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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0785800 |
| Transcript ID | LotjaGi1g1v0785800.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Peptidyl-prolyl cis-trans isomerase; TAIR: AT3G56070.1 rotamase cyclophilin 2; Swiss-Prot: sp|Q38867|CP19C_ARATH Peptidyl-prolyl cis-trans isomerase CYP19-3; TrEMBL-Plants: tr|I3SVV5|I3SVV5_LOTJA Peptidyl-prolyl cis-trans isomerase; Found in the gene: LotjaGi1g1v0785800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:135820441..135822367) extracted from Lotus japonicus Gifu genome v1.2.
CCCCATTTTATTTATAAAAAATTGCTCGATATTGAAAAAAAAACAGATGTCTGATAATTGGGCCGAGGGTGGTGGAATGC AGTGCAATAAGAAAGCCCAACCCACAAAATGCAAAACCCTAAACCCTGCCTCCCCTATATCTATGCCATTTCTGCGCCTC TTCCATTGTGTTCTTCAACCTCAGTTTCACTCCAAGGTACTCTCACTCTTCCTCTTCTTCTCCGATTCTCATTCTTGCTT TCGTTTCCCTCTGCGCATTTCGAAGACTCTCAGTTGCTTTTTTACCATAGCCTGTGAGTTCAAAGCATGTGCAAAATTGT ACTTCATCTTCTCTTTTATTAGATCCTCTTTGTTGTTAATATCTTGAGGATTTTCTGCAGAACGATGAACATTCCCTAAT TTACTGCTGTTGTTGTTTTTATAATTTTACGAATCTATGTAATTTTTGTGTTTGATGTTTTGATTTAACACGCTGTGCTT ATGGACGGTCTTGTGCTGATTCGTTACTACATCAGTGCATAACATAAACCTAAGCTAGATCTAATGTTGCCACCTTGTAT ATGTTTTTTGTGTGTTCCAATTGGATCAACGCTTTTACATGGTGGCAAATATTTTTTAATTCATTCTTGTATTTTTAGCA GAAGATCTTGTGTTTTGTATTTGAGAATGTTTGGTCCTGCAATGGGTAATTTTCAGAATTAATTTTGATAAGTTGTTTGA GATTTGATTTTGGATAATTGATTTCTGCTGCTAGGAGTTTGAGAGCATAGCTTCTTAGTTGAACATAATCAATATTTACA ACTTGATTTCACACCATTATCCTGTAAAAATCAATTTCAACTCTAATTAAATTATGGGTGCCTTGTAATTAACTGTGTTA TATTTTGGAATGTTATCTGTGTAGGAACAGGGAAATTTTGTTGTTGTCAAGATGACAAATCCAAAAGTTTTCTTTGATAT TGCGATTGGAAAGACTAAGGCTGGGCGAATTTTAATGGAACTTTTTGCTGATGTTACCCCAAAAACAGCTGAAAACTTCA GGGCTCTGTGTACTGGGGAAAAGGGGATTGGTAAATCTGGGAAAGGTTTACACTTCAAAGGATCTGCATTTCATCGGATT ATTCCAGAGTTCATGTGTCAAGGTGGTGATTTTACGAGAGGGAATGGGACTGGAGGGGAGTCAATTTACGGGGCCAAGTT TGCTGATGAGAATTTCAAGCTGAAGCACACTGGACCTGGTATTCTTTCCATGGCAAATGCTGGACCCAATACAAATGGTT CTCAGTTCTTCATATGCACTGCAAAGACTCCATGGCTTGATGGAAAACATGTTGTGTTTGGAAAAGTTGTTGATGGATAC AATGTAGTGAAGGAGATGGAGAAGGTGGGTTCCGGTGGTGGGAGTACGTCAGAAAAAGTGGTAATTGAAGATTGTGGGCA GATAGTAGAGAACTGAAAATTATTGCTATTGAAGCAATGATTTTCAATGTAATTACTAGTACTTTATAAAATAAATTGTA GTAAGTTATTTGATTTTGTAAAAGACCATTTTTTTACCCTAATCTAACTTTTAAAAGCACTTTGTTTATTTCTTTGTTTG TATTGGTTTTGATTTCTCTTTGTGTACTGATAATTGCCATACTAAACTTAAAAAAAAAACTGTTCGAAAATCCTTTTTTA ATTTTCCTGAGATAGAATTGATAACAAGATGCATTTGTTCTCCAAATCTTCCTTGCATGCCCAAGAAAGTTACCTGCTAC AAATGTTCTTGAAATCTTGAGAGTGAGGTTAATCAATAACAAAGCAGGGTAAAAAGTCTAAACATTTGGCAATGTTCACA TTTCTTGAATGAAACCATAACATAAACTAAACATACCGCCAGCCTTAGTGAAAAGGGTTTAATATACTAAGTACTAACCC CTATGTA
