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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0786200 |
| Transcript ID | LotjaGi1g1v0786200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Leucine-rich repeat receptor-like protein kinase family protein; TAIR: AT2G33020.1 receptor like protein 24; Swiss-Prot: sp|Q9C9H7|RLP12_ARATH Receptor-like protein 12; TrEMBL-Plants: tr|B0BLA6|B0BLA6_LOTJA CM0545.400.nc protein; Found in the gene: LotjaGi1g1v0786200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:135861478..135862492) extracted from Lotus japonicus Gifu genome v1.2.
ACAAAACTCGAAGTTTTGGACCTTGGAGACAACAACATAGAAGATTCATTTCCTAGACGACTAGAAACTCTGCAAGAGTT ACAAGTACTCCGTTTACAGTCAAACAAACTTCGTGGTATCATCACTTGTTCCAACACCAAACATCCATTTCCCAAGTTGA GAATTCTTGATGTCGCCAATAACAATTTTAGTGGCTCCTTGCCAGCATCATGCTTCATGAACTTTCAAGGAATGATGAAT GTGAGTAATTATCCAAACCGCTCCCTATACATGGACGACAAAAGTTACTACAAAGATTCAGTGGTGGTCATAATGAAAGG TCAAGAAATGGAGCTCAAGAGGATATTAACTGCTTTCACAACTATTGATTTGTCAAACAACATGTTTGAAGGTGGCATTC CAAAAGTCATTGGTCAATTAAAGTCTCTTATAGGACTTAATCTTTCAAACAATGGAATCAATGGTGTCATTCCACATTCA TTGAGTAATTTGACAAATTTGGAATGGTTGGACCTCTCATGGAACCGGTTGACATGTGACATTCCTTTGGCTTTGACAAA TTTAAATTTTCTTTCTACCTTGAACCTTTCACAAAACCATCTTGAGGGAATCATACCTACTGGTGGACAATTTTACACAT TTGGAAATGCTTCTTATGGAGGAAATCCAATGCTATGTGGACTCCCTTTGTCAAAATCATGCAATAAGGATGAAGAACAT CCACCACATTCAACATTTCAAGATGATGAAGAATCAGGATTTGGTTGGAAATCTGTGGCTGTGGGATATGCGTGTGGGGC TGTGTCTGGGATGCTCTTGGGATATAATTTATTTTTGACTGCAAAACCTCATTGGCTTGCGACACTTGTTGAAGGTCTGC TTGGTATAAGCGTGAAAGGGACAAACAACAGAGCCCGTACAAACCGCAGATGAATGAATTAGTTCAATATGGGTCTGTTT GGTACATAAATGCAGTTGTTTGTAACTTCTGTGTGAGAAATGAATTCTTATATCT
CDS sequence (LotjaGi1g1v0786200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAACTTTCAAGGAATGATGAATGTGAGTAATTATCCAAACCGCTCCCTATACATGGACGACAAAAGTTACTACAAAGA TTCAGTGGTGGTCATAATGAAAGGTCAAGAAATGGAGCTCAAGAGGATATTAACTGCTTTCACAACTATTGATTTGTCAA ACAACATGTTTGAAGGTGGCATTCCAAAAGTCATTGGTCAATTAAAGTCTCTTATAGGACTTAATCTTTCAAACAATGGA ATCAATGGTGTCATTCCACATTCATTGAGTAATTTGACAAATTTGGAATGGTTGGACCTCTCATGGAACCGGTTGACATG TGACATTCCTTTGGCTTTGACAAATTTAAATTTTCTTTCTACCTTGAACCTTTCACAAAACCATCTTGAGGGAATCATAC CTACTGGTGGACAATTTTACACATTTGGAAATGCTTCTTATGGAGGAAATCCAATGCTATGTGGACTCCCTTTGTCAAAA TCATGCAATAAGGATGAAGAACATCCACCACATTCAACATTTCAAGATGATGAAGAATCAGGATTTGGTTGGAAATCTGT GGCTGTGGGATATGCGTGTGGGGCTGTGTCTGGGATGCTCTTGGGATATAATTTATTTTTGACTGCAAAACCTCATTGGC TTGCGACACTTGTTGAAGGTCTGCTTGGTATAAGCGTGAAAGGGACAAACAACAGAGCCCGTACAAACCGCAGATGA
Protein sequence (LotjaGi1g1v0786200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MNFQGMMNVSNYPNRSLYMDDKSYYKDSVVVIMKGQEMELKRILTAFTTIDLSNNMFEGGIPKVIGQLKSLIGLNLSNNG INGVIPHSLSNLTNLEWLDLSWNRLTCDIPLALTNLNFLSTLNLSQNHLEGIIPTGGQFYTFGNASYGGNPMLCGLPLSK SCNKDEEHPPHSTFQDDEESGFGWKSVAVGYACGAVSGMLLGYNLFLTAKPHWLATLVEGLLGISVKGTNNRARTNRR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 2 | 170 | 169 | 3.2E-48 | ||
| PANTHER | 32 | 162 | 131 | 1.4E-46 | – | |
| PANTHER | 32 | 162 | 131 | 1.4E-46 | – | |
| SUPERFAMILY | 44 | 159 | 116 | 4.76E-27 | – | |
| Pfam | 48 | 105 | 58 | 2.5E-11 | ||
| ProSiteProfiles | 70 | 93 | 24 | 5.895 | ||
| ProSiteProfiles | 94 | 117 | 24 | 7.227 | ||
| ProSiteProfiles | 118 | 139 | 22 | 5.879 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi1g1v0786200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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