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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0785900 |
| Transcript ID | LotjaGi1g1v0785900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | F-box protein interaction domain protein; TAIR: AT3G23880.1 F-box and associated interaction domains-containing protein; Swiss-Prot: sp|Q9LIR8|FBK67_ARATH F-box/kelch-repeat protein At3g23880; TrEMBL-Plants: tr|A0A1J7H7J9|A0A1J7H7J9_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0785900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:135838703..135840470) extracted from Lotus japonicus Gifu genome v1.2.
AAAACCACCACCCAACATGATGCAGCAACTCCTCCCACTCTCTGTTGCAGATACAGAGCCGCCACCACCAATTCTTATCG ACGAACTCATCTGGGAAATCTTGTCGTTGCTTCCGGTGAAGTCCCTTGTGCGGTTCAGGTGCGTGTGCAAGTCATGGAAG CTCACCATCTCCAATCCGCAATTCATGAAACTGCACCTTCGTCGATCTTCAGCTAAAGCCGCAGCAGACTTCGCAGACAG CCAAGTAGTGGTCATGACCAAAAGAGACCATATCGCACACAGTCCATTACTATCCAAGTTCCACATTGTCCATGATGAAA CCTTCACCGCCGACGAACCCTGGCCGGTCCACGCCCTACGCGAACCCTTCAATCAACCACATGTCTCAATCTGCTATGCT CCTTCGCTATTTTCATCCCAAAACAATGACAAACTAAAGGGCCATTGTCGTTTGATTGGAGCCTGCAACGGCTTGGTTTC TGTGATCAATGAAGGATACAACTCTGCAGAGTCTGCAACGAAATTATCATGTTGTAACTTGAACCCAGCTACCAAGTTAC GATCTCAAGTGTCACCAACTTTGTCTTTGTGTTACAAACAGTTTCACTCTTTGATCCATAGTGTTTTTCGTATTTTTGGG TTTGGATATGATCCTTTGAATGACACCTATAAAGTGGTGGTGGTTTTTTACCACAGGAATCATCTTGAACACTGCATGCA AAGCGTGGCAAATGTTTACAACATGGGTGATGGTTGTTGGAGAAGAATTCAATCTTTCCCGGATTTTACACGTGAACATT GGGGGCGCGGAACAGCACCGGATCAAAATGGAGTTTACTTGAATGGAACAATAAATTGGGTGTTAAGATTAAACATCGCG TACGACATTATTTCACTTGATTTGGGGAGCGAAGTGTGTTCACGATTGTCACTGCCTTGTTTTCCTCCACCTGGCCCTAA ATGCGTTTACGATCTTCCGCCAATTCTGGGGGTTCTTAAGGATTCCTTGTGTGTTTTGCACAATAATAACGATAAGACGT TTGTGATTTGGAAAATGAACGAGTTTGGAGCTCATGAGTCTTGGACTCCGCTATTCAACTTTGATTTCAAAAAGGAAGAT CTATATCGTTTTGATAAGTTCTTTTTTTCTGAAAATGATGAAGTATTATTGATGACACTCACCAAACAAGTTCTATATAA CCACAGTGATATCACATTCAAATTTAATGATAGAGTTCATAACTATATTCACGATTGGAATAATATCGAGAATTATGTTG AAAGTTTGGTTTCACCTTCTTGAAATTGAATTTAGCAATTGGGATCATTGAGTCGTTCATCAAGGAGAAGGCCAAAAGAC ATGTGAACAAACTTGTTTGGATCGAGGATCATGTTTGAGTGGATTAGTCTATATTGGGCCAGCCCACATATTATTAAGTA CCTATATGTTCTTTTCACTAAGAGTTTCTAGATAGTTCCATTGTAAGATATTGGGCCTCCATGAGAGCTCTTTCTCTGTA AGACCCAGGATTTTAGAATTAAATAAATAATTAATTTCCAACTCACGCATATGATTTTGTGTAAGCGTGAGGGAAACTTG ACTTGTGTTTGATGTTTGGATTAGTATTATGAAGAAGAAAGTTCAGGAAATGACCAATAATAGTACTATAGTCGCTATAG GTTCTAGCACGAGCTTTATTCACTTCCGCCTTAGGGCGAAAGCGTTAGTAAATGGCTAATCTGCTCTTAAAGCACTATAG AAACGAAA
