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LotjaGi1g1v0786600.1

Overview

Field Value
Gene ID LotjaGi1g1v0786600
Transcript ID LotjaGi1g1v0786600.1
Lotus japonicus genome version Gifu v1.2
Description Single-stranded DNA-binding protein WHY3; TAIR: AT1G71260.1 WHIRLY 2; Swiss-Prot: sp|Q8VYF7|WHY2_ARATH Single-stranded DNA-binding protein WHY2, mitochondrial; TrEMBL-Plants: tr|I3SAE2|I3SAE2_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0786600
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:135890142..135894021) extracted from Lotus japonicus Gifu genome v1.2.

TCCATTTCAATTCAAACACAGTCAAAACCATAAACCCCTTTCTCCTTTTCTACTTCTTCTTCCCTTTCTCTCTCTCTCAC TCTCTCGTCTGAGACACCAAATTCCGAAAATGTTGAAGCTTTTGCGCGTTCTTCCTTCCACTTCCAGGTAACACACCATG TTTGCTTCCACTCTCAAATGCTCTACAATCGCTTACTGTTACAAACCTACAATTTTTACTTTCTCTCGCTAAATTTCTGC ACGCAAATTCCTTTTTGTGAAACAGGAATTGGGTATTGGAAATGGAAGTGTTATCATCATCTAGGAACCCTCAAGTTAGA GACTTTTCTACTGCTGCTAGAGAAACCTATGTTGCTAAAGGCATTTATTCACTTTAATTCCTTACAAAAATAGTGATAAT TTTGTTGATTGTTTTGCTCAACTATGATTATATGATGTGAACAACAACACTTGCAGGATACACTACGGATCGCGTATTTG CTCCTTATTATGTTTACAAGGGCAAAGCTGCTATGTCATTGTCTCCTGTTCTTCCAACTTTTACTAAGTTGGATGTAAGC TAAGCTCCCCCTTTTCCTTTTTTTGTAAATACAACTCTTTTGCTTAATGTTTTAGTGATTTATCAATTCAATTTGTCATG CATAATAGTCTGGGGCTCTTGTGGTTGAGCGTCGCGGTTCCATAATGATGGTTTTCACGCCTGCTATCGGGGAGCGCAAA TATGACTGGGAGAAGAGACAGGTAATTTTCTTTTTATGCTTTTCTCACATTATATTTCTCTTTGAATTCTGTTTATACTT TCTTTCTGTGGCTTAAGCACACCTTTTGCATGGTTAGGAAGTATCTAGGTTGTGGCATATTTCCAAGCATTTCTTATTTT GAAGTAGAAAACGGCATATGATCGAGCATTTCTTTAACAGTTATGGCAGTAGCACCTATCACATAAGCGCCTATCTATAA GCTTATTTAAGAAGATGCTTATCGAAATAAGCCCAACATAACTTATAAGTAGGTAGAAGAAGTGCTTAATCATAAGCTAA TATGAAAAACTTATGAAAATAAATAAGCTCTTTTAAGCTATAGGTAGGTCACAAGTTCAACCAAACAATTTGCTTAAGTG CTAATGCTATAAGATATGCGTAAATAAGATCTTTCATACCCTATCTCAATATATTGTCTATAATGTTCTATACTTCTATC TAATACTTGTAAGAGAAACAGACAGAGAATCTTTTTGATGTTCCATTATCTCTCTTAATTGCCTTTTTGTAGAAATTTGC TCTCTCAGCAACTGAAGTTGGTTCTTTGATAGCCATGGGTCCCCAAGATTCTTGTGAATTCTTCCATGACCCCTCAATGT CATCAAGGTTGGTTTCATGACTCTTTGGATTAGTTTTTATGGCCGATTATTTATCTTATGAAACAACACCGGTGGGATTG AATTGTAAAGACAAGCACTATTATTAACCTATTAATGAGATGACTTAGTAAGCACCTTATGCTGCAGTAATGCTGGTCAA GTAAGGAAGAGTTTATCAATTAAGCCTCATGCAAACAGTAGCGGTTACTTTGTGTCTTTGAGTAAGATTTTGTGTTGTTA GTTTTTCTCCTTTTATTTACTCCATGTTTCAGTGTTCTCTTTATTCTATCTGATTGTGCCACCTTCTTTGGCAGCTGTTG