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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0797400 |
| Transcript ID | LotjaGi1g1v0797400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Caffeic acid O-methyltransferase; TAIR: AT1G77520.1 O-methyltransferase family protein; Swiss-Prot: sp|Q43046|COMT1_POPKI Caffeic acid 3-O-methyltransferase 1; TrEMBL-Plants: tr|A0A072TEU0|A0A072TEU0_MEDTR Caffeic acid O-methyltransferase; Found in the gene: LotjaGi1g1v0797400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:136785072..136786046) extracted from Lotus japonicus Gifu genome v1.2.
GATCTTAGAGCCTCGAAGGATTAGTCGCATGGCTGTCGAATGTGGGGATACCTTGGGAAACCAAAAAAAAGAGAAGAAAC TTTCGAATAATGTTATGTTCACACCTCTAAAATGAGGTGGAGAGAGGTGAAGGAGGAGAGAGATAGAAAGAAAAGAAAAA GTAAGAGAGAGAAAATATGAGATGTGATAGATGATAAGAGGAGAGAGATATAAATAAAAATAGGTGAAAATGAAGTGTTT AAAACATAAGGTGTGTATGTATGATTGGAAACTTTCACTTTCGTCACATGGAAAATAAGTTGGACGAAAACATCAAAGAA GACGAATGTAGACTTCAAAAAACCAACTAAACTAGACAGGAGGTAGAAGATAAGGAAAGGAACCGTATATATCCTAAATA GTTGCAGAGAAGTATCAGTGTTTGATATAGTTTTCTAGTCGAGTACAAAATGGTTTAGGTAAGGAGACAAGAAAGGAGGC AAATGGAGACTTCAAAAATGGCCAACCTTGTTAATTCGCGTGAGGAAGACAAGAAAAAAGCAGAGGAGTTAGAAGATGAA GAAAGCTTCTCTTATGCTATACACCTTGCCAACTCTGTTGTGTTTCCCCTAACATTACAAACCGCAAATGAACTTGGAGT ATTTGATATCTTGCAAAAAGCAGGGCCAAATGCTAAGCTCTCTGCCAAACAGATAGCTTCCCAGCTTTCATGCACCAACC CAGAAGCGCCTTCAATGTTAGATCGCATCCTCTCCCTTCTTGCTTCTCACTCTGTCCTTAAATGCTCTGTTCTTCAAGAT GAACAACAAAAAAACCTTCACAAACTCTACAATTCTGATGGTGTTTCCTTAGGCCCCTTGATGGCCTTACTTCAAGATAA GATCTTCGTAGCTAGCTCGTATGTTATTCTCCTCTCTCTCACTCTTTAGATATACCACCACGGTTCCTATTGATTTAGAG CCGGGTAAAAGTAAG
CDS sequence (LotjaGi1g1v0797400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGACTTCAAAAATGGCCAACCTTGTTAATTCGCGTGAGGAAGACAAGAAAAAAGCAGAGGAGTTAGAAGATGAAGA AAGCTTCTCTTATGCTATACACCTTGCCAACTCTGTTGTGTTTCCCCTAACATTACAAACCGCAAATGAACTTGGAGTAT TTGATATCTTGCAAAAAGCAGGGCCAAATGCTAAGCTCTCTGCCAAACAGATAGCTTCCCAGCTTTCATGCACCAACCCA GAAGCGCCTTCAATGTTAGATCGCATCCTCTCCCTTCTTGCTTCTCACTCTGTCCTTAAATGCTCTGTTCTTCAAGATGA ACAACAAAAAAACCTTCACAAACTCTACAATTCTGATGGTGTTTCCTTAGGCCCCTTGATGGCCTTACTTCAAGATAAGA TCTTCGTAGCTAGCTCGTATGTTATTCTCCTCTCTCTCACTCTTTAG
Protein sequence (LotjaGi1g1v0797400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
METSKMANLVNSREEDKKKAEELEDEESFSYAIHLANSVVFPLTLQTANELGVFDILQKAGPNAKLSAKQIASQLSCTNP EAPSMLDRILSLLASHSVLKCSVLQDEQQKNLHKLYNSDGVSLGPLMALLQDKIFVASSYVILLSLTL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 21 | 21 | - | – | |
| Coils | 6 | 26 | 21 | - | – | |
| Gene3D | 10 | 123 | 114 | 2.0E-36 | ||
| PANTHER | 16 | 138 | 123 | 4.4E-36 | – | |
| PANTHER | 16 | 138 | 123 | 4.4E-36 | – | |
| SUPERFAMILY | 24 | 122 | 99 | 3.15E-24 | ||
| Pfam | 44 | 94 | 51 | 8.1E-18 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein dimerization activity | The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits. |
Expression pattern of LotjaGi1g1v0797400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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