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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0792200 |
| Transcript ID | LotjaGi1g1v0792200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Ubiquitin family protein; TAIR: AT4G01000.1 Ubiquitin-like superfamily protein; Swiss-Prot: sp|Q07G43|SDE2_XENTR Protein SDE2 homolog; TrEMBL-Plants: tr|G7L437|G7L437_MEDTR Telomere stability/silencing protein; Found in the gene: LotjaGi1g1v0792200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:136401608..136407241) extracted from Lotus japonicus Gifu genome v1.2.
AGTGAACGTTGACCGAACAAAAAATCAAACACTCTTCTATCTGATTACTCTCTCTCTCTCTCCTCGATTTCTCTGAATCC CTAATTCCCCCAAATCCTCCACCATGGAATCCGACGATAGCAAGAAGATGTACAACCTGTTCGTGAAGCACTTGGATGGC AAAACCCTAACCCTATTATTCCCATCTCCGATCCTCTACGCCACTTCCATCAAGGATCGCCTCTTCCAACTCACCGGAAT TCCCTCCCAGCTCCAGCGTCTCGTCACCGGTTGCCGCCATCTAAACGACGAGAAATCGTTGCTATGTTGCTCGCCGGAAG AGGGGAACATGTTCCCGTCGGTGCGGCTGCTGCTGAGTCTGAAAGGCGGCAAGGGAGGGTTTGGCTCCCTTCTGCGTGGG GCGGCGACGAAGGCTGGGCAGAAGAAGACCAACAATTTCGACGCCTGCAGGGATATGAGTGGGAGAAGGCTGAGGCACGT GAACGCTGAGAAGAGGTTGGAGGATTGGAAGGCTGGGGAAGAGGAGAGGAAGCTGGAGAAGGTTGCTGAGGAGTTTCTGA AGAAGCAGATGAAGAATAAGGGGAAGAAGGGTGATGTCGATAGCGAGGCCCACAAGTATGTTGCTAAGTATAGGGAAGAG TCTGAACGCTGCACTGCAGAGGTTGCTTTGTCTGTTCAGGAAGCTTTGTCTTCTCTCAAGCGCAAGTCCTCACCATCCAA TGCTTCCCCTCCCCGTGATGGCAAGAAGTTGAAGATATGGTAAGTGGTCTAGTTTTCCTTTTTCATTTCTCTATTATTAG ATATACAATGTTTGCTTCAAAGGTTGCAACAGTATAGAACAGTACTAGGGCTACTTGTTGTTTACTTTAAGGTTACATAC ACATTTTAATAGCTCTTCAATTGATTGAGTAATTGGTGAAAATCGTGATACTGAAAATAGGAGTTAGATATATGATTATA GTAATTGGTTGAGTGATTCTGGAATAGTTATTAAATGCGGCAAAATGAGATAAAATGTCATGGATTTTTAAACAATAGAC ATGTTAGGAAAATGGGGAAAAGATATCTTTTATATGTAGTGTATGCATGTTAAATGTAGAACAAAACATGATACAGAATG AAGAAAAAGTTGGCACGTTTTTATTGAACTAGGTGCCGCCCTTACTGAGTGGGATAAGGCTTTTGTTGTTGTTGTTGTTG TTTATTTACCTAGGTGGGAATAAAGAAAGTTAGTGTGTGTGTCAATGGCTACTGTAGATAATATGATGAAACTTGATTTT TTATGGATTTGTGATATATTTTTATTGTTAGATTCTTGCGTATTCTATGGATTGTTATTGATCTTTGTGTTGGTGGATTT ACTAGGATGGGGAAGAGGAAAGTGAATGAAAGCGATAGTGATGATTCTGATGTGGAGGAGACTGAGAAATCTGTTTTGTT AAATAGCCAGAATGAGTTGGGCTCAAATGAGGCTGAAGATAGTCCAGGGTCTGTAACTGGTGGGAAGCAGGATGAAGACT CTTCTGGTGCCGGCTCATTTGAAATTGGATGTGAAGAAGAGAAGGAAACTGTTGTGGAAGAGGGCAAAGTGGAATCTGTT GGAACACAGAATGGTGGAACTATTCAGGCCGAGCTGAGTGTTGCTGCTGAACCTGTGGTGAATGAAGAGATGATAGAGGC