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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0797800 |
| Transcript ID | LotjaGi1g1v0797800.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Serine/arginine repetitive matrix protein 2; TAIR: AT3G49601.1 pre-mRNA-splicing factor; Swiss-Prot: sp|Q7RYH7|CWC21_NEUCR Pre-mRNA-splicing factor cwc-21; TrEMBL-Plants: tr|K7M6I8|K7M6I8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0797800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:136804773..136808921) extracted from Lotus japonicus Gifu genome v1.2.
GTATCTTTTTAAAACCAAGAAGCTACAACCCTGTGCGAAACAATGTTATCATCATCGGTTCGGGTCCATACTGAAAGTTG TTGACAGAAACACCGATTAGGATAAATCCGAACCCTAACATAAACTTAGCTCCGTTCGCCGCCGTCGCACAGCACAATCG CGCTTGCGTTCGTTCGTTCTACGGTAACGTTGAGATCTGTAAATTGCCGTCGATATTAGGGTTTCTGATTCGTTGTTCTT ATTTCGTTTTTTGTTTTTCTGGATTTCTTTCGATTGCAGTGATCTAAATGTATAACGGAATAGGGTTACAGACCCCAAGA GGCTCGGGTACCAATGGTTACATTCAGAGCAACAAGTTCTTCGTGAGGCCCAAGACTACCAAGGTTTCTGACAACACCAA AGGATTTGAGGCAGATCAGGGAACTGCTGGTGTTACCAGGAAGCCCAACAAAGAGATCCTCGACCATGATCGCAAGCGTC AGATTCAACTCAAGCTCGTCATCCTCGAAGACAAGCTCACCGATCAGGGTTACACTGACTCTGAGATTGCCGAGAAACTT GAGGAGGCTCGGGCGAACCTGGAAGCCGCCGCTGCTGCTGAGGACGAAACTGATGGAGGATCCAATTCGGATAAAAAGTA ATTTGTTTTTAATTTTTTATGTTTATAATTAGGGTTGGGTTGTCAAGTAATTGGTGTCTGATTCAAATGATGTTTGTTTT GTTTCTTGAATTGCATCTGCTCTCTGCATCAAGTTGAAAGTGTTTATATTTTGGATGGTTTCTTAATGGTATGAAAGAAC TGCCTGGATGACACTGCCACTATTTTGATGAAATGAAGTTTATGTTTTGATTGGTAGAAAGGGGATAGAATGACGTTGAA TGGAATGAAATGCTACCCTGTTTTACTTCCCCTACCATAAAATAACCAAACGATGGGATGGTAATCGTTATTCTCTTTAA TTTGATCCCGACCCTATATTTCTTTTTATCCTATTCCATTTCATTCACTCACCATTAAGTATCCAAGCAAAGCCAATGTT CGCATGTTGAAAAATAAGTTTTAGTTTCAAAACTTTCAATTGTGGATGATTTTGAGTCACATGCATTCAGACACAGTTTC AGGATACTGTAAATTGCACTTCGGGTGTATATCAATGGTTATATTTACACATTTTCTAAAATGGTGACTGGGTATCACTA ACTTCTTTTGGGGATTTTCCAGGATTTCTGATACACAGACTCACCAAATTGCTGCTAGAAAGGAAAAGCAGATGGAGACA TTGAAAGCTGCTCTTGGCATAGTTTCAGCTGAAGTCCAGGAAGATGGGATTGATGATGGGCCAGGAAATGATGGAAAAGT TGGTGCTAATGCAGAGGGGAAACATAATTTGAAATCTGAACATTCCTTTTTGGATAGAGATTTCAGTTTGAAAAAACAAA TAGTTGAAGTTCAAAAAGATGAAAATGCTAAGAAGGGTCTTAAAGACTCAAGACACCACAAGAAGGGTGAAGCTCGCAAA AGAAAGTATGAGGATGATTCATCTGATTCAGACAGCAGTAGAGATAATGAGAAGGGACCTAGAAGGAAGCACGATAGGGA GAATACGGACAGCAGTGATGAATCAGATTCTGATAGTGATGCTAAGAGGAAGGTCAAGAAGGAAAAGAAGAGGAAGGCAC