGGATAACTGCCTCAAAGTTACCAATGGTGTGGATCATGTTTTCAATCTTGCTGCTGATATGGGTGGGATGGG GTTTATCCAGTCCAACCACTCTGTCATTATGTACAACAACACCATGATTAGCTTCAACATGATTGAGGCTGGAAGGATCA ATGGTGTGAAGAGGTTAGCTTCAACACTGAGTTTCTGTTTGTTGAGATAATTGAACATGCATGTATTTTGTGGTGTTAGT GTCAATTACTTATCCATGGCACAATCATTGTTTTCAGGTTTTTTTATGCCTCTAGTGCTTGTATCTACCCTGAATTTAAG CAGCTGGAAACTACCAATGTCAGTTTGAAGGAGGCTGATGCCTGGCCTGCTGAGGTTTGTTGATGATCTTTTTAATTGTT TGGCTCGGTTATGTTGGTTATTATTCATTCGTGTGCTAGGGTTAGGATGAATGTATTTAATTTTATGACTTTTTGTAGCC ACAAGATGCATATGGTCTAGAGAAGCTTGCAACAGAAGAGTTGTGCAAGCATTATAACAAGGATTTTGGGATTGAGTGCC GAATTGGGAGGTTCCACAACATTTATGGCCCTTATGGGACATGGAAAGGTACGCTCTTTACTGAATTGCTAGTTTTACAG TTGACTTGTCTAACTCAATAATTGAGCAGACATTGTTGTTTTTTGTAACTTTTAGACTTAAGAAGTTTGTTGCTTTGTTG TTTGTCCTACAGGTGGAAGGGAGAAGGCTCCTGCTGCTTTTTGTCGAAAGGCGCTTACTTCTGCTGACAGATTTGAGATG TGGGGAGATGGATTACAAACAAGATCCTTCACCTTTATTGATGAGTGCGTTGAAGGCGTACTTAGGTATGACTTTACTGA TTCTGTGGCTAATGCAGCTAAATTAATGATTTCTTTGTAGGGCTTCTCATTTTGAAATCTAAACTATGGATTTGTATTTT ATTGAATGGTGAAAATGGAACTAGGGGATAGCATTTTTAGTTGCCATTAATAATTTCTGTTAATAGTTAGTTGCAGATGT AAATGATTGTAATATCTCTATTTATTCTGAAATTGCTCATGATGTTTAAGTTGATTTGTTTCAATTTTCAAATTTTGTGA GTTTTTTTTTGTTAGATCCAGCTATTAAAGACTGGGACTTTTAGAAATAAACATTATTAGCAAAATAACAAGGATACAAA CGTGTGGACATGAACACACACAACATGTAAAACATGGGAAAACTGGGACACAATGTACATAGACATATCTGCGCGTGTAT ATCTGCCATATTAGTTTTTGGAAAGAGTTAATCTTGACCATATTTACATGGTTGGATGGTATGCCCTGGCCTTGTGTGTG TGTGCGCGTGTGTGTGTGTTATTGGTACAAGGATGAGTAGAGGAAGGTGCAACAAACCCAAATGAAATATGTTGGAGATC TTTCTGAAACACATAACACTTTCTAACTTGTATATTTAAGTTGATTCTTCTGAAAGTTATTAAAAAACATAATTTTCAAA TTTTGTTATAGTTGTGTGCGAGTGTTGAGTCTTATTTGAGTATCCTCTAAATGGTAAGAAGAGTTTGATGCCTGTCTAGC CTATAAAAATGATTATTTCAGTAGCACACTTTATGACGTGTAGCCTGCATGTGTTGTATGGGTGTTGCTGTTGGAAATTT GTCCGACAGTCAGACACCACAAGAAGGAGAAGAATCTGTAATAGGACTCTGGTGCCTTTACAAAACTTAATATTTGTCTT ATTTGGTTGTTGGATCAAGCATATATTAGCTTCTTTTATGTCTTTTGGTTAGTTCTTATTCCTTGGTAAGACTTATCATT GGTGTTCCTGGTCCACCTCTATGTGCAGATTGACTAAATCAGACTTCCGGGAGCCAGTGAATATTGGAAGTGATGAAATG GTCAGCATGAATGAGATGGCTGACATTGTGCTTGGCTTTGAGAACAAAAGCACACCAGTACACCACATTCCTGGCCCAGA GGGTGTCCGAGGCCGTAATTCAGACAATACACTAATCAAAGAGAAACTTGGCTGGGCTCCAACAATGAAGTTGAAGGTAT TAATGTTGTGAAAATCCCCTTGTTTCCTTTTTATACAATTTATATCTAGTTCTGAGTTCATTTAATTCAGCTTAACGCTG TTCTACAATATGAATTCTCCTTTTGTTATGTCTTAATAACTTTCTACTACCAATTTGATCACTCACATTCGAAGTAATGG AATGAGATATACTCATCGACATAGTAGACTCAAACCAAATTCCTTTTTTACCTCACCACCACTTTAATGTTCAATTTTGT AGTTCCCAGAATTTGAACTAGGTCTAGCTCTACCTTGAAAACTAGCTCAGGGGTGAAGATTGATGTACCCTATATAAAGA CTTATTTAGCCATATCTCTCTAGTCAACGTTGGACTTTAACACACACCCCTCTCACCCAGATATCTAGAGCATGAAGTTT GCAGGTCTAGACATTTGCAATGAGCCATTTATGGCTGATATCCAATAAATGGATCTCCTCTTCTATACTGTTTCTTGTGT TTCTATCCTCTTGCTTTTGTAAATTGGCTCAATCAATAATAGGATTATGGGTTTTATTTATGGCATCTCAATTTATGTAT TGCTATCTTATCTGATTTTTTTGTTTATTGCAGGATGGGCTGAGAATTACATACTTTTGGATCAAAGAACAGCTTGAGAA AGAGAAGGCCAAAGGTGTTGATACAGCAATCTATGGATCTTCCAAAGTAGTACAGACTCAAGCCCCAGTTCAACTAGGCT CACTCCGGGCAGCAGATGGCAAAGAATGAAGTGAGCAAGTAG