TAATGCTATGCCCTGTCCAGAGTCAGTGCTGTCTGAAATCAATGCTGAAGATAATGGTTATCAGGATTGCAATGGATCTG TTGCTGACAAGTCTGGTGGCACAGCTATTCAAGCCTCTGAAACTGTGACTTGTGCAGGCAAATCTAATGATATGGAGATT GATGGATCTCTTGAGCATAAAGCAGCAGTCAATGAAGAAAGCTCACCAAGCACTAGTATTCCAGCTTTGGAGGAGCCTCT GAATTTTGATGTTTTTAATTCAGCTACTGAACTTGAGGTATATTTTCAGAACTTATCTTATGATTTCTGTTGTGTGCTGT TTCATATAGATCCTGAATTTTGATGTTTTTAACAGGTTCTTGGCTTGGAAAAGTTGAAGTCTGAACTACAGTCACGTGGG TTAAAATGTGGAGGTACTTTGCAGGAGCGCGCTGCCAGGCTTTTTCTTTTAAAATCAACTCCCCTAGACAAACTTCCAAA GAAGCTGCTCGCAAAGAAATGAAAAAAACAGACTCATCTATCATTTGCGAAGCAGTTCCTTCTCTGTACAGAGCATCTTA TAACTGTTCCTGCGTTTTTGTTTTGGCAGTCAATTGTATTTTGGCTTGGGGAACAGATAATGCCTAATGTGTGTTTTTTC TGTTCGTTTTATTGTTGTTTGTGGGCTGTATTTAATATAGCAATAACATTACCAGCAGCCAAAGGAAAGCTGAACAATGT ATAACCCAAGACTCGTGCATTATGAACAAGTTCAATTTTGCGTTTACATAATAAATAAATCACTATTACCAATGGCAGTT GTTAGTATTATTCAATCATTATATTACTAAGTTCCCAATCTTTTTACATGCAAATCACCCAAATCTGACATATCTTTAAC CTTTGCAAGTGTGACTAACGAACAATGAGAGCAGCTGGATTTTCTCCCCCAGATTTTGCATTGTGAGCACATAATGAGTG AGATTATGTTTGGATATCTGTTATTACTATAGTATACAAAGTTGTCAGCACGCATTTAAAGATAAATAACGTGACTAGAA CTTGCTTTTATAAGTAAGGATATATGTAAGTTCCATCACATTGCACTTAAATTGTGTGGACATATACACTAAATTCATAA TCAATCTAAGAGGTACTGGACACAACATGAACATGTGAAGGGGAGGGAGTGTTGCGGCATAGTGGGCATGTACCATTCAT GCGAAGCCATTCATCTATGCAGTGAGCATGGAAACAGTGCGTGCATTCAGGTATGCATCTAATGGTGTCTTTGCTTTTGT ACTCTGACAAGCATATAGAGCAACACAGGTCATTGAGTCCTGGTAATCTTCTGCTCTCACCTAATACAAGTTTCTGATAT GTCTCGATCGTAGACTCGTCCAAACCCATCCTAGTATTATCTTCTGTAGTTTGCAGTGATAGTGCAACAACAGTTCTGGA TGTAATAACTCTTCTATGTCCGTAGTACACAAAGCATGCCAACACAATGACACAAATCAGAGCTGGTCCAACAGCAGATA ATATACTGAGTTTATAAACTCGACCATGTCGTGATTCGCGACCTGAAAATATACGAGTTACTCAGTGATCAATGAATATG TTATACTTAGAGCTTATTTGGATGCGGACCAAAGAGCATTCATTGAAACTTATTCAATGTTTTTTTTAGCAAGTGACGTC AACATCGAAACTGGATCATAAATTCATAATCGCTGACTTTACGAGGTTTTCATTAATTTACAGCTAGTAATTTAGTACCA CAATGTAAATGAACTTTTAAGTCAAAAACAAACAAAGAAAAACAAATAGTATGACATCAAATCATTGACTTGATTTTTAT AGCTAGGTCAAATCTATGCGTTATGGCCCACCTGAGATTGGCAACTCCATTGGAAATATGAATTAGTCATAAATTTGTTT TTTTTAGTCCTTTAAAAAATTTGGATCATCAAGTTTCTGATTTTGCAAATGAGTTGACAAATGGGATAATTCAGATGGAA AATAAGACAACATAGTTACCCGGTTGTTGATCATAGAAACAAAGAACTTGATCACTGTGTCTGCTCTCAAACCTGCACAT GCCACCTTGTGATTCGCACTGTCTACAGTCAGGTGAATACCATGTCAACCAAAGATCTTCACTTAGGTGATCTCTGACAT