CAAAGCATCGCAAGAAAGGCAGGGTGGAGGACAGTGATGATACTGACTCTACTTCTGATTCTGATGACCGTAATGCTGCA AGGAGAACTAACAAAAAATCAGGAAAGAGGCATGTTTCTGATTATCATGAAGGCTCCCCCATGCATAGGCCTAAAGAAGG GAAGCAACACAAGCAGACGAGTAAACGTCGGGGTTCTGAAGAGGGGTCTGATGTTGACAGTGAGGAAAAAAAGAGTGGAA GACTTGAGAAGCAGAAGATGAAGGGGCGTGTTTCAAATGATGAGGACTCTGACAGAGATGGTGTTAGGCGTGTTTCAGGA CAAGATAGATATGTTCAAAAGGTGTCACGCTCTTCCTCTTATGAGAGTAGCAGTGACAATGATTCAGACAGCATTTCTAG TGACCACAGTTATGGAAGAGCTAGAAAAAGTGGGACTGTGGCAAAGAAAGGTGGACCTAGGGAGGAAGTAAAGGGCAGAG GTGATGTTGTGGAGAAAGGGAAAAGTCATGCTAAGGTTGATGGATTGGATTCTTTAAGAAAATCATATGGTAGAGAATTT ACGGATGGATCAAATACTAGAAGTCGAGCAATGGCACAGGCCAACAAGAAGATTAATGAAGATAGAGATACGGAGCCTGA CACATTTGCTAAGCAGGATGGGCATGATAGGAAGCTTGGAAAAACTGAGTCTGAATCAAAATCTAGAATGTATCAAAACA AAAGTCGAGAAAGGGATGGTTATTCTAAATCAGCTAAACTTGGAGGGTTTGATTATGAGTCTTCTGAGCAGAGAGGCAGA AATTATAACAGGGATGGTGAGGATCGGGAAGCAAGAAGGCATGGAAGAAATGATAATGATCTTAGAGAGCAGGAGCAGGA GCATAGAAAGGATAAGGATGACCATGGAGAAAGAAAGCGTGGAGGAAATGAAGATCATACAGGAAGGAAGCACTTGAGGG GAGAGATTGATCATGGAGAAAGAAAGCACTCAAGGGACGTGGATGATTCTAGAGAAGGAAAGCTCAAAAAGGAGGAAGAT GGCCTTGGGGAGAGAAAGCGTGGAAGAGATGAAGCTGATCCTAGAGAAGGAAAGCTAAAAAGGGATGAAGATGGCCTTGG GGAGAGAAAGCGTGGAAGAGATGAAGACGATCCTAGAGAAGGAAAACTAAAAAGAGATGAAGATGGCCATGGAGAGAGAA AGCATGGAAGAGATGAAGATGACCATGTAGGAAGAAAGCAATCAAGGTATGCAGATGATCCTAGAGAAGGAAAGCTCAGA AGGGATGAAGATGGCCATGGAGAGAGAAAGCATGGAAGAGATGAAGATGATCATGTAGGAAGAAAGCACTTTAGGGATGA GGATGATCATGGTGAAAGAAAGCATGAGAGGGATGAGGGTGATAATAGAGAAGTAAAATACAGAAGGTATGAGGATGGCC TTGGAGAAAGAAAGAACTCAAGGGATGAGGATGGCCATGGAGAGAGAAAGAAACTAAAGGATGGGGATGGTCATTGGGAA AGACAACGCAGAAGGGATGATGATTATCATGCAGAAAGAAAGCCTAGAAGGGATGGTGATTATCATGGACATGGAGAGAG AAAGCAGCACAGTAGGGATGATGATGGCCGTGGAGAAAGAAAGCACAAAAGCTAGTGCTGGAGGAAGAGCAGGGTAGCCA TGGTGATTACTCCAAAAGAGCCATGATTCACGTTTGAGAGCTATGAAAGTGACTCCTGAACTTGGACCAGGCATTTAGAA TGGTTATTTACTACTTTAATCTCTGAATACTTTTATAAAGCGTGTAATATGTTAATGTTTGCTTAGATTTGAAGTTGAGT TGTGACTGTAATTTTGCGTTTTTATAAGAAAAGTCTAGACGTATGTTTGCTAGACTGGAAACATTGGAGTTGCTATTTCC ATGAATGACAGAATCCTTTTCTTGTGCAGCATGGGTGTTTCCTTTAATTTTTTCCATAACCAGCAGTCTTGTTTTTCATG TTCCAAAACGCACATTCTTTGATTTGTTGACCCTCTATCACGTTGTCACTTGTCAGAATCTGCTCTTTCTTTGCTAATCA AAGCACTATCACAGTATCACCCCACTGCTAATCTGTGCAGTAGTATGTTTCTGTGTTAAGGTTAGGTTAAAATTTAAAAG ATTAGTAACCATGGTGCTTGAGTGGTGGCTCCTGCTAGCGCTTGAACATTGGATGGAGAATTCTCCTTTTGTATCTTCGC TTCCTAAGATTATATCTTGATCTTTCTGGCCTATGTATTTTATGAATTGTCTTGTTCCCATGCTGAAAGGCTTGTCAATT ATCTGATTATCATAGCTAGTCAGGTTCCTAATTTCAAGATTAGGAAGAATTGAGCTGGCAAAAGAAATGGAGGGAGAGAA TAAAGGAGGTACATTATTTTTGGTAGAGTAGTTTGATTAACTTAAATACCGGCACCTTTCTTTTTTCTT