TCAATAACCTGTTAAATGCCAAAGAAAACTTCAACGTGCCTGTCACTACTGCTGAGTTTGCTGTGATGAAGACGGCTTGC AGTGTATGTCTTTTTCTGCTTAGCTTCTCATAAATAACTTTTAATTTGGTCAATTTCCTCTATGTCTTTCACTAGTTATG GGCTGCTTAGTTTCTTCTTTCAAAATGTACGAAATAAGAATGAAGAAATCTAATATCTTTTTGAATCTCTGATTCAAAAT TTCTGGAGCATTAAGTTTAGCAGCTTTCTGATCCAGAATTCAGAATTGCACAGTGCCTTGTAGAATATTTTTATTAACAT TCTTGAACTGGTATTGCACATTTGAATATTTGATGATGTTGGCAGACCACTGTTTTGTTTTCAGGTGATGATTGAAACAT AGTTCATTGATTATTATGTTGTTTAATGTGAAAAGATTCTCATACTTACAAGTTTCAATGTTGAACTCGTGCATAATTTA TTGGAGATAGGTAGAATTCAAAATTAACTTTGAAAACTGCACTCATTATAAGTCCAACAACAGTTAAAATGATTGAACTG TTGTTAGAGGGCAGGGGGGGGGGGTGGATGAGTCAAGAGAGACAGATTCTTTTATATGAGAGTGGGATGGACAAATCTTG ACCATATAACTATATATGGGTAGTCGAAGTTACAAGTTATTTATTGGTCACATGACCCTTAAAAAGTTATGACTTCATGT TGAAAATTTATGATAAGATCTGACGGTCAAGGTTTACTTGTCTCACTCTCATATAAAAGAGACTAATCTCCAAGGGTAGG ATCGGGTTCCATAACAGAGACCCCTCCCAACAATGTTTTTCCATACACACAAATTCAATGATCAAACCCTAGACCACATG CTTAAAGAGTCTCTTTCCCTTGGACTGGACCACCACATGTGGCAGTAGCCCTCTCACTTGACATGTTGTAAAAGATAAAA TACCAATAGTAAGAGGCTAGCTGATAATCATCCTATGAATATCGCATGGAGTCAAGCAAAGAGAGGATAACCATTATGCT GCCTAATGCTTCATAGTCCTTCTTTGGACAGTGGGTGAAACATCCAGATGTACAACATATATAAAAGTTAAGAGAGGGCA AGTCAATTCATGTCTTGCTTATAAGCTTCATATGTGGGGGCCCTGCAAATGGCTGGAAATATTACTTTGATTAAAGTAAT TGCTTTATAAAAGGCTCAAACTGGTTCACCCCTGGTTTGGCACTGATTTGGACTGTTATCTTCTGGTTGCTTGCTTACCC AGTTTTGTGAGCTGCTGACCACCTGTCTAGTTGTCTGGTTTTACAATCAAACTAGCCAGTCCATTTTTTCCTTTTTGATT CTATGCTCAAAATAGCTGTTAAGTTTTAATGTGTGGGAAGCTTGAACCATTCATGTAAAGTTTCTTTATTTGTTGGTTTA GAATCCAGTTCCTAGCACTGCTGGTTTTTATAAGTTGCTTTCGATACAACCATGCATAGCCAAATCTTCTGTTTTTGTTT TGCATGCTTTTAGTATATTTTTGCTCCTTGTTAAGAGTTTTGGCATTTGTCAATTTGCTTTTTGATGCAGTTTGCATTGC CACACATCATGGGCTGGGACCGTTTAACTAATCAGCAGTCCAGTCTGCCCGGAGGGACAGTTGGCCTTCAGTCGAAGGTG GACAAACCAGTTTTCGACTTGGAATGGGATAAGTGAATTAACATTAAGAAATATGAAATGAATCCTTGTTTATGCTACAA TGCCATTTTGTATATTATCAATTCAAAGGCTAGGACTGCTTGGGGGAAGTTAACGTGTAGTACTTAAAGAGATATAAGAA GGATGATGGATTGATCAGATGTCAGCGTCATTTCGCAATTAGTCATGTTATTAGTAATGTATTATGGCTGGTCTTCTGTT AGTTTTCTTTACTATGAACTGTTGAACATTGTCAGTCTTATTCATGGTAACATATGAAGAATATCAGTTTATGTGCTGGT AAGTAAATTCTAGGGTGCAGTTTAACGGTTGTTAGTAACTATCATGTCTTTCTACATCAATGATACTTTCTGTTACTGTG AAAAAACAATTTATGGCATGTGAATTTGCTTCGGTTGCAACCAAATGAACTTCTATTTTGAAGGAATTTGAAGTTGTTAC CACTCAACTTTGTTTGGTTTATAAGCGGAGAAAGGGATGT
Download Genomic Sequence