CDS sequence (LotjaGi1g1v0785800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCTGATAATTGGGCCGAGGGTGGTGGAATGCAGTGCAATAAGAAAGCCCAACCCACAAAATGCAAAACCCTAAACCC TGCCTCCCCTATATCTATGCCATTTCTGCGCCTCTTCCATTGTGTTCTTCAACCTCAGTTTCACTCCAAGGAACAGGGAA ATTTTGTTGTTGTCAAGATGACAAATCCAAAAGTTTTCTTTGATATTGCGATTGGAAAGACTAAGGCTGGGCGAATTTTA ATGGAACTTTTTGCTGATGTTACCCCAAAAACAGCTGAAAACTTCAGGGCTCTGTGTACTGGGGAAAAGGGGATTGGTAA ATCTGGGAAAGGTTTACACTTCAAAGGATCTGCATTTCATCGGATTATTCCAGAGTTCATGTGTCAAGGTGGTGATTTTA CGAGAGGGAATGGGACTGGAGGGGAGTCAATTTACGGGGCCAAGTTTGCTGATGAGAATTTCAAGCTGAAGCACACTGGA CCTGGTATTCTTTCCATGGCAAATGCTGGACCCAATACAAATGGTTCTCAGTTCTTCATATGCACTGCAAAGACTCCATG GCTTGATGGAAAACATGTTGTGTTTGGAAAAGTTGTTGATGGATACAATGTAGTGAAGGAGATGGAGAAGGTGGGTTCCG GTGGTGGGAGTACGTCAGAAAAAGTGGTAATTGAAGATTGTGGGCAGATAGTAGAGAACTGA
Protein sequence (LotjaGi1g1v0785800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSDNWAEGGGMQCNKKAQPTKCKTLNPASPISMPFLRLFHCVLQPQFHSKEQGNFVVVKMTNPKVFFDIAIGKTKAGRIL MELFADVTPKTAENFRALCTGEKGIGKSGKGLHFKGSAFHRIIPEFMCQGGDFTRGNGTGGESIYGAKFADENFKLKHTG PGILSMANAGPNTNGSQFFICTAKTPWLDGKHVVFGKVVDGYNVVKEMEKVGSGGGSTSEKVVIEDCGQIVEN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 46 | 231 | 186 | 2.4E-98 | – | |
| PANTHER | 46 | 231 | 186 | 2.4E-98 | – | |
| Gene3D | 55 | 231 | 177 | 5.8E-88 | ||
| SUPERFAMILY | 57 | 230 | 174 | 2.19E-78 | ||
| CDD | 63 | 228 | 166 | 1.33813E-118 | – | |
| ProSiteProfiles | 66 | 229 | 164 | 45.197 | ||
| Pfam | 71 | 228 | 158 | 1.3E-47 | ||
| PRINTS | 83 | 98 | 16 | 8.4E-42 | ||
| ProSitePatterns | 114 | 131 | 18 | - | ||
| PRINTS | 119 | 131 | 13 | 8.4E-42 | ||
| PRINTS | 162 | 177 | 16 | 8.4E-42 | ||
| PRINTS | 177 | 189 | 13 | 8.4E-42 | ||
| PRINTS | 190 | 205 | 16 | 8.4E-42 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Protein peptidyl-prolyl isomerization | The modification of a protein by cis-trans isomerization of a proline residue. | ||
| Molecular function | Peptidyl-prolyl cis-trans isomerase activity | Catalysis of the reaction: peptidyl-proline (omega=180) = peptidyl-proline (omega=0). | ||
| Biological process | Protein folding | The process of assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure. |
Expression pattern of LotjaGi1g1v0785800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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