TTGCAACTGGAACTGAGAGGTTTCTAATAACATTGCAGGACTCAGGCAATGGATTGGTCAAGTTCACTGAAAGAACAACT GATACAAAATGTGTCGAATTGCTAAGACACTCAACAGGAATGAATTGTGACCCCATGTTCTGAGTTGGGCAGCTTATGAA GGTGTAGCTACGGAGAAGAATGGCAGTGAAGGGAGAACCTGAAAGATTGAGGCTTTGAAGACGATTAGGAAGGCAATCAT CAGGGTCATAGACTTGTATCTGCTGTCTGAGATAGTTGATATTGCGGACATACAAGTTTCCGGTATGAGGGAGTATTAGA ACAATTCTGCTATCATCAGTACAAGTTAAATTGAAACCAGGATAGCCACAATGAGGCTGTTGCTGACCTTGAAATCGGAA GGGGAAACGAATAAGGATGTTATTATCTCCGCATGAAGAATATTGGCAATCACCTGAGGCAGATATGACAAGACAAAACA TGAACAAGTGAAAGAGGAACATCAACATGTCCATTGATTTTCAGATGAACAAATCTGTGGTGGGGAAGGGAACAGGGACC AGCTTGTGAAAATCATGAATCCGTATTTTGAAACCCATTCATCCAATTTAAGAAGCAAAACTGAAAGTCAAATGATATCA GGCTTTGAAGACGATTAGCAAAGCCTGAAATGCACATAATATGTCCGATGACCTAAATTGTTAGCCAAAGTCATAAAATT GAATATGCTGGAAGACTTGGCAAGTGAAAAACAAAAGCTTCCAGCTCATAGCTGGCAAATTTTCCTTTAATTGTATAATT AGTGTACACATCTACAAATTAATTTAACTACAATTTTTTCAAAAAAATACAAGCTCAATGGACATATATTTCCTGTAAGA TTTGGTTAGTGCAACTGTCCCAGGTGCAAAACAATGTCAAACCAACCTAGTTCATAAATTTCCTACAATCAGGGGCTTTG CAGTGGCAGGGAACCTTGCGTCCCTCCCGCTCATCCGGATCAAACAAGTAATCATACCTGTTAAAAAAGAGGGCAAAAAA TGGTTAGACTGATCAAAATCTTCATTATTAAACCGGAAAAAGAAAAGCCTTTCAAAATGCTGTCATATGACATCAATGTG CAAGATGGCTTATGTGAGGAGACATAAAAAATATACAACTTAACAAGCCATACATTAGTTCTTCACCAGCAGAAATATTG GTCTTGGCAATAAGAACAATCCGGTTCTCATGATCACCCAAACACATAATCCTTGCATAGCAGTTTGGCATGCACTGCAG CAGGTCACATTGTTGAATCATTATCTTTTTCAGAAACATACATTGTATATAATACAAAATTAACGTTTCACACTTTTTTT TGTAGATTTTTGGAGTAACGAGCAACTAAAGTACAAAGTAAGAAACTACTAGCACCACCAAAAAACCAAATATGAGATTA ATCAGAAATAACTTACAGAATGGTTTATTAAACGTGCAATATTGCCCTTATCTGTTGCATCAATTACCACTTCCTCGCTA ATCTTGAAGAGCTGCATAATTTATTTCACAGGATTGAGATCAGGCACAATGAATCCTAAAGTTAACAGTAAACATGAACA GTTCTAAACCATGCCTTAACATGTTTATAAGAGTGCAAATAAAGCATAATAGAACTCTACATGATTATAGAATAGGTTTC ACGGTTGTGTTTGGAATCATTAAAAGACAAATGATTTTATTTTTTAAATTCTATTAAATTTGGATTTGAAATGACATAGA TATCAATTCCCAGCCCAGCACCACAGAAATGGTC
CDS sequence (LotjaGi1g1v0792200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAATCCGACGATAGCAAGAAGATGTACAACCTGTTCGTGAAGCACTTGGATGGCAAAACCCTAACCCTATTATTCCC ATCTCCGATCCTCTACGCCACTTCCATCAAGGATCGCCTCTTCCAACTCACCGGAATTCCCTCCCAGCTCCAGCGTCTCG TCACCGGTTGCCGCCATCTAAACGACGAGAAATCGTTGCTATGTTGCTCGCCGGAAGAGGGGAACATGTTCCCGTCGGTG CGGCTGCTGCTGAGTCTGAAAGGCGGCAAGGGAGGGTTTGGCTCCCTTCTGCGTGGGGCGGCGACGAAGGCTGGGCAGAA GAAGACCAACAATTTCGACGCCTGCAGGGATATGAGTGGGAGAAGGCTGAGGCACGTGAACGCTGAGAAGAGGTTGGAGG ATTGGAAGGCTGGGGAAGAGGAGAGGAAGCTGGAGAAGGTTGCTGAGGAGTTTCTGAAGAAGCAGATGAAGAATAAGGGG AAGAAGGGTGATGTCGATAGCGAGGCCCACAAGTATGTTGCTAAGTATAGGGAAGAGTCTGAACGCTGCACTGCAGAGGT TGCTTTGTCTGTTCAGGAAGCTTTGTCTTCTCTCAAGCGCAAGTCCTCACCATCCAATGCTTCCCCTCCCCGTGATGGCA AGAAGTTGAAGATATGGATGGGGAAGAGGAAAGTGAATGAAAGCGATAGTGATGATTCTGATGTGGAGGAGACTGAGAAA TCTGTTTTGTTAAATAGCCAGAATGAGTTGGGCTCAAATGAGGCTGAAGATAGTCCAGGGTCTGTAACTGGTGGGAAGCA GGATGAAGACTCTTCTGGTGCCGGCTCATTTGAAATTGGATGTGAAGAAGAGAAGGAAACTGTTGTGGAAGAGGGCAAAG TGGAATCTGTTGGAACACAGAATGGTGGAACTATTCAGGCCGAGCTGAGTGTTGCTGCTGAACCTGTGGTGAATGAAGAG ATGATAGAGGCTAATGCTATGCCCTGTCCAGAGTCAGTGCTGTCTGAAATCAATGCTGAAGATAATGGTTATCAGGATTG CAATGGATCTGTTGCTGACAAGTCTGGTGGCACAGCTATTCAAGCCTCTGAAACTGTGACTTGTGCAGGCAAATCTAATG ATATGGAGATTGATGGATCTCTTGAGCATAAAGCAGCAGTCAATGAAGAAAGCTCACCAAGCACTAGTATTCCAGCTTTG GAGGAGCCTCTGAATTTTGATGTTTTTAATTCAGCTACTGAACTTGAGGTTCTTGGCTTGGAAAAGTTGAAGTCTGAACT ACAGTCACGTGGGTTAAAATGTGGAGGTACTTTGCAGGAGCGCGCTGCCAGGCTTTTTCTTTTAAAATCAACTCCCCTAG ACAAACTTCCAAAGAAGCTGCTCGCAAAGAAATGA
Protein sequence (LotjaGi1g1v0792200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MESDDSKKMYNLFVKHLDGKTLTLLFPSPILYATSIKDRLFQLTGIPSQLQRLVTGCRHLNDEKSLLCCSPEEGNMFPSV RLLLSLKGGKGGFGSLLRGAATKAGQKKTNNFDACRDMSGRRLRHVNAEKRLEDWKAGEEERKLEKVAEEFLKKQMKNKG KKGDVDSEAHKYVAKYREESERCTAEVALSVQEALSSLKRKSSPSNASPPRDGKKLKIWMGKRKVNESDSDDSDVEETEK SVLLNSQNELGSNEAEDSPGSVTGGKQDEDSSGAGSFEIGCEEEKETVVEEGKVESVGTQNGGTIQAELSVAAEPVVNEE MIEANAMPCPESVLSEINAEDNGYQDCNGSVADKSGGTAIQASETVTCAGKSNDMEIDGSLEHKAAVNEESSPSTSIPAL EEPLNFDVFNSATELEVLGLEKLKSELQSRGLKCGGTLQERAARLFLLKSTPLDKLPKKLLAKK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 2 | 109 | 108 | 3.4E-8 | – | |
| SUPERFAMILY | 6 | 75 | 70 | 2.53E-8 | ||
| PANTHER | 9 | 464 | 456 | 2.3E-103 | – | |
| PANTHER | 9 | 464 | 456 | 2.3E-103 | – | |
| Pfam | 10 | 159 | 150 | 3.5E-31 | ||
| CDD | 12 | 77 | 66 | 5.30714E-8 | – | |
| MobiDBLite | 196 | 301 | 106 | - | – | |
| MobiDBLite | 215 | 230 | 16 | - | – | |
| MobiDBLite | 240 | 270 | 31 | - | – | |
| Pfam | 404 | 463 | 60 | 9.4E-27 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0792200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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