CDS sequence (LotjaGi1g1v0786600.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGTTGAAGCTTTTGCGCGTTCTTCCTTCCACTTCCAGGAATTGGGTATTGGAAATGGAAGTGTTATCATCATCTAGGAA CCCTCAAGTTAGAGACTTTTCTACTGCTGCTAGAGAAACCTATGTTGCTAAAGGATACACTACGGATCGCGTATTTGCTC CTTATTATGTTTACAAGGGCAAAGCTGCTATGTCATTGTCTCCTGTTCTTCCAACTTTTACTAAGTTGGATTCTGGGGCT CTTGTGGTTGAGCGTCGCGGTTCCATAATGATGGTTTTCACGCCTGCTATCGGGGAGCGCAAATATGACTGGGAGAAGAG ACAGAAATTTGCTCTCTCAGCAACTGAAGTTGGTTCTTTGATAGCCATGGGTCCCCAAGATTCTTGTGAATTCTTCCATG ACCCCTCAATGTCATCAAGTAATGCTGGTCAAGTAAGGAAGAGTTTATCAATTAAGCCTCATGCAAACAGTAGCGGTTAC TTTGTGTCTTTGACTGTTGTCAATAACCTGTTAAATGCCAAAGAAAACTTCAACGTGCCTGTCACTACTGCTGAGTTTGC TGTGATGAAGACGGCTTGCAGTTTTGCATTGCCACACATCATGGGCTGGGACCGTTTAACTAATCAGCAGTCCAGTCTGC CCGGAGGGACAGTTGGCCTTCAGTCGAAGGTGGACAAACCAGTTTTCGACTTGGAATGGGATAAGTGA
Download CDS Sequence

Protein sequence (LotjaGi1g1v0786600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MLKLLRVLPSTSRNWVLEMEVLSSSRNPQVRDFSTAARETYVAKGYTTDRVFAPYYVYKGKAAMSLSPVLPTFTKLDSGA LVVERRGSIMMVFTPAIGERKYDWEKRQKFALSATEVGSLIAMGPQDSCEFFHDPSMSSSNAGQVRKSLSIKPHANSSGY FVSLTVVNNLLNAKENFNVPVTTAEFAVMKTACSFALPHIMGWDRLTNQQSSLPGGTVGLQSKVDKPVFDLEWDK
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR31745:SF1
22 235 214 1.2E-94 –
PANTHER
PTHR31745
22 235 214 1.2E-94
IPR013742
Gene3D
G3DSA:2.30.31.10
44 215 172 4.2E-73
IPR009044
SUPERFAMILY
SSF54447
49 233 185 4.16E-65
IPR009044
Pfam
PF08536
57 191 135 1.0E-58
IPR013742

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of
GO:0003697
Molecular function Single-stranded DNA binding Interacting selectively and non-covalently with single-stranded DNA.
Subterm of
GO:0006355
Biological process Regulation of transcription, DNA-templated Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
Subterm of
Regulates
GO:0006952
Biological process Defense response Reactions, triggered in response to the presence of a foreign body or the occurrence of an injury, which result in restriction of damage to the organism attacked or prevention/recovery from the infection caused by the attack.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0786600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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