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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0785400 |
| Transcript ID | LotjaGi1g1v0785400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | U3 small nucleolar RNA-associated protein 18 like; TAIR: AT5G14050.1 Transducin/WD40 repeat-like superfamily protein; Swiss-Prot: sp|Q9FMU5|UTP18_ARATH U3 small nucleolar RNA-associated protein 18 homolog; TrEMBL-Plants: tr|G7IS79|G7IS79_MEDTR U3 small nucleolar RNA-associated-like protein; Found in the gene: LotjaGi1g1v0785400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:135795554..135798356) extracted from Lotus japonicus Gifu genome v1.2.
ATTTTGAAAAAAAAAGTAAAAACACTACTTCATATATTATAGCATAAACCCTAAAACCTGGTTATCATTCACTACTGTCA TCTCTCGTGCCACCGCCGTCAACCGGCCACGCTGCCACTACCTCATCTGCGAACGGCCGCCGTACGGAGGAGCTTCCCGC AAAGACGAGTCTCTGCACCACCAACAAGGTTACCGAGAAACTCTCGCTCTTTCCCTTCTCTATTCCCCTGTCTTTGCTTG CATATTTTTTTCTGTGTAAGGTCAAAGTTTTTGAATCTAACTATAGGGTTCATGAAGATGATTCATTCCCTTTCATATAT TATTATAGATCGCTAAAAACTATATAGGAATTAGGAATTTTCATCTGTGTCATTTTCCTCTCCTTGCATATTATGATTGT TGCCAGTGATACCACAGTGCTTTTGATTGTGATTGTAGTAGTTAGTTTACTTTGTTTCTGGTTAGTGTCAGCGGTTAGTT TACTGTGAGCTTAAACACTGATTGTGATTCTATTGGTTATTAGACTTCAACAATGAAACATCTATTATACTAGCTATATG TTCAACTGTTGTATTGAATTTGTTAATTTGAGTTGTGCTTTTATTTTGTCTGTAGATTGGCTTGTAAAAGATGAGTTTAA TATCTCAAAATACTCGCACTAAAAATGAGGCTAAGAGGGAAGTGGACACTAGAGAAAAAGAGACTGAAGCTGATACTCTG AAAGTGAACAAGAGGAAGAGAGATGGCAAGGGAGAGGAGCTGGTAGTAGAGCAAGTGAGGGAAATGAAGAAGCTGGAGAG TTTTTTGTTTGGATCTCTCTATTCCCCTCTTGAATTTGAAAAGGGAGATAATGGTGAAGTGGAGGCTGAGGCTGCTGCGA AGGTTTTTGATTTGTTTTTCACTGACCGTTCTGCAGATACTGTTGTCTCTGTTTACCAGGAGGATGCTGATCTCTCAGTT GGAAGTCGCGATGGTTATGATGCTTTGCAGAGAAAACCTGCGTGGGTGGATGAGGAGGAAGAAAATATCACTGTGAACAT CGGCAAAGTTAACAGGTTAAGGAAGTTGAGGAAGGAAGAAGATGAGAGCTTGATCTCTGGTTCAGAGTATGTGTCGAGGT TGAGGGCTCAACATGTGAAGCTCAACCGAGGAGCTGACTGGGCGCAACCTGATTCAAGGACAAAAGGAGATGAATCTTCT GATGATGAGTTGACAGGTGAAGACAATGGAGCTGTTGTGAGCCGTGGTTATGAGGATGTGGATGACATTCTCAGGACAAA TGAAGACCTGGTGGTGAAGAGCAGCTCAAAATTGTTGCCGGGGCATATTGAATACTCAAGACTTGTAGATGCAAATAAAC ATGATCCTTCTAATGGTCCCATAAATTCGGTTCAGTTCCATAGAAATGCTCAGCTTCTTCTTACTGCAGGGTTGGATCGG AAGCTTAGATTTTTTCAAATTGATGGCAAGCGGAACGCTAAAATCCAAAGCATCTTCCTTGAAGATTGCCCCATTCGAAA AGCATCTTTCTTGCCAGATGGGTCTCAGGTTATATTATCAGGAAGAAGAAAGTTCTTTTATAGTTTTGATCTTGTTAAGG