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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0789900 |
| Transcript ID | LotjaGi1g1v0789900.2 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | CMP-sialic acid transporter, putative; TAIR: AT5G41760.1 Nucleotide-sugar transporter family protein; Swiss-Prot: sp|Q8LGE9|CSTR1_ARATH CMP-sialic acid transporter 1; TrEMBL-Plants: tr|A0A1J7HWB5|A0A1J7HWB5_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0789900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:136193390..136196553) extracted from Lotus japonicus Gifu genome v1.2.
CTTGCTCATCATCATCATCTTCATTTCTTTCTCATCAATTTCACGTTGCAGGGAATCCTAACTACCCTCTCTCAAACTAA TGGAAAGTATGACTACGATTATGCCACTATCCCATTTCTCGCTGAGGTTTTCAAGGTTCATATCTGCATCCATCCAAGTT TCGATTTTGAACCAGAACTCGTTGGTGGGTCTCTCTCATCATTCATTCATATCTTGTTTGTCTGCTATTCTCAGCTTGCA GTGTCTTGTTTGTTACTGTGGAGGGAATGCAAAAGCTCACCTCTTCCGAAGATGACAACGGACTGGAAAACGGTGGCTTT GTACCCCATTCCTTCTGTTATATACCTGATCCACAACAATGTTCAGTTTGCTACACTCATGTATGTGGACACTTCAACAT ATCAGATAATGGGGAACTTGAAGATTGTTACTACTGGAATACTATTCAGGTGCATTGTTGTGTTTTCAGAATTCAGATCA ACTGATCAATGTTCAGGTCAAGGTGTATTTGTTTAGTACTATGTTTTGTTTCTCATTTGGAGCTCATGTTATTTCTAGGC TGTTCTTGGGGAGGAGGCTTTCGAACTTGCAGTGGATGGCGGTTGGGCTGTTGGCTATTGGGACAACCACAAGTCAGGTG CCAATTTGCAACTCTAGTTCTCTGGCTTTAGATTGATTTTATAACAAGATTTCTGAACTTTATGCATTATTTGCTATGTA TTATGAACTAAAGAACTCAGCATTGAGGACTTAGGTGAACTTTTTATCGTTCTAACACTTGTATGAGTAACTGTAACATG AGTTTAAGTGCCTATAGACACAAATGACCGAAAGCTTAAGATACATGGACATAGTAACAGTAATAGAAGATAATGAAGTC TGTGTTAAAGTTTTATTATCTTGAGCTTTTGCTCAGTTCTGCCCATCTACAGATACTATGCTCACGGTAGAGTTTCTCAG TTTCTACACACTTGTATAGTTCTAATACAATAGGTCCTAATGTATCGCATAACTCTCGAACTTTATGAAGTCATTTCCAT ACAGTAAAATGATTCCATCATAATTTGACTTCTATTGTTTTTTATGGAAGATGCCTTATTTGCACTCATTCAGCCAGCTG CTGACACTTGTATGGGGGTCTCAGAAGGGTTCTATGAATACTATAGATGGTTTATGTGTATGCTTATAAAGAGGACTTGA CTGTACCTTCCTTTGGTCATTAGAGGAAGCACCCTTTCGGGGGAGTATATGAAATCCTCCTGAAAAACAAAAATAAAACA GAGGGCCAGTGGCTTCCAAATGCTACAAAGCTGTCCCAGTGTCCAGTTTCTTTGCATGTTATTAGAAGAAATGCAAAGAA GTTGCATGTTAAATTATATAAATTTGAAGTCCAAATACATCATGTTAAAGACTAAATGCCCTAAATTGGCACATTAAATT AATTAAGCTTTTTGCTTTGACTTAATTAGTTCCAAATCATTCTCCTTTCTCATTATATACAAAAAAAAAATTGTCATTAA GATGGAATCTCTATGCTCGTTCATTTTAGGTTAGGGGCTGTGGAGTGGCTTCATGTGACTCCCTTTTCTCAGCACCAATT CAGGGTTACATGTTAGGAGTTCTATCTGCTTGTCTCTCAGCATTAGCTGGAATTTATACAGAGTTCTTAATGAAGAAAAA CAGCGACACCTTGTACTGGCAGAATATACAGCTTTACACGTAGGTATTCTTTCTTGAATTTGTCATCTCAAACATCAACA