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Field | Value |
---|---|
Gene ID | LotjaGi1g1v0790400 |
Transcript ID | LotjaGi1g1v0790400.3 |
Related isoforms 3 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Indole-3-acetic acid-amido synthetase GH3.3; TAIR: AT2G46370.1 Auxin-responsive GH3 family protein; Swiss-Prot: sp|Q6I581|GH35_ORYSJ Jasmonic acid-amido synthetase JAR1; TrEMBL-Plants: tr|A0A1J7IS32|A0A1J7IS32_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0790400 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:136219209..136219751) extracted from Lotus japonicus Gifu genome v1.2.
ATGTTGGAGAAAGTGGGAGAGTTTTATAACATGGACAAGGTTATAGAAGAATTTGAGTCACTCACAAAGGATGCAGGAAA GGTTCAGAGAGAAACTCTCAAGAGAATTTTGGAGGATAATGCATCAGCTGAGTATTTGCAGAATTTGGGCCTTAATGGGA GAACTGACCCTGATAGTTTCAAGGCCTGTGTTCCCATGGTTACACACAAAGATTTGGAACCTTATATCTACAAAATCATT GATGGCGAATCTTCTTCTATTCTCACTGGAAAACCCATCACAACTATGTCTTTAAGGTGTTGTTTTTCGCTTGTTTTTTT TATTCTTTTCTTCATCTTATAGCATGCTCAAAATCAATTCTGGTACTAAGTATTTTCAAAGTTTCTAAGTCTAAGAATGA TATTTCTTGCTGCAGCTCTGGCACTACTCAGGGGAAGCCAAAGTATCTCCCATGGAATGATGAGTTGTTTGAAACCACCA TGCAGATTTATAAGACCTCTTTTGCCTATAGGAACAGGTAATCCAGAATACTTCATTTCCTAA
CDS sequence (LotjaGi1g1v0790400.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTGGAGAAAGTGGGAGAGTTTTATAACATGGACAAGGTTATAGAAGAATTTGAGTCACTCACAAAGGATGCAGGAAA GGTTCAGAGAGAAACTCTCAAGAGAATTTTGGAGGATAATGCATCAGCTGAGTATTTGCAGAATTTGGGCCTTAATGGGA GAACTGACCCTGATAGTTTCAAGGCCTGTGTTCCCATGGTTACACACAAAGATTTGGAACCTTATATCTACAAAATCATT GATGGCGAATCTTCTTCTATTCTCACTGGAAAACCCATCACAACTATGTCTTTAAGCTCTGGCACTACTCAGGGGAAGCC AAAGTATCTCCCATGGAATGATGAGTTGTTTGAAACCACCATGCAGATTTATAAGACCTCTTTTGCCTATAGGAACAGGT AA
Protein sequence (LotjaGi1g1v0790400.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLEKVGEFYNMDKVIEEFESLTKDAGKVQRETLKRILEDNASAEYLQNLGLNGRTDPDSFKACVPMVTHKDLEPYIYKII DGESSSILTGKPITTMSLSSGTTQGKPKYLPWNDELFETTMQIYKTSFAYRNR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 7 | 133 | 127 | 2.6E-78 | – | |
PANTHER | 7 | 133 | 127 | 2.6E-78 | ||
Coils | 11 | 31 | 21 | - | – | |
Pfam | 17 | 132 | 116 | 5.1E-35 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0790400.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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