GAAGTTTTGATAAAATAGGTCCTCTGGTTGGTAGGGAAGAAAAGAGTTTGGAAGTTTTTGGGGTGTCTTCTGATTCTCAA ATGATAGCCTTTGCCGGTAATGAAGGTTATATTTTATTGGTTTCAACAAAAACAAAGCAATTAGTTGGTACTTTAAAGAT GAATGGAACAATCCGTTCCTTAGCTTTTGCTGAGGATGGACAGTTGTTGAGTGCTGGTGGTGATGGCCAGGTTTACCACT GGGATCTGAAAACAAGGACTTGCATTCATAAAGGTGTAGATGAAGGTTGCATAAACAGCACGGCTCTTTGTACTTCTCCT GGTGGGGCACATTTTGCAGCTGGTTCAGACAGTGGAATTGTGAATATTTACAATAGAGAGGAATTTCTAGGGGGCAAGAG AAAGCCTATCAAAACCATTGAGAATTTGACTACAAAAGTGGATTTTATGAGATTTAATCATGACTCTCAAATATTAGCAA TCTGCTCAAGCATGAAGAGGAGCAGTTTAAAGTTGATACATATCCCATCATATACTGTGTTCTCTAACTGGCCAGCACCA AATACAAGCTTGCAGTATCCCCGCTGTCTTGATTTTAGTCCAGGTGGTGGTTTTATGGCTGTTGGAAGCTCTTCAGGCAA GGTGTTATTGTATAAGTTGCACCATTACCAGCATGCCTAAGGTGGATATGAAGTACTGGCAAGATTTGAAAGTTTTGTAG CATTTGTTTTCTTGAAAGATTTTGAGACTTGAGTTGTATTTTATTGGAATGATTACCTTATGAAGCTTTATATTTTCCTG CTTAGAAGCTAGAAATAACAAAGCTTCACATGTTTTCTAATTTATTATTTATCATCTACTCTATTTATAATTGAAATACA CTTTTATTTCCTATAGATAAACCCTTTTATTTGGACTTCACTTCCTTTTTCTCATGCAATTATAATGTTTTTTAAATGAT ATCCATGTGAGAGTAAAACGGGTTCAAGGATAGGAGGGCAGATTCATGCTCTTGCTTTTGACAGGAGGATACAATGGGAA TGGATCCTCTCATGTCATTTTTTTTTTCTCATTTTGTTACTTTTATGTCTATCTCTCTTTTCATGGATACTTTAAGCGCC CCACTTGTAACTAGTTAATACATACATATAAAGAGAGAGATAGACACAATTTTCAACTTGAGAAAAATTTGACATCAGCG AAT
CDS sequence (LotjaGi1g1v0785400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGTTTAATATCTCAAAATACTCGCACTAAAAATGAGGCTAAGAGGGAAGTGGACACTAGAGAAAAAGAGACTGAAGC TGATACTCTGAAAGTGAACAAGAGGAAGAGAGATGGCAAGGGAGAGGAGCTGGTAGTAGAGCAAGTGAGGGAAATGAAGA AGCTGGAGAGTTTTTTGTTTGGATCTCTCTATTCCCCTCTTGAATTTGAAAAGGGAGATAATGGTGAAGTGGAGGCTGAG GCTGCTGCGAAGGTTTTTGATTTGTTTTTCACTGACCGTTCTGCAGATACTGTTGTCTCTGTTTACCAGGAGGATGCTGA TCTCTCAGTTGGAAGTCGCGATGGTTATGATGCTTTGCAGAGAAAACCTGCGTGGGTGGATGAGGAGGAAGAAAATATCA CTGTGAACATCGGCAAAGTTAACAGGTTAAGGAAGTTGAGGAAGGAAGAAGATGAGAGCTTGATCTCTGGTTCAGAGTAT GTGTCGAGGTTGAGGGCTCAACATGTGAAGCTCAACCGAGGAGCTGACTGGGCGCAACCTGATTCAAGGACAAAAGGAGA TGAATCTTCTGATGATGAGTTGACAGGTGAAGACAATGGAGCTGTTGTGAGCCGTGGTTATGAGGATGTGGATGACATTC TCAGGACAAATGAAGACCTGGTGGTGAAGAGCAGCTCAAAATTGTTGCCGGGGCATATTGAATACTCAAGACTTGTAGAT GCAAATAAACATGATCCTTCTAATGGTCCCATAAATTCGGTTCAGTTCCATAGAAATGCTCAGCTTCTTCTTACTGCAGG GTTGGATCGGAAGCTTAGATTTTTTCAAATTGATGGCAAGCGGAACGCTAAAATCCAAAGCATCTTCCTTGAAGATTGCC CCATTCGAAAAGCATCTTTCTTGCCAGATGGGTCTCAGGTTATATTATCAGGAAGAAGAAAGTTCTTTTATAGTTTTGAT