CDS sequence (LotjaGi1g1v0780800.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGAAGTTCTGGAGCAGAAGCTGATTATGGTGCATACACCTACAAGGAGCTTGAGAGAGAGCCTTACTGGCCATCTGA GAAGCTGAGGATTTCAATCACTGGTGCTGGTGGTTTTATTGCCTCACACATTGCTCGCCGTCTCAAGAGTGAGGGGCATT ACATCATTGCTTCTGATTGGAAGACAAATGAACACATGACTGAAGACATGTTCTGCCATGAGTTCCATCTGATTGATCTT AGGGTCATGGATAACTGCCTCAAAGTTACCAATGGTGTGGATCATGTTTTCAATCTTGCTGCTGATATGGGTGGGATGGG GTTTATCCAGTCCAACCACTCTGTCATTATGTACAACAACACCATGATTAGCTTCAACATGATTGAGGCTGGAAGGATCA ATGGTGTGAAGAGGTTTTTTTATGCCTCTAGTGCTTGTATCTACCCTGAATTTAAGCAGCTGGAAACTACCAATGTCAGT TTGAAGGAGGCTGATGCCTGGCCTGCTGAGCCACAAGATGCATATGGTCTAGAGAAGCTTGCAACAGAAGAGTTGTGCAA GCATTATAACAAGGATTTTGGGATTGAGTGCCGAATTGGGAGGTTCCACAACATTTATGGCCCTTATGGGACATGGAAAG GTGGAAGGGAGAAGGCTCCTGCTGCTTTTTGTCGAAAGGCGCTTACTTCTGCTGACAGATTTGAGATGTGGGGAGATGGA TTACAAACAAGATCCTTCACCTTTATTGATGAGTGCGTTGAAGGCGTACTTAGATTGACTAAATCAGACTTCCGGGAGCC AGTGAATATTGGAAGTGATGAAATGGTCAGCATGAATGAGATGGCTGACATTGTGCTTGGCTTTGAGAACAAAAGCACAC CAGTACACCACATTCCTGGCCCAGAGGGTGTCCGAGGCCGTAATTCAGACAATACACTAATCAAAGAGAAACTTGGCTGG GCTCCAACAATGAAGTTGAAGGATGGGCTGAGAATTACATACTTTTGGATCAAAGAACAGCTTGAGAAAGAGAAGGCCAA AGGTGTTGATACAGCAATCTATGGATCTTCCAAAGTAGTACAGACTCAAGCCCCAGTTCAACTAGGCTCACTCCGGGCAG CAGATGGCAAAGAATGA
Protein sequence (LotjaGi1g1v0780800.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGSSGAEADYGAYTYKELEREPYWPSEKLRISITGAGGFIASHIARRLKSEGHYIIASDWKTNEHMTEDMFCHEFHLIDL RVMDNCLKVTNGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMIEAGRINGVKRFFYASSACIYPEFKQLETTNVS LKEADAWPAEPQDAYGLEKLATEELCKHYNKDFGIECRIGRFHNIYGPYGTWKGGREKAPAAFCRKALTSADRFEMWGDG LQTRSFTFIDECVEGVLRLTKSDFREPVNIGSDEMVSMNEMADIVLGFENKSTPVHHIPGPEGVRGRNSDNTLIKEKLGW APTMKLKDGLRITYFWIKEQLEKEKAKGVDTAIYGSSKVVQTQAPVQLGSLRAADGKE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 6 | 361 | 356 | 1.0E-237 | – | |
| PANTHER | 6 | 361 | 356 | 1.0E-237 | – | |
| SUPERFAMILY | 24 | 344 | 321 | 9.77E-76 | ||
| CDD | 29 | 352 | 324 | 0.0 | ||
| Pfam | 31 | 271 | 241 | 2.2E-45 | ||
| Gene3D | 33 | 323 | 291 | 7.6E-117 | – | |
| Gene3D | 103 | 336 | 234 | 7.6E-117 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Catalytic activity | Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. | ||
| Molecular function | GDP-mannose 3,5-epimerase activity | Catalysis of the reaction: GDP-mannose = GDP-L-galactose. | ||
| Molecular function | Coenzyme binding | Interacting selectively and non-covalently with a coenzyme, any of various nonprotein organic cofactors that are required, in addition to an enzyme and a substrate, for an enzymatic reaction to proceed. | ||
| Molecular function | NAD binding | Interacting selectively and non-covalently with nicotinamide adenine dinucleotide, a coenzyme involved in many redox and biosynthetic reactions; binding may be to either the oxidized form, NAD+, or the reduced form, NADH. |
Expression pattern of LotjaGi1g1v0780800.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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