CDS sequence (LotjaGi1g1v0785900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATGCAGCAACTCCTCCCACTCTCTGTTGCAGATACAGAGCCGCCACCACCAATTCTTATCGACGAACTCATCTGGGA AATCTTGTCGTTGCTTCCGGTGAAGTCCCTTGTGCGGTTCAGGTGCGTGTGCAAGTCATGGAAGCTCACCATCTCCAATC CGCAATTCATGAAACTGCACCTTCGTCGATCTTCAGCTAAAGCCGCAGCAGACTTCGCAGACAGCCAAGTAGTGGTCATG ACCAAAAGAGACCATATCGCACACAGTCCATTACTATCCAAGTTCCACATTGTCCATGATGAAACCTTCACCGCCGACGA ACCCTGGCCGGTCCACGCCCTACGCGAACCCTTCAATCAACCACATGTCTCAATCTGCTATGCTCCTTCGCTATTTTCAT CCCAAAACAATGACAAACTAAAGGGCCATTGTCGTTTGATTGGAGCCTGCAACGGCTTGGTTTCTGTGATCAATGAAGGA TACAACTCTGCAGAGTCTGCAACGAAATTATCATGTTGTAACTTGAACCCAGCTACCAAGTTACGATCTCAAGTGTCACC AACTTTGTCTTTGTGTTACAAACAGTTTCACTCTTTGATCCATAGTGTTTTTCGTATTTTTGGGTTTGGATATGATCCTT TGAATGACACCTATAAAGTGGTGGTGGTTTTTTACCACAGGAATCATCTTGAACACTGCATGCAAAGCGTGGCAAATGTT TACAACATGGGTGATGGTTGTTGGAGAAGAATTCAATCTTTCCCGGATTTTACACGTGAACATTGGGGGCGCGGAACAGC ACCGGATCAAAATGGAGTTTACTTGAATGGAACAATAAATTGGGTGTTAAGATTAAACATCGCGTACGACATTATTTCAC TTGATTTGGGGAGCGAAGTGTGTTCACGATTGTCACTGCCTTGTTTTCCTCCACCTGGCCCTAAATGCGTTTACGATCTT CCGCCAATTCTGGGGGTTCTTAAGGATTCCTTGTGTGTTTTGCACAATAATAACGATAAGACGTTTGTGATTTGGAAAAT GAACGAGTTTGGAGCTCATGAGTCTTGGACTCCGCTATTCAACTTTGATTTCAAAAAGGAAGATCTATATCGTTTTGATA AGTTCTTTTTTTCTGAAAATGATGAAGTATTATTGATGACACTCACCAAACAAGTTCTATATAACCACAGTGATATCACA TTCAAATTTAATGATAGAGTTCATAACTATATTCACGATTGGAATAATATCGAGAATTATGTTGAAAGTTTGGTTTCACC TTCTTGA
Protein sequence (LotjaGi1g1v0785900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MMQQLLPLSVADTEPPPPILIDELIWEILSLLPVKSLVRFRCVCKSWKLTISNPQFMKLHLRRSSAKAAADFADSQVVVM TKRDHIAHSPLLSKFHIVHDETFTADEPWPVHALREPFNQPHVSICYAPSLFSSQNNDKLKGHCRLIGACNGLVSVINEG YNSAESATKLSCCNLNPATKLRSQVSPTLSLCYKQFHSLIHSVFRIFGFGYDPLNDTYKVVVVFYHRNHLEHCMQSVANV YNMGDGCWRRIQSFPDFTREHWGRGTAPDQNGVYLNGTINWVLRLNIAYDIISLDLGSEVCSRLSLPCFPPPGPKCVYDL PPILGVLKDSLCVLHNNNDKTFVIWKMNEFGAHESWTPLFNFDFKKEDLYRFDKFFFSENDEVLLMTLTKQVLYNHSDIT FKFNDRVHNYIHDWNNIENYVESLVSPS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 17 | 108 | 92 | 1.6E-8 | – | |
| Pfam | 20 | 56 | 37 | 1.7E-7 | ||
| SMART | 20 | 60 | 41 | 8.0E-5 | ||
| SUPERFAMILY | 21 | 66 | 46 | 3.27E-13 | ||
| PANTHER | 25 | 397 | 373 | 5.3E-41 | – | |
| PANTHER | 25 | 397 | 373 | 5.3E-41 | – | |
| TIGRFAM | 150 | 389 | 240 | 1.4E-21 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi1g1v0785900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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