CTTGTTAAGGGAAGTTTTGATAAAATAGGTCCTCTGGTTGGTAGGGAAGAAAAGAGTTTGGAAGTTTTTGGGGTGTCTTC TGATTCTCAAATGATAGCCTTTGCCGGTAATGAAGGTTATATTTTATTGGTTTCAACAAAAACAAAGCAATTAGTTGGTA CTTTAAAGATGAATGGAACAATCCGTTCCTTAGCTTTTGCTGAGGATGGACAGTTGTTGAGTGCTGGTGGTGATGGCCAG GTTTACCACTGGGATCTGAAAACAAGGACTTGCATTCATAAAGGTGTAGATGAAGGTTGCATAAACAGCACGGCTCTTTG TACTTCTCCTGGTGGGGCACATTTTGCAGCTGGTTCAGACAGTGGAATTGTGAATATTTACAATAGAGAGGAATTTCTAG GGGGCAAGAGAAAGCCTATCAAAACCATTGAGAATTTGACTACAAAAGTGGATTTTATGAGATTTAATCATGACTCTCAA ATATTAGCAATCTGCTCAAGCATGAAGAGGAGCAGTTTAAAGTTGATACATATCCCATCATATACTGTGTTCTCTAACTG GCCAGCACCAAATACAAGCTTGCAGTATCCCCGCTGTCTTGATTTTAGTCCAGGTGGTGGTTTTATGGCTGTTGGAAGCT CTTCAGGCAAGGTGTTATTGTATAAGTTGCACCATTACCAGCATGCCTAA
Protein sequence (LotjaGi1g1v0785400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSLISQNTRTKNEAKREVDTREKETEADTLKVNKRKRDGKGEELVVEQVREMKKLESFLFGSLYSPLEFEKGDNGEVEAE AAAKVFDLFFTDRSADTVVSVYQEDADLSVGSRDGYDALQRKPAWVDEEEENITVNIGKVNRLRKLRKEEDESLISGSEY VSRLRAQHVKLNRGADWAQPDSRTKGDESSDDELTGEDNGAVVSRGYEDVDDILRTNEDLVVKSSSKLLPGHIEYSRLVD ANKHDPSNGPINSVQFHRNAQLLLTAGLDRKLRFFQIDGKRNAKIQSIFLEDCPIRKASFLPDGSQVILSGRRKFFYSFD LVKGSFDKIGPLVGREEKSLEVFGVSSDSQMIAFAGNEGYILLVSTKTKQLVGTLKMNGTIRSLAFAEDGQLLSAGGDGQ VYHWDLKTRTCIHKGVDEGCINSTALCTSPGGAHFAAGSDSGIVNIYNREEFLGGKRKPIKTIENLTTKVDFMRFNHDSQ ILAICSSMKRSSLKLIHIPSYTVFSNWPAPNTSLQYPRCLDFSPGGGFMAVGSSSGKVLLYKLHHYQHA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 40 | 40 | - | – | |
| MobiDBLite | 10 | 40 | 31 | - | – | |
| PANTHER | 26 | 548 | 523 | 6.5E-197 | – | |
| PANTHER | 26 | 548 | 523 | 6.5E-197 | – | |
| MobiDBLite | 172 | 201 | 30 | - | – | |
| Gene3D | 226 | 544 | 319 | 1.2E-104 | ||
| SMART | 237 | 276 | 40 | 0.45 | ||
| SUPERFAMILY | 244 | 543 | 300 | 1.1E-44 | ||
| Pfam | 248 | 275 | 28 | 0.21 | ||
| SMART | 368 | 405 | 38 | 1.9E-5 | ||
| Pfam | 370 | 405 | 36 | 0.0014 | ||
| ProSiteProfiles | 374 | 414 | 41 | 9.038 | ||
| ProSiteProfiles | 374 | 414 | 41 | 8.993 | ||
| SMART | 408 | 448 | 41 | 6.6 | ||
| Pfam | 421 | 448 | 28 | 0.21 | ||
| SMART | 456 | 497 | 42 | 180.0 | ||
| SMART | 500 | 542 | 43 | 2.7 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi1g1v0785400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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