TAGGCACAGGCACACATCTCTCTTTTTTATTATCTTTTGAATTGGAGCCTTCAAATTTGTTTAGTCCGGAGTAAGGAGTA TGGCATATATTACTGTTAAATTTGTATAGTCCGTTCACTGTAGGTTTCTAATTTCTGAACTCTTTCAACTTTGACATTGT CTGTGTTTTTGTGTTTGATATTATGTGTTGTGCTTTATTTTGGTAGCTGTATGTAATGCTTAATACATTTGGATTTGCAT TATTGCTGGAATATCTGGTAGTATAAGCATGGAATACCTGTTTTTTCAGCTAATCTTTAGAAGTTAAATATTTAAATTAT AAGGAATTTATCTCTGTAATGTCTTTTCTTTGAAATTTGCTAGTGATTTTTTTTTTACTTTCCCAATTCTCAAGTTGATG TTTCTGTAAAATTGGAAGATGTGACAAGGGCTGTTTGAGTAGTCCTTTTATGGCACTCTAGCATATAAATATGAACGACA TGATCAGATGTCTCTTTTATTATCTACTAAGAGGAATACACACTAAATGAGTATCTCTCTCCAGGTTTGGTACAATTTTC AATTTGGCACGACTTGTTGTGGATGATTTCAGAGGTGGATTTGAAAATGGGCCCTGGTGGCAACGTATTTTCAATGGATA CACTATCACTACCTGGTTGGTGGTATTAAATCTAGGGTCTACTGGTCTTTTGGTTTCATGGTTAATGAAATATGCTGATA ATATTGTCAAGGTATGTCCTTACACCAACTAGTAATTGTTTTGTGACACTAAAATGAGTAGTGAAGTATTGCACCTCAGC ATATGGTCTGTGTTTATTCATCGATCCCCTAACTATGAGTTTTGTCTGCTTTCTTTAGGTCTATTCCACTTCAATGGCTA TGCTGCTAACAATGGTACTATCAATATTTCTCTTTGACTTCAAACCTACATTGCAGGTAATTTTGTCTAAACAATTCCTA TATGTGTAGGTGACCATTTAGTGCTCTCCCATCATGGCCTAAGTTTTAGGCCAAGACTGATTTTATTTATTTATTTGCAC AGAATTTTAAATTTTAGATGTCACATAGAGATATGACTATATGATGATGTTTTACAGTATAAGCAAAGTTGCTTCAATTT AGAATCTATGTTCTTAAAGTTTGTACAATGCTTGTAATTAAAGTGCGCTATGCATTTTTTGAAAGGAGTGGCATGAATAG ATTTTCCCATTGTTCTCAGGCTATATAACTTACTGATTTTCTGTTCATTTCTCTTTGCAGCTTTTCTTGGGCATTGTTAT TTGTATGATGTCCCTACACATGTATTTTGCCCCATCAAAAATGCTCTTAGATATGCCATTAGCAGTTAAACCAGATGAAG AGAAGCTTATTGAAGATTCTGTCGATCGAAGAACACATTCATGA
CDS sequence (LotjaGi1g1v0789900.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGACAACGGACTGGAAAACGGTGGCTTTGTACCCCATTCCTTCTGTTATATACCTGATCCACAACAATGTTCAGTTTGC TACACTCATGTATGTGGACACTTCAACATATCAGATAATGGGGAACTTGAAGATTGTTACTACTGGAATACTATTCAGGC TGTTCTTGGGGAGGAGGCTTTCGAACTTGCAGTGGATGGCGGTTGGGCTGTTGGCTATTGGGACAACCACAAGTCAGGTT AGGGGCTGTGGAGTGGCTTCATGTGACTCCCTTTTCTCAGCACCAATTCAGGGTTACATGTTAGGAGTTCTATCTGCTTG TCTCTCAGCATTAGCTGGAATTTATACAGAGTTCTTAATGAAGAAAAACAGCGACACCTTGTACTGGCAGAATATACAGC TTTACACGTTTGGTACAATTTTCAATTTGGCACGACTTGTTGTGGATGATTTCAGAGGTGGATTTGAAAATGGGCCCTGG TGGCAACGTATTTTCAATGGATACACTATCACTACCTGGTTGGTGGTATTAAATCTAGGGTCTACTGGTCTTTTGGTTTC ATGGTTAATGAAATATGCTGATAATATTGTCAAGGTCTATTCCACTTCAATGGCTATGCTGCTAACAATGGTACTATCAA TATTTCTCTTTGACTTCAAACCTACATTGCAGCTTTTCTTGGGCATTGTTATTTGTATGATGTCCCTACACATGTATTTT GCCCCATCAAAAATGCTCTTAGATATGCCATTAGCAGTTAAACCAGATGAAGAGAAGCTTATTGAAGATTCTGTCGATCG AAGAACACATTCATGA
Protein sequence (LotjaGi1g1v0789900.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MTTDWKTVALYPIPSVIYLIHNNVQFATLMYVDTSTYQIMGNLKIVTTGILFRLFLGRRLSNLQWMAVGLLAIGTTTSQV RGCGVASCDSLFSAPIQGYMLGVLSACLSALAGIYTEFLMKKNSDTLYWQNIQLYTFGTIFNLARLVVDDFRGGFENGPW WQRIFNGYTITTWLVVLNLGSTGLLVSWLMKYADNIVKVYSTSMAMLLTMVLSIFLFDFKPTLQLFLGIVICMMSLHMYF APSKMLLDMPLAVKPDEEKLIEDSVDRRTHS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PIRSF | 1 | 271 | 271 | 2.3E-87 | ||
| Phobius | 1 | 38 | 38 | - | – | |
| PANTHER | 3 | 270 | 268 | 4.7E-125 | ||
| PANTHER | 3 | 270 | 268 | 4.7E-125 | – | |
| TMHMM | 7 | 29 | 23 | - | – | |
| SUPERFAMILY | 9 | 77 | 69 | 1.96E-5 | – | |
| Pfam | 12 | 239 | 228 | 2.7E-50 | ||
| TIGRFAM | 13 | 239 | 227 | 1.5E-31 | – | |
| TMHMM | 34 | 56 | 23 | - | – | |
| Phobius | 39 | 56 | 18 | - | – | |
| Phobius | 57 | 62 | 6 | - | – | |
| Phobius | 63 | 80 | 18 | - | – | |
| TMHMM | 63 | 82 | 20 | - | – | |
| Phobius | 81 | 99 | 19 | - | – | |
| TMHMM | 97 | 119 | 23 | - | – | |
| Phobius | 100 | 120 | 21 | - | – | |
| Phobius | 121 | 131 | 11 | - | – | |
| TMHMM | 126 | 148 | 23 | - | – | |
| Phobius | 132 | 148 | 17 | - | – | |
| Phobius | 149 | 167 | 19 | - | – | |
| TMHMM | 168 | 190 | 23 | - | – | |
| Phobius | 168 | 190 | 23 | - | – | |
| Phobius | 191 | 196 | 6 | - | – | |
| TMHMM | 195 | 217 | 23 | - | – | |
| Phobius | 197 | 217 | 21 | - | – | |
| Phobius | 218 | 222 | 5 | - | – | |
| TMHMM | 222 | 241 | 20 | - | – | |
| Phobius | 223 | 241 | 19 | - | – | |
| Phobius | 242 | 271 | 30 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Golgi membrane | The lipid bilayer surrounding any of the compartments of the Golgi apparatus. | ||
| Molecular function | Pyrimidine nucleotide-sugar transmembrane transporter activity | Enables the transfer of a pyrimidine nucleotide-sugar from one side of a membrane to the other. Pyrimidine nucleotide-sugars are pyrimidine nucleotides in glycosidic linkage with a monosaccharide or monosaccharide derivative. | ||
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
| Biological process | Pyrimidine nucleotide-sugar transmembrane transport | The process in which a pyrimidine nucleotide-sugar is transported across a membrane. Pyrimidine nucleotide-sugars are pyrimidine nucleotides in glycosidic linkage with a monosaccharide or monosaccharide derivative. |
Expression pattern of LotjaGi1g1v0789900.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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