CDS sequence (LotjaGi1g1v0797800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTATAACGGAATAGGGTTACAGACCCCAAGAGGCTCGGGTACCAATGGTTACATTCAGAGCAACAAGTTCTTCGTGAG GCCCAAGACTACCAAGGTTTCTGACAACACCAAAGGATTTGAGGCAGATCAGGGAACTGCTGGTGTTACCAGGAAGCCCA ACAAAGAGATCCTCGACCATGATCGCAAGCGTCAGATTCAACTCAAGCTCGTCATCCTCGAAGACAAGCTCACCGATCAG GGTTACACTGACTCTGAGATTGCCGAGAAACTTGAGGAGGCTCGGGCGAACCTGGAAGCCGCCGCTGCTGCTGAGGACGA AACTGATGGAGGATCCAATTCGGATAAAAAGATTTCTGATACACAGACTCACCAAATTGCTGCTAGAAAGGAAAAGCAGA TGGAGACATTGAAAGCTGCTCTTGGCATAGTTTCAGCTGAAGTCCAGGAAGATGGGATTGATGATGGGCCAGGAAATGAT GGAAAAGTTGGTGCTAATGCAGAGGGGAAACATAATTTGAAATCTGAACATTCCTTTTTGGATAGAGATTTCAGTTTGAA AAAACAAATAGTTGAAGTTCAAAAAGATGAAAATGCTAAGAAGGGTCTTAAAGACTCAAGACACCACAAGAAGGGTGAAG CTCGCAAAAGAAAGTATGAGGATGATTCATCTGATTCAGACAGCAGTAGAGATAATGAGAAGGGACCTAGAAGGAAGCAC GATAGGGAGAATACGGACAGCAGTGATGAATCAGATTCTGATAGTGATGCTAAGAGGAAGGTCAAGAAGGAAAAGAAGAG GAAGGCACCAAAGCATCGCAAGAAAGGCAGGGTGGAGGACAGTGATGATACTGACTCTACTTCTGATTCTGATGACCGTA ATGCTGCAAGGAGAACTAACAAAAAATCAGGAAAGAGGCATGTTTCTGATTATCATGAAGGCTCCCCCATGCATAGGCCT AAAGAAGGGAAGCAACACAAGCAGACGAGTAAACGTCGGGGTTCTGAAGAGGGGTCTGATGTTGACAGTGAGGAAAAAAA GAGTGGAAGACTTGAGAAGCAGAAGATGAAGGGGCGTGTTTCAAATGATGAGGACTCTGACAGAGATGGTGTTAGGCGTG TTTCAGGACAAGATAGATATGTTCAAAAGGTGTCACGCTCTTCCTCTTATGAGAGTAGCAGTGACAATGATTCAGACAGC ATTTCTAGTGACCACAGTTATGGAAGAGCTAGAAAAAGTGGGACTGTGGCAAAGAAAGGTGGACCTAGGGAGGAAGTAAA GGGCAGAGGTGATGTTGTGGAGAAAGGGAAAAGTCATGCTAAGGTTGATGGATTGGATTCTTTAAGAAAATCATATGGTA GAGAATTTACGGATGGATCAAATACTAGAAGTCGAGCAATGGCACAGGCCAACAAGAAGATTAATGAAGATAGAGATACG GAGCCTGACACATTTGCTAAGCAGGATGGGCATGATAGGAAGCTTGGAAAAACTGAGTCTGAATCAAAATCTAGAATGTA TCAAAACAAAAGTCGAGAAAGGGATGGTTATTCTAAATCAGCTAAACTTGGAGGGTTTGATTATGAGTCTTCTGAGCAGA GAGGCAGAAATTATAACAGGGATGGTGAGGATCGGGAAGCAAGAAGGCATGGAAGAAATGATAATGATCTTAGAGAGCAG GAGCAGGAGCATAGAAAGGATAAGGATGACCATGGAGAAAGAAAGCGTGGAGGAAATGAAGATCATACAGGAAGGAAGCA CTTGAGGGGAGAGATTGATCATGGAGAAAGAAAGCACTCAAGGGACGTGGATGATTCTAGAGAAGGAAAGCTCAAAAAGG AGGAAGATGGCCTTGGGGAGAGAAAGCGTGGAAGAGATGAAGCTGATCCTAGAGAAGGAAAGCTAAAAAGGGATGAAGAT GGCCTTGGGGAGAGAAAGCGTGGAAGAGATGAAGACGATCCTAGAGAAGGAAAACTAAAAAGAGATGAAGATGGCCATGG AGAGAGAAAGCATGGAAGAGATGAAGATGACCATGTAGGAAGAAAGCAATCAAGGTATGCAGATGATCCTAGAGAAGGAA AGCTCAGAAGGGATGAAGATGGCCATGGAGAGAGAAAGCATGGAAGAGATGAAGATGATCATGTAGGAAGAAAGCACTTT AGGGATGAGGATGATCATGGTGAAAGAAAGCATGAGAGGGATGAGGGTGATAATAGAGAAGTAAAATACAGAAGGTATGA GGATGGCCTTGGAGAAAGAAAGAACTCAAGGGATGAGGATGGCCATGGAGAGAGAAAGAAACTAAAGGATGGGGATGGTC ATTGGGAAAGACAACGCAGAAGGGATGATGATTATCATGCAGAAAGAAAGCCTAGAAGGGATGGTGATTATCATGGACAT GGAGAGAGAAAGCAGCACAGTAGGGATGATGATGGCCGTGGAGAAAGAAAGCACAAAAGCTAG
Protein sequence (LotjaGi1g1v0797800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MYNGIGLQTPRGSGTNGYIQSNKFFVRPKTTKVSDNTKGFEADQGTAGVTRKPNKEILDHDRKRQIQLKLVILEDKLTDQ GYTDSEIAEKLEEARANLEAAAAAEDETDGGSNSDKKISDTQTHQIAARKEKQMETLKAALGIVSAEVQEDGIDDGPGND GKVGANAEGKHNLKSEHSFLDRDFSLKKQIVEVQKDENAKKGLKDSRHHKKGEARKRKYEDDSSDSDSSRDNEKGPRRKH DRENTDSSDESDSDSDAKRKVKKEKKRKAPKHRKKGRVEDSDDTDSTSDSDDRNAARRTNKKSGKRHVSDYHEGSPMHRP KEGKQHKQTSKRRGSEEGSDVDSEEKKSGRLEKQKMKGRVSNDEDSDRDGVRRVSGQDRYVQKVSRSSSYESSSDNDSDS ISSDHSYGRARKSGTVAKKGGPREEVKGRGDVVEKGKSHAKVDGLDSLRKSYGREFTDGSNTRSRAMAQANKKINEDRDT EPDTFAKQDGHDRKLGKTESESKSRMYQNKSRERDGYSKSAKLGGFDYESSEQRGRNYNRDGEDREARRHGRNDNDLREQ EQEHRKDKDDHGERKRGGNEDHTGRKHLRGEIDHGERKHSRDVDDSREGKLKKEEDGLGERKRGRDEADPREGKLKRDED GLGERKRGRDEDDPREGKLKRDEDGHGERKHGRDEDDHVGRKQSRYADDPREGKLRRDEDGHGERKHGRDEDDHVGRKHF RDEDDHGERKHERDEGDNREVKYRRYEDGLGERKNSRDEDGHGERKKLKDGDGHWERQRRRDDDYHAERKPRRDGDYHGH GERKQHSRDDDGRGERKHKS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 811 | 811 | 9.3E-83 | – | |
| PANTHER | 1 | 811 | 811 | 9.3E-83 | – | |
| Pfam | 58 | 99 | 42 | 7.3E-11 | ||
| SMART | 58 | 103 | 46 | 5.6E-8 | ||
| Coils | 88 | 108 | 21 | - | – | |
| MobiDBLite | 98 | 132 | 35 | - | – | |
| MobiDBLite | 148 | 820 | 673 | - | – | |
| MobiDBLite | 167 | 203 | 37 | - | – | |
| MobiDBLite | 215 | 260 | 46 | - | – | |
| MobiDBLite | 275 | 298 | 24 | - | – | |
| MobiDBLite | 306 | 376 | 71 | - | – | |
| MobiDBLite | 380 | 409 | 30 | - | – | |
| MobiDBLite | 417 | 453 | 37 | - | – | |
| MobiDBLite | 454 | 469 | 16 | - | – | |
| MobiDBLite | 470 | 520 | 51 | - | – | |
| MobiDBLite | 533 | 820 | 288 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0797800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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