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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0781800 |
| Transcript ID | LotjaGi1g1v0781800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Auxin-responsive protein; TAIR: AT3G04730.1 indoleacetic acid-induced protein 16; Swiss-Prot: sp|O24407|IAA16_ARATH Auxin-responsive protein IAA16; TrEMBL-Plants: tr|V7BQ77|V7BQ77_PHAVU Auxin-induced protein; Found in the gene: LotjaGi1g1v0781800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:135506510..135509888) extracted from Lotus japonicus Gifu genome v1.2.
ACATATGAAAGACAGGCAGAACCAAATTGATTGGGATGAAAGACATTGTCCACCACCATTAGAGGCACACCACATTTATT TTTCATTATTTTGTGATATCATCTCCCAACAAGATCCAACCATGAGAATCTCTTACACGTGGCAACATCTTCACCGCCGA TGCTCCAATTTACCACACAACACACTCAAATCAAATCTCATTCCACATTATTATATCACCAAAACCTTTAACCTCATCAC ATAAAACACAGGCCTCATTCTCCTCACCCAACATCTCAATCTCAATTCTGAAACATTGTTTAAGGTTTCTTAACTTTATT ATCTATGGAGGCAGAGAGAGACAAGTACAGCATGATCCATTTTGAAGAGACCGAGCTGCGACTCGGTCTTCCTCTGAGTG GAAAGGAAGGAGATTCCACCCTCAAGAGCACATTGAATGGAAAGAGAGTTTTTTCAGACACAAAAACTGTGGATTTAAAG CTCAATCTTTCTTCAACAAACAATGTCTTGGGCTCAGGATCTTCTTCCTCCTCTGTTTCTAAAGAGTCTAGGAACCCAGC AAAATCACCACCTGCAAAGTTAGTTCTTCTTCCTGTTCTTCCTTTTAACTTCCTCTGTTTCTTGAAGCTCTTATTGTCTC TGTCTTTAATGTTTATTGCATGCATAATGGTTTGATTAATTTTATACCATGTTTGTTTGTTCTTACGGTGAAATTATGCT TTAATTTATTACAAATTTTAGCTTCTGAGCAAACTTTAGATTCTATGCTAATTAATATAGTGGAACCAAAGATCCACTTA ATCTAAGAGGGAAAGTGTGTAGATCTTCTTAATTGGACTTATTAATGAAGGGTCATCAGTCATGCCCCTGTTTTCAAAGT ACCAAGCCTTGAAGAGAATTTGTTCAATTTCACTTTAGAGAGTTTAGAGAATTTGGGAAGTCATGAAGAAGAGGGAAGGA TTATCTTTGGTATAGGATTCCCTTTGGGATTTTTCCCATTGAAATTCTCAATTGAAAGTTAGGACACATGTGGCTTCTTT GAAATTCTCAATTATATTAACTAATCACAATGATATTTGAATTAGGCATTCCAAAATGAGGATGATTTGTCTCTAGTTTT TTTTAGGTGGAAATAGAGGGAAAAAATTGACAAGATTTAACATAGTTGTTAGAGAGTTGAGCTCTGTAAGTATTTAATTC AGGATCTAATCATTCGAAAATGCGTATGGGAATGAGTCGTTAGGAGATACATATTCACTTTATGTGATTTCCAAGTTTTG AAGAGATTAGTCTCATGTCTACTAATCTACCTTAATCTACCTTTCACAAAAAAAAAGTATAAAGGACTGTTAATGTTATT TTGTATTATGCATCCGGATTTCAAGGTGGAAAAGTAAAATGAGATCCAGATTTTAAGCAAAGAAAAGTTGGATGGTTTTG GTTGGAATTCTTGTGCGTGTGGCATGGTTCATTGTCGGGTAGACAATGGAAAAGGACAAGACACACGGAATCTTGCTTTT CTCAACCACTCAACAATTCCTCATACTCCAACCAGCCAATGAGGAAAAGAGGGAAAAAACAATAAAACTATGAAAAAGAC TAGTACTTACTTTAACATTAAGTGGGTTTGGGATTGAGTAAAAATATGAGTTTCACTTTCAATAAAAGAAAGAGTGTTGA AGAAATAGTGTTGAGGTGAGTGCCAGTAACTGTATAAAGTTTTCTAGCCTAGTGTCATGTCAAACACGGATTTGAGTTAT CTCATGGAACACGACAATGTTTGATGAAATATTGTGTCTATTTCACTTATTGAAAATTTAAAGGATTCCACATATTTAGC ATAATAAAGAGAGATAGATATGAAAACTCTACATGATGATACATAATGATGCATGAGAGAGTTTTCACATAAGATTCATG TCAAACACAAAAGTAGTACCAAATTAACCACACGATACGACTCTTGACAATTATTTTCGTGCATTATCCGTCACATTGAT TTATTAAATGCAAAAAAAAAAGAAGATAACATTATTTATTGATGTGTTTAATCTTGAATAATTTCCAGGGCACAAGTGGT TGGTTGGCCACCAGTTCGTTCATTCAGAAAGAACATTGTTAACGTTCAAAAGAGCAACAATATTAATGAAGCAGAGAAGG CCACCATCACCTCCACCGCAACTGCCAGCGGCGGCAACAACGCTGCCAACCCCGGCACGGCTTTCGTGAAGGTGAGCATG GACGGTGCACCTTACCTACGCAAGGTGGACTTGAAATTGTACAAGAGCTACCAAGAGCTCTCGGAGGCGCTGTCTAAAAT GTTCAGTTCCTTCACCGTCGCCAAATGTGGCTCCCAAGGCGTGAAGGACTTCATGAATGAGAGCAAATTGATAGATCTTC TGAATGGCTCTGATTATGTGCCGACATATGAAGACAAAGATGGAGATTGGATGCTAGTGGGTGATGTCCCATGGGAGTGA GTCTCGTTCTTATCTGCAAATTAATTCTAACACAAATAGCATATCGTAAATATGTATACTATCACATTTAGTAGTAAAAC CATAACTAATTAACATGATTCACTTTAGAATTACCTTAATCACTGCTAATTAAGATTATTTTACAGGATGTTTGTGGGAT CATGCAAGCGCCTGCGAATAATGAAAGGATCTGAGGCAATCGGGCTAGGTTAGTAATCCAATCCAAATTAATTAAGCTTC AATATCCATAGAAAATCTTGTCTTAATTGATTGATGTGTGATGATTGTAAATGTTATTTCTTAATTTGCAGCACCGAGAG CAGTGGAAAAGTGCAAGAACAGAAGCTGAAAAGTTAAGTTTTGAAGTCCAAGTTCAACAAAAAACCTGCTTGGTCGAGTC TAATTAGGAGCCAAGTCATATAATGTTTTTTTGGCAAAAAAGTTTAGAAATAATTTTCTTGTATGTATGAGAAAATATTT GGAAATTGTTATGGAGGAAAAATAATAGAGTATGTTATATATGAATGAGCTCTTGGTTGTTTCCAAGTGAAATTAAAATG TGATATTGTCTATAGTTGGTGTGCTTGTCTAATGAGAATGTCAACACATGTAGTTGTCCGTAATTGCGCGTATTGTACCG TATACGTATTAACTTTATAGTGTTTGGGTCTTATAAGCAATATATCATTTGTTAGGCACATTAGTGCAACCTGCCCTTAA TCGGTCACATTATCAGGGACTAGGACATCCAATTGGTTTGAGGAAGCAAATACACTGGATCCACGAAAATAGGGGTTAAA AAAAATAGCTATAAGCTGGGCCATACTAAAGCATATTCCTCATGCAACAAATTTTCATCAAGGACCTGTTTGACTTAAAC CTTTGGACTTTTGGTCTAT
CDS sequence (LotjaGi1g1v0781800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGGCAGAGAGAGACAAGTACAGCATGATCCATTTTGAAGAGACCGAGCTGCGACTCGGTCTTCCTCTGAGTGGAAA GGAAGGAGATTCCACCCTCAAGAGCACATTGAATGGAAAGAGAGTTTTTTCAGACACAAAAACTGTGGATTTAAAGCTCA ATCTTTCTTCAACAAACAATGTCTTGGGCTCAGGATCTTCTTCCTCCTCTGTTTCTAAAGAGTCTAGGAACCCAGCAAAA TCACCACCTGCAAAGGCACAAGTGGTTGGTTGGCCACCAGTTCGTTCATTCAGAAAGAACATTGTTAACGTTCAAAAGAG CAACAATATTAATGAAGCAGAGAAGGCCACCATCACCTCCACCGCAACTGCCAGCGGCGGCAACAACGCTGCCAACCCCG GCACGGCTTTCGTGAAGGTGAGCATGGACGGTGCACCTTACCTACGCAAGGTGGACTTGAAATTGTACAAGAGCTACCAA GAGCTCTCGGAGGCGCTGTCTAAAATGTTCAGTTCCTTCACCGTCGCCAAATGTGGCTCCCAAGGCGTGAAGGACTTCAT GAATGAGAGCAAATTGATAGATCTTCTGAATGGCTCTGATTATGTGCCGACATATGAAGACAAAGATGGAGATTGGATGC TAGTGGGTGATGTCCCATGGGAGATGTTTGTGGGATCATGCAAGCGCCTGCGAATAATGAAAGGATCTGAGGCAATCGGG CTAGCACCGAGAGCAGTGGAAAAGTGCAAGAACAGAAGCTGA
Protein sequence (LotjaGi1g1v0781800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEAERDKYSMIHFEETELRLGLPLSGKEGDSTLKSTLNGKRVFSDTKTVDLKLNLSSTNNVLGSGSSSSSVSKESRNPAK SPPAKAQVVGWPPVRSFRKNIVNVQKSNNINEAEKATITSTATASGGNNAANPGTAFVKVSMDGAPYLRKVDLKLYKSYQ ELSEALSKMFSSFTVAKCGSQGVKDFMNESKLIDLLNGSDYVPTYEDKDGDWMLVGDVPWEMFVGSCKRLRIMKGSEAIG LAPRAVEKCKNRS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 8 | 248 | 241 | 7.4E-104 | – | |
| PANTHER | 8 | 248 | 241 | 7.4E-104 | ||
| Pfam | 15 | 244 | 230 | 1.0E-83 | ||
| MobiDBLite | 57 | 88 | 32 | - | – | |
| MobiDBLite | 57 | 77 | 21 | - | – | |
| Gene3D | 129 | 248 | 120 | 6.9E-44 | – | |
| SUPERFAMILY | 131 | 234 | 104 | 2.06E-21 | – | |
| ProSiteProfiles | 135 | 235 | 101 | 24.892 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Cellular component | Nucleus | A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. |
Expression pattern of LotjaGi